HEADER HYDROLASE 13-SEP-17 6B03 TITLE THE CRYSTAL STRUCTURE OF THE FERREDOXIN PROTEASE FUSC IN COMPLEX WITH TITLE 2 ITS SUBSTRATE PLANT FERREDOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZINC PROTEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FERREDOXIN-2, CHLOROPLASTIC; COMPND 7 CHAIN: F, C; COMPND 8 FRAGMENT: UNP RESIDUES 53-145; COMPND 9 SYNONYM: ATFD2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM ATROSEPTICUM SCRI1043; SOURCE 3 ORGANISM_TAXID: 218491; SOURCE 4 STRAIN: SCRI 1043 / ATCC BAA-672; SOURCE 5 GENE: ECA0879; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 12 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 13 ORGANISM_TAXID: 3702; SOURCE 14 GENE: FD2, PETF, PETF1, AT1G60950, T7P1.9; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS M16 PROTEASE, FERREDOXIN CLEAVAGE, IRON ACQUISITION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.GRINTER REVDAT 3 13-MAR-24 6B03 1 REMARK REVDAT 2 15-AUG-18 6B03 1 SOURCE JRNL REVDAT 1 20-JUN-18 6B03 0 JRNL AUTH R.GRINTER,I.D.HAY,J.SONG,J.WANG,D.TENG,V.DHANESAKARAN, JRNL AUTH 2 J.J.WILKSCH,M.R.DAVIES,D.LITTLER,S.A.BECKHAM,I.R.HENDERSON, JRNL AUTH 3 R.A.STRUGNELL,G.DOUGAN,T.LITHGOW JRNL TITL FUSC, A MEMBER OF THE M16 PROTEASE FAMILY ACQUIRED BY JRNL TITL 2 BACTERIA FOR IRON PIRACY AGAINST PLANTS. JRNL REF PLOS BIOL. V. 16 06026 2018 JRNL REFN ESSN 1545-7885 JRNL PMID 30071011 JRNL DOI 10.1371/JOURNAL.PBIO.2006026 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2938 - 6.4997 1.00 2828 163 0.1753 0.1866 REMARK 3 2 6.4997 - 5.1622 1.00 2721 142 0.1854 0.2433 REMARK 3 3 5.1622 - 4.5106 1.00 2685 156 0.1545 0.1982 REMARK 3 4 4.5106 - 4.0986 1.00 2655 144 0.1545 0.2130 REMARK 3 5 4.0986 - 3.8050 1.00 2663 150 0.1697 0.2129 REMARK 3 6 3.8050 - 3.5808 1.00 2648 143 0.1834 0.2408 REMARK 3 7 3.5808 - 3.4016 1.00 2639 139 0.2014 0.2670 REMARK 3 8 3.4016 - 3.2536 1.00 2643 131 0.2411 0.3348 REMARK 3 9 3.2536 - 3.1283 1.00 2641 145 0.2538 0.3270 REMARK 3 10 3.1283 - 3.0204 1.00 2581 161 0.2576 0.3175 REMARK 3 11 3.0204 - 2.9260 1.00 2654 145 0.2563 0.3380 REMARK 3 12 2.9260 - 2.8424 1.00 2600 132 0.2859 0.3258 REMARK 3 13 2.8424 - 2.7676 1.00 2643 137 0.2886 0.3392 REMARK 3 14 2.7676 - 2.7001 1.00 2643 113 0.3400 0.4241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7739 REMARK 3 ANGLE : 1.120 10515 REMARK 3 CHIRALITY : 0.060 1168 REMARK 3 PLANARITY : 0.007 1381 REMARK 3 DIHEDRAL : 6.972 6510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 10.4002 163.3148 17.5020 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.3234 REMARK 3 T33: 0.3486 T12: -0.0051 REMARK 3 T13: 0.0205 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.1800 L22: 0.1087 REMARK 3 L33: 0.0988 L12: -0.3125 REMARK 3 L13: 0.1571 L23: -0.