HEADER PLANT PROTEIN 13-SEP-17 6AZT TITLE ASPARAGINYL ENDOPEPTIDASE 1 BOUND TO AAN PEPTIDE, A TETRAHEDRAL TITLE 2 INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARAGINYL ENDOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-ALA-ASN TETRAHEDRAL INTERMEDIATE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIANTHUS ANNUUS; SOURCE 3 ORGANISM_COMMON: COMMON SUNFLOWER; SOURCE 4 ORGANISM_TAXID: 4232; SOURCE 5 GENE: AEP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.S.BOND REVDAT 4 15-NOV-23 6AZT 1 LINK ATOM REVDAT 3 01-JAN-20 6AZT 1 REMARK REVDAT 2 16-MAY-18 6AZT 1 COMPND SEQADV SEQRES HET REVDAT 2 2 1 HETNAM HETSYN FORMUL LINK REVDAT 2 3 1 ATOM REVDAT 1 07-FEB-18 6AZT 0 JRNL AUTH J.HAYWOOD,J.W.SCHMIDBERGER,A.M.JAMES,S.G.NONIS, JRNL AUTH 2 K.V.SUKHOVERKOV,M.ELIAS,C.S.BOND,J.S.MYLNE JRNL TITL STRUCTURAL BASIS OF RIBOSOMAL PEPTIDE MACROCYCLIZATION IN JRNL TITL 2 PLANTS. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29384475 JRNL DOI 10.7554/ELIFE.32955 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 31205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.58000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.101 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2235 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3022 ; 1.837 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;37.323 ;25.326 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;12.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1673 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 1.850 ; 2.034 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1390 ; 2.602 ; 3.028 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1124 ; 3.072 ; 2.351 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3584 ; 6.026 ;29.307 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6AZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 66.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 1.4 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.05700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.11400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.11400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.05700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 ILE A 5 REMARK 465 ILE A 6 REMARK 465 CYS A 7 REMARK 465 PHE A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 THR A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 TYR A 20 REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLN A 31 REMARK 465 LYS A 32 REMARK 465 TRP A 33 REMARK 465 ARG A 34 REMARK 465 TRP A 35 REMARK 465 GLY A 36 REMARK 465 TRP A 37 REMARK 465 ASP A 38 REMARK 465 PRO A 39 REMARK 465 LEU A 40 REMARK 465 ILE A 41 REMARK 465 ARG A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 VAL A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 47 REMARK 465 GLU A 48 REMARK 465 GLN A 49 REMARK 465 GLU A 50 REMARK 465 VAL A 51 REMARK 465 ASP A 52 REMARK 465 GLU A 53 REMARK 465 GLN A 54 REMARK 465 MET A 55 REMARK 465 THR A 56 REMARK 465 ASN A 57 REMARK 465 SER A 304 REMARK 465 ASN A 305 REMARK 465 THR A 306 REMARK 465 TYR A 307 REMARK 465 ASN A 308 REMARK 465 THR A 309 REMARK 465 ASN A 338 REMARK 465 LEU A 339 REMARK 465 PRO A 340 REMARK 465 ALA A 341 REMARK 465 ASN A 342 REMARK 465 GLN A 343 REMARK 465 ILE A 344 REMARK 465 HIS A 345 REMARK 465 PHE A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 LEU A 349 REMARK 465 ASP A 350 REMARK 465 GLY A 351 REMARK 465 VAL A 352 REMARK 465 ASN A 353 REMARK 465 GLN A 354 REMARK 465 ARG A 355 REMARK 465 ASP A 356 REMARK 465 ALA A 357 REMARK 465 ASP A 358 REMARK 465 LEU A 359 REMARK 465 ILE A 360 REMARK 465 PHE A 361 REMARK 465 LEU A 362 REMARK 465 TRP A 363 REMARK 465 GLN A 364 REMARK 465 ARG A 365 REMARK 465 TYR A 366 REMARK 465 LYS A 367 REMARK 465 LYS A 368 REMARK 465 SER A 369 REMARK 465 SER A 370 REMARK 465 GLU A 371 REMARK 465 SER A 372 REMARK 465 THR A 373 REMARK 465 ARG A 374 REMARK 465 PRO A 375 REMARK 465 GLU A 376 REMARK 465 ILE A 377 REMARK 465 LEU A 378 REMARK 465 ARG A 379 REMARK 465 GLU A 380 REMARK 465 ILE A 381 REMARK 465 THR A 382 REMARK 465 GLU A 383 REMARK 465 THR A 384 REMARK 465 LEU A 385 REMARK 465 THR A 386 REMARK 465 HIS A 387 REMARK 465 ARG A 388 REMARK 465 GLY A 389 REMARK 465 HIS A 390 REMARK 465 LEU A 391 REMARK 465 ASP A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 ILE A 395 REMARK 465 ASP A 396 REMARK 465 MET A 397 REMARK 465 ILE A 398 REMARK 465 GLY A 399 REMARK 465 VAL A 400 REMARK 465 LEU A 401 REMARK 465 LEU A 402 REMARK 465 PHE A 403 REMARK 465 GLY A 404 REMARK 465 PRO A 405 REMARK 465 GLN A 406 REMARK 465 ASN A 407 REMARK 465 GLY A 408 REMARK 465 ARG A 409 REMARK 465 SER A 410 REMARK 465 THR A 411 REMARK 465 LEU A 412 REMARK 465 HIS A 413 REMARK 465 SER A 414 REMARK 465 ALA A 415 REMARK 465 ARG A 416 REMARK 465 ALA A 417 REMARK 465 PRO A 418 REMARK 465 GLY A 419 REMARK 465 LEU A 420 REMARK 465 PRO A 421 REMARK 465 LEU A 422 REMARK 465 VAL A 423 REMARK 465 ASP A 424 REMARK 465 ASP A 425 REMARK 465 TRP A 426 REMARK 465 GLU A 427 REMARK 465 CYS A 428 REMARK 465 PHE A 429 REMARK 465 LYS A 430 REMARK 465 SER A 431 REMARK 465 THR A 432 REMARK 465 ALA A 433 REMARK 465 ARG A 434 REMARK 465 LEU A 435 REMARK 465 PHE A 436 REMARK 465 GLU A 437 REMARK 465 LYS A 438 REMARK 465 HIS A 439 REMARK 465 CYS A 440 REMARK 465 GLY A 441 REMARK 465 LEU A 442 REMARK 465 LEU A 443 REMARK 465 THR A 444 REMARK 465 GLN A 445 REMARK 465 TYR A 446 REMARK 465 GLY A 447 REMARK 465 MET A 448 REMARK 465 LYS A 449 REMARK 465 HIS A 450 REMARK 465 MET A 451 REMARK 465 ARG A 452 REMARK 465 ALA A 453 REMARK 465 PHE A 454 REMARK 465 ALA A 455 REMARK 465 ASN A 456 REMARK 465 ILE A 457 REMARK 465 CYS A 458 REMARK 465 ASN A 459 REMARK 465 SER A 460 REMARK 465 SER A 461 REMARK 465 VAL A 462 REMARK 465 GLU A 463 REMARK 465 LYS A 464 REMARK 465 SER A 465 REMARK 465 LYS A 466 REMARK 465 VAL A 467 REMARK 465 GLU A 468 REMARK 465 