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.0114 S13: -0.0771 REMARK 3 S21: 0.0239 S22: -0.0477 S23: 0.0714 REMARK 3 S31: 0.0454 S32: 0.0277 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.36300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: SPARE PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M NAKPO4, 0.1 M REMARK 280 BISTRISPROPANE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.60250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.60250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1039 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 TRP A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 TRP A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 VAL A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 922 REMARK 465 LYS A 923 REMARK 465 GLU A 924 REMARK 465 TYR F 38 REMARK 465 SER F 39 REMARK 465 CYS F 40 REMARK 465 ARG F 41 REMARK 465 ALA F 42 REMARK 465 GLY F 43 REMARK 465 SER F 44 REMARK 465 CYS F 45 REMARK 465 SER F 46 REMARK 465 SER F 47 REMARK 465 CYS F 48 REMARK 465 ALA F 49 REMARK 465 GLY F 50 REMARK 465 LYS F 51 REMARK 465 VAL F 52 REMARK 465 VAL F 53 REMARK 465 SER F 54 REMARK 465 GLY F 55 REMARK 465 SER F 56 REMARK 465 VAL F 57 REMARK 465 ASP F 58 REMARK 465 GLN F 59 REMARK 465 SER F 60 REMARK 465 ASP F 61 REMARK 465 GLN F 62 REMARK 465 SER F 63 REMARK 465 PHE F 64 REMARK 465 LEU F 65 REMARK 465 ASP F 66 REMARK 465 ASP F 67 REMARK 465 GLU F 68 REMARK 465 GLN F 69 REMARK 465 ILE F 70 REMARK 465 GLY F 71 REMARK 465 GLU F 72 REMARK 465 GLY F 73 REMARK 465 PHE F 74 REMARK 465 VAL F 75 REMARK 465 LEU F 76 REMARK 465 THR F 77 REMARK 465 CYS F 78 REMARK 465 ALA F 79 REMARK 465 ALA F 80 REMARK 465 TYR F 81 REMARK 465 PRO F 82 REMARK 465 THR F 83 REMARK 465 SER F 84 REMARK 465 ASP F 85 REMARK 465 HIS F 91 REMARK 465 LYS F 92 REMARK 465 GLU F 93 REMARK 465 GLU F 94 REMARK 465 ALA F 95 REMARK 465 ILE F 96 REMARK 465 MET F 97 REMARK 465 LEU F 98 REMARK 465 GLU F 99 REMARK 465 HIS F 100 REMARK 465 HIS F 101 REMARK 465 HIS F 102 REMARK 465 HIS F 103 REMARK 465 HIS F 104 REMARK 465 HIS F 105 REMARK 465 ALA C 51 REMARK 465 THR C 52 REMARK 465 TYR C 53 REMARK 465 LYS C 54 REMARK 465 VAL C 55 REMARK 465 LYS C 56 REMARK 465 PHE C 57 REMARK 465 ILE C 58 REMARK 465 THR C 59 REMARK 465 PRO C 60 REMARK 465 GLU C 61 REMARK 465 GLY C 62 REMARK 465 GLU C 63 REMARK 465 LEU C 64 REMARK 465 GLU C 65 REMARK 465 VAL C 66 REMARK 465 GLU C 67 REMARK 465 CYS C 68 REMARK 465 ASP C 69 REMARK 465 ASP C 70 REMARK 465 ASP C 71 REMARK 465 VAL C 72 REMARK 465 TYR C 73 REMARK 465 VAL C 74 REMARK 465 LEU C 75 REMARK 465 ASP C 76 REMARK 465 ALA C 77 REMARK 465 ALA C 78 REMARK 465 GLU C 79 