GLU A 469 REMARK 465 VAL A 470 REMARK 465 PHE A 471 REMARK 465 ILE A 472 REMARK 465 ALA A 473 REMARK 465 THR A 474 REMARK 465 CYS A 475 REMARK 465 GLY A 476 REMARK 465 GLY A 477 REMARK 465 LYS A 478 REMARK 465 ASN A 479 REMARK 465 ILE A 480 REMARK 465 GLY A 481 REMARK 465 PRO A 482 REMARK 465 TYR A 483 REMARK 465 GLY A 484 REMARK 465 THR A 485 REMARK 465 PHE A 486 REMARK 465 GLY A 487 REMARK 465 ALA A 488 REMARK 465 TYR A 489 REMARK 465 SER A 490 REMARK 465 VAL A 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 606 O HOH A 796 2.04 REMARK 500 O HOH A 790 O HOH A 791 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SNN A 177 C HIS A 178 N 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 34.95 79.98 REMARK 500 LYS A 132 75.01 -105.08 REMARK 500 SNN A 177 -143.00 177.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 DBREF1 6AZT A 1 491 UNP A0A0G2RI59_HELAN DBREF2 6AZT A A0A0G2RI59 1 491 DBREF 6AZT B 1 3 PDB 6AZT 6AZT 1 3 SEQADV 6AZT SNN A 177 UNP A0A0G2RI5 ASP 177 CONFLICT SEQRES 1 A 491 MET VAL SER ARG ILE ILE CYS PHE THR LEU VAL LEU VAL SEQRES 2 A 491 THR VAL VAL ALA LEU SER TYR GLY ALA ALA GLY ARG GLU SEQRES 3 A 491 SER SER GLY GLY GLN LYS TRP ARG TRP GLY TRP ASP PRO SEQRES 4 A 491 LEU ILE ARG SER PRO VAL ASP ALA GLU GLN GLU VAL ASP SEQRES 5 A 491 GLU GLN MET THR ASN GLY THR LYS TRP ALA VAL LEU VAL SEQRES 6 A 491 ALA GLY SER LYS GLY TYR GLY ASN TYR ARG HIS GLN ALA SEQRES 7 A 491 ASP VAL CYS HIS ALA TYR GLN VAL LEU LYS LYS GLY GLY SEQRES 8 A 491 LEU LYS ASP GLU ASN ILE VAL VAL PHE MET TYR ASP ASP SEQRES 9 A 491 ILE ALA LYS SER GLU MET ASN PRO ARG PRO GLY ILE ILE SEQRES 10 A 491 ILE ASN SER PRO LYS GLY GLU ASP VAL TYR ALA GLY VAL SEQRES 11 A 491 PRO LYS ASP TYR THR GLY LYS ASN VAL THR VAL ASP ASN SEQRES 12 A 491 LEU SER ALA VAL LEU LEU GLY ASP ARG SER ALA VAL LYS SEQRES 13 A 491 GLY GLY SER GLY LYS VAL VAL ASP SER LYS PRO GLU ASP SEQRES 14 A 491 ARG ILE PHE LEU PHE TYR SER SNN HIS GLY GLY PRO GLY SEQRES 15 A 491 VAL LEU GLY MET PRO ASN GLU PRO HIS LEU VAL ALA LYS SEQRES 16 A 491 ASP LEU VAL ASP VAL LEU LYS LYS LYS HIS ALA MET GLY SEQRES 17 A 491 THR TYR LYS GLU MET VAL ILE TYR LEU GLU ALA CYS GLU SEQRES 18 A 491 SER GLY SER ILE PHE GLU GLY ILE LEU PRO GLU ASP LEU SEQRES 19 A 491 ASN ILE TYR ALA THR THR ALA SER GLY ALA GLN GLU ASN SEQRES 20 A 491 SER TYR GLY THR TYR CYS PRO GLY THR GLU PRO SER PRO SEQRES 21 A 491 PRO PRO GLU TYR ILE THR CYS LEU GLY ASP LEU TYR SER SEQRES 22 A 491 VAL ALA TRP MET GLU ASP SER GLU THR HIS ASN LEU LYS SEQRES 23 A 491 LYS GLU SER LEU GLU GLN GLN PHE ASN LYS VAL LYS LYS SEQRES 24 A 491 ARG THR SER ASN SER ASN THR TYR ASN THR GLY SER HIS SEQRES 25 A 491 VAL MET GLU TYR GLY SER LYS ASP ILE LYS PRO GLU LYS SEQRES 26 A 491 VAL TYR LEU TYR LEU GLY PHE ASP PRO ALA THR VAL ASN SEQRES 27 A 491 LEU PRO ALA ASN GLN ILE HIS PHE ASP LYS LEU ASP GLY SEQRES 28 A 491 VAL ASN GLN ARG ASP ALA ASP LEU ILE PHE LEU TRP GLN SEQRES 29 A 491 ARG TYR LYS LYS SER SER