REMARK 465 GLU C 80 REMARK 465 ALA C 81 REMARK 465 GLY C 82 REMARK 465 ILE C 83 REMARK 465 ASP C 84 REMARK 465 LEU C 85 REMARK 465 PRO C 86 REMARK 465 TYR C 87 REMARK 465 SER C 88 REMARK 465 CYS C 89 REMARK 465 ARG C 90 REMARK 465 ALA C 91 REMARK 465 GLY C 92 REMARK 465 SER C 93 REMARK 465 CYS C 94 REMARK 465 SER C 95 REMARK 465 SER C 96 REMARK 465 CYS C 97 REMARK 465 ALA C 98 REMARK 465 GLY C 99 REMARK 465 LYS C 100 REMARK 465 VAL C 101 REMARK 465 VAL C 102 REMARK 465 SER C 103 REMARK 465 GLY C 104 REMARK 465 SER C 105 REMARK 465 VAL C 106 REMARK 465 ASP C 107 REMARK 465 GLN C 108 REMARK 465 SER C 109 REMARK 465 ASP C 110 REMARK 465 GLN C 111 REMARK 465 SER C 112 REMARK 465 PHE C 113 REMARK 465 LEU C 114 REMARK 465 ASP C 115 REMARK 465 ASP C 116 REMARK 465 GLU C 117 REMARK 465 GLN C 118 REMARK 465 ILE C 119 REMARK 465 GLY C 120 REMARK 465 GLU C 121 REMARK 465 GLY C 122 REMARK 465 PHE C 123 REMARK 465 VAL C 124 REMARK 465 LEU C 125 REMARK 465 THR C 126 REMARK 465 CYS C 127 REMARK 465 ALA C 128 REMARK 465 ALA C 129 REMARK 465 TYR C 130 REMARK 465 PRO C 131 REMARK 465 THR C 132 REMARK 465 SER C 133 REMARK 465 LYS C 141 REMARK 465 GLU C 142 REMARK 465 GLU C 143 REMARK 465 ALA C 144 REMARK 465 ILE C 145 REMARK 465 MET C 146 REMARK 465 LEU C 147 REMARK 465 GLU C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 HIS C 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 832 O HOH A 1001 2.01 REMARK 500 O GLY A 461 O HOH A 1002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU F 15 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 CYS F 19 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -37.36 77.14 REMARK 500 ASN A 74 22.34 -77.10 REMARK 500 ARG A 88 -145.23 -91.34 REMARK 500 ASN A 117 -160.94 -118.82 REMARK 500 HIS A 147 20.87 -141.19 REMARK 500 LYS A 169 49.26 -107.02 REMARK 500 ASP A 256 57.29 -145.62 REMARK 500 THR A 434 31.98 -96.56 REMARK 500 GLN A 504 120.64 -19.82 REMARK 500 GLN A 549 38.50 -84.49 REMARK 500 ALA A 550 54.97 -111.55 REMARK 500 TRP A 577 -154.55 -94.58 REMARK 500 GLN A 612 26.20 -76.33 REMARK 500 LEU A 783 -8.93 -58.67 REMARK 500 ALA A 791 -15.59 -47.51 REMARK 500 PRO A 881 34.45 -96.34 REMARK 500 PRO F 11 30.67 -68.43 REMARK 500 GLU F 12 -30.83 -144.41 REMARK 500 LEU F 36 -74.81 -129.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 503 GLN A 504 148.54 REMARK 500 ARG A 822 ALA A 823 -145.