GLU SER THR ARG PRO GLU ILE SEQRES 30 A 491 LEU ARG GLU ILE THR GLU THR LEU THR HIS ARG GLY HIS SEQRES 31 A 491 LEU ASP SER SER ILE ASP MET ILE GLY VAL LEU LEU PHE SEQRES 32 A 491 GLY PRO GLN ASN GLY ARG SER THR LEU HIS SER ALA ARG SEQRES 33 A 491 ALA PRO GLY LEU PRO LEU VAL ASP ASP TRP GLU CYS PHE SEQRES 34 A 491 LYS SER THR ALA ARG LEU PHE GLU LYS HIS CYS GLY LEU SEQRES 35 A 491 LEU THR GLN TYR GLY MET LYS HIS MET ARG ALA PHE ALA SEQRES 36 A 491 ASN ILE CYS ASN SER SER VAL GLU LYS SER LYS VAL GLU SEQRES 37 A 491 GLU VAL PHE ILE ALA THR CYS GLY GLY LYS ASN ILE GLY SEQRES 38 A 491 PRO TYR GLY THR PHE GLY ALA TYR SER VAL SEQRES 1 B 3 ALA ALA CE7 MODRES 6AZT SNN A 177 ASP MODIFIED RESIDUE HET SNN A 177 7 HET CE7 B 3 9 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HETNAM SNN L-3-AMINOSUCCINIMIDE HETNAM CE7 (3S)-3-AMINO-4,4,4-TRIHYDROXYBUTANAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SNN C4 H6 N2 O2 FORMUL 2 CE7 C4 H10 N2 O4 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *230(H2 O) HELIX 1 AA1 GLY A 70 GLY A 72 5 3 HELIX 2 AA2 ASN A 73 GLY A 90 1 18 HELIX 3 AA3 LYS A 93 GLU A 95 5 3 HELIX 4 AA4 THR A 135 VAL A 139 5 5 HELIX 5 AA5 THR A 140 GLY A 150 1 11 HELIX 6 AA6 ASP A 151 VAL A 155 5 5 HELIX 7 AA7 ALA A 194 GLY A 208 1 15 HELIX 8 AA8 GLU A 221 PHE A 226 5 6 HELIX 9 AA9 LEU A 271 GLU A 281 1 11 HELIX 10 AB1 SER A 289 ASN A 303 1 15 HELIX 11 AB2 LYS A 319 LYS A 322 5 4 HELIX 12 AB3 VAL A 326 GLY A 331 1 6 HELIX 13 AB4 ASP A 333 VAL A 337 5 5 SHEET 1 AA1 6 ILE A 97 PHE A 100 0 SHEET 2 AA1 6 LYS A 60 ALA A 66 1 N LEU A 64 O PHE A 100 SHEET 3 AA1 6 ARG A 170 SER A 176 1 O PHE A 174 N VAL A 65 SHEET 4 AA1 6 GLU A 212 GLU A 218 1 O TYR A 216 N LEU A 173 SHEET 5 AA1 6 ILE A 236 THR A 240 1 O THR A 239 N ILE A 215 SHEET 6 AA1 6 MET A 314 GLY A 317 -1 O TYR A 316 N ALA A 238 SHEET 1 AA2 3 GLY A 179 GLY A 180 0 SHEET 2 AA2 3 VAL A 183 LEU A 184 -1 O VAL A 183 N GLY A 180 SHEET 3 AA2 3 LEU A 192 VAL A 193 -1 O LEU A 192 N LEU A 184 SHEET 1 AA3 2 GLY A 250 THR A 251 0 SHEET 2 AA3 2 GLY A 269 ASP A 270 -1 O GLY A 269 N THR A 251 SSBOND 1 CYS A 253 CYS A 267 1555 1555 2.19 LINK C SER A 176 N SNN A 177 1555 1555 1.47 LINK C SNN A 177 N HIS A 178 1555 1555 1.53 LINK C5 SNN A 177 N HIS A 178 1555 1555 1.58 LINK SG ACYS A 220 C ACE7 B 3 1555 1555 1.89 LINK C AALA B 2 N ACE7 B 3 1555 1555 1.33 CISPEP 1 GLU A 189 PRO A 190 0 -0.24 CISPEP 2 GLU A 257 PRO A 258 0 -5.14 SITE 1 AC1 8 HIS A 82 GLY A 123 GLU A 124 VAL A 126 SITE 2 AC1 8 GLU A 281 HOH A 609 HOH A 667 HOH A 737 SITE 1 AC2 10 LYS A 69 TYR A 102 HIS A 205 GLY A 208 SITE 2 AC2 10 TYR A 210 LYS A 211 ASN A 235 HOH A 621 SITE 3 AC2 10 HOH A 642 HOH A 721 SITE 1 AC3 5 HIS A 178 GLY A 179 GLY A 180 HIS A 191 SITE 2 AC3 5 HOH A 778 CRYST1 77.030 77.030 108.171 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012982 0.007495 0.000000 0.00000 SCALE2 0.000000 0.014990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009245 0.00000