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 299 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BO5 RELATED DB: PDB DBREF 6B03 A 1 924 UNP Q6D8U3 Q6D8U3_PECAS 1 924 DBREF 6B03 F 2 94 UNP P16972 FER2_ARATH 53 145 DBREF 6B03 C 51 143 UNP P16972 FER2_ARATH 53 145 SEQADV 6B03 ALA F 95 UNP P16972 EXPRESSION TAG SEQADV 6B03 ILE F 96 UNP P16972 EXPRESSION TAG SEQADV 6B03 MET F 97 UNP P16972 EXPRESSION TAG SEQADV 6B03 LEU F 98 UNP P16972 EXPRESSION TAG SEQADV 6B03 GLU F 99 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS F 100 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS F 101 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS F 102 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS F 103 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS F 104 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS F 105 UNP P16972 EXPRESSION TAG SEQADV 6B03 ALA C 144 UNP P16972 EXPRESSION TAG SEQADV 6B03 ILE C 145 UNP P16972 EXPRESSION TAG SEQADV 6B03 MET C 146 UNP P16972 EXPRESSION TAG SEQADV 6B03 LEU C 147 UNP P16972 EXPRESSION TAG SEQADV 6B03 GLU C 148 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS C 149 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS C 150 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS C 151 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS C 152 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS C 153 UNP P16972 EXPRESSION TAG SEQADV 6B03 HIS C 154 UNP P16972 EXPRESSION TAG SEQRES 1 A 924 MET ASN TRP LYS LYS CYS CYS TRP LEU SER LEU THR ALA SEQRES 2 A 924 VAL GLY LEU LEU ALA GLY SER VAL VAL SER GLN ALA GLU SEQRES 3 A 924 GLU ILE LYS SER PRO LEU PRO VAL PHE LYS GLU GLY THR SEQRES 4 A 924 LEU ALA ASN GLY PHE ARG TYR THR LEU VAL GLN LEU GLU SEQRES 5 A 924 GLY PRO LYS THR ARG VAL ASP ILE ARG LEU ILE VAL ASP SEQRES 6 A 924 VAL GLY SER ILE ASP GLU LYS ASP ASN GLU SER GLY VAL SEQRES 7 A 924 ALA HIS MET VAL GLU HIS MET VAL PHE ARG ALA SER ASP SEQRES 8 A 924 ALA PHE PRO GLN GLY VAL SER THR GLU LEU HIS LYS GLN SEQRES 9 A 924 GLY TRP GLY ARG GLY GLN SER TYR ASN ALA VAL THR ASN SEQRES 10 A 924 TYR GLU ARG THR MET TYR MET MET SER PRO PRO LYS GLY SEQRES 11 A 924 ASN LEU ASP LEU GLY ALA THR LEU GLN ALA LEU SER GLN SEQRES 12 A 924 MET THR GLY HIS ALA LYS LEU LEU GLN SER ASP LEU ASP SEQRES 13 A 924 ASP GLU ARG LYS ILE ILE LEU GLU GLU TRP ARG GLY LYS SEQRES 14 A 924 LEU GLY VAL ALA GLU ARG MET ASN GLN GLN ARG VAL GLN SEQRES 15 A 924 ALA ILE ARG HIS ASP SER ARG TYR PRO SER ARG PRO VAL SEQRES 16 A 924 ILE GLY THR GLU GLU SER ILE ASN ASP THR PRO ALA SER SEQRES 17 A 924 VAL LEU GLN ASP PHE TYR GLN ARG TRP TYR HIS PRO SER SEQRES 18 A 924 ASN MET ARG LEU MET ILE ILE GLY ASP ILE THR PRO ALA SEQRES 19 A 924 ASP ALA GLU ARG GLU ILE GLN ARG TYR PHE ALA ALA LEU SEQRES 20 A 924 PRO ASN VAL ALA VAL PRO THR ARG ASP TYR TYR GLU PRO SEQRES 21 A 924 LEU LEU LYS PRO GLN LEU LYS VAL ALA ARG LEU GLN ASP SEQRES 22 A 924 SER GLN SER GLY SER SER GLN VAL SER PHE VAL TYR ARG SEQRES 23 A 924 PHE ASN ASP LYS ASP ALA PHE GLY GLN SER GLU TYR ARG SEQRES 24 A 924 HIS ARG LEU LEU THR GLN ILE THR MET SER ALA VAL THR SEQRES 25 A 924 ARG GLN VAL ARG ARG GLN LYS ALA GLU LEU PRO GLN ASP SEQRES 26 A 924 ALA SER SER LEU VAL VAL ARG LYS SER ASP ILE GLY LYS SEQRES 27 A 924 THR THR ALA ALA LEU GLY PHE PHE ALA ASN VAL MET PRO SEQRES 28 A 924 GLY GLY HIS ASP ALA ALA ILE SER ALA VAL LEU LYS GLU SEQRES 29 A 924 ILE GLU ARG PHE LYS ARG TYR PRO LEU ASN GLU GLN ASP SEQRES 30 A 924 ILE THR GLU ILE THR SER ASP ILE ARG GLU VAL ALA GLN SEQRES 31 A 924 ARG MET SER VAL THR PRO GLU THR ARG GLU PHE ALA ASP SEQRES 32 A 924 TRP VAL GLN GLN LEU THR ILE VAL TRP GLN GLN ASP ARG SEQRES 33 A 924 PRO TYR VAL GLY SER GLN GLN ARG GLY LYS ASP ALA LEU SEQRES 34 A 924 GLU ALA LEU ASP THR ILE LYS GLY GLU ASP VAL ASN ARG SEQRES 35 A 924 HIS TRP GLN ARG TRP LEU ALA SER PRO ASP THR LEU ALA SEQRES 36 A 924 GLN PHE SER VAL PRO GLY ALA THR PRO PHE THR LEU PRO SEQRES 37 A 924 LYS PRO ASP ALA ILE SER LYS LEU GLN LYS GLN TRP ALA SEQRES 38 A 924 LEU ALA THR LEU ALA PRO LEU ARG LEU GLU GLU LYS LYS SEQRES 39 A 924 ILE ILE PRO GLU LEU PRO SER VAL THR GLN SER GLY LYS SEQRES 40 A 924 ARG THR ALA VAL LYS THR PHE ALA ALA GLN LYS VAL GLU SEQRES 41 A 924 GLN TRP GLN LEU SER ASN GLY ASP ARG VAL VAL TRP LEU SEQRES 42 A 924 ARG ALA PRO GLU ALA GLY LYS LYS VAL TYR LEU THR ALA SEQRES 43 A 924 THR SER GLN ALA GLY PHE MET ALA THR ALA MET ASN PRO SEQRES 44 A 924 TRP GLN ALA GLN LEU ALA SER GLN LEU VAL ASN GLN SER SEQRES 45 A 924 GLY PRO ALA THR TRP SER GLY GLU SER LEU SER ASN TRP SEQRES 46 A 924 LYS LYS GLU LYS THR LEU SER LEU SER ILE ASP GLN GLU SEQRES 47 A 924 ALA ASP GLN LEU THR LEU SER GLY THR ALA PRO THR GLU SEQRES 48 A 924 GLN LEU ALA SER LEU PHE GLY LEU TYR ARG GLU LEU ASN SEQRES 49 A 924 VAL ALA PRO GLY ILE ASP PRO ASP VAL MET LYS GLU SER SEQRES 50 A 924 MET MET SER LEU ALA ARG GLN LYS ALA ASN ASP ASP GLN SEQRES 51 A 924 SER VAL GLY GLY LYS ARG ALA SER GLU MET THR LYS LEU SEQRES 52 A 924 ARG PHE GLY GLU PRO ALA TRP GLN GLN PRO GLU ILE ALA SEQRES 53 A 924 GLU LEU LYS LYS ILE SER ALA PRO ALA LEU LEU SER GLN SEQRES 54 A 924 TRP HIS LYS ALA ALA SER ALA PRO VAL THR TYR TYR LEU SEQRES 55 A 924 ILE ALA ASP MET PRO ALA THR GLN LEU LEU PRO GLN VAL SEQRES 56 A 924 GLU ARG TYR LEU ALA THR ILE PRO ARG GLN PRO ALA SER SEQRES 57 A 924 GLU VAL LYS GLN HIS LEU ALA LEU SER GLY LYS ARG GLU SEQRES 58 A 924 ALA THR SER ALA ILE ASN VAL GLU PRO ARG ALA ASP ILE SEQRES 59 A 924 LEU THR TRP SER PHE THR PRO HIS ALA TRP THR PRO GLN SEQRES 60 A 924 ALA ALA VAL GLN VAL SER ILE ALA ARG ASN ILE ALA SER SEQRES 61 A 924 LYS TYR LEU LYS THR SER LEU ARG ASP ASP ALA LEU GLY SEQRES 62 A 924 ILE TYR ARG MET ARG VAL ASP SER GLU LEU GLU ASP LYS SEQRES 63 A 924 LYS GLN ARG ILE GLU THR GLU VAL SER PHE THR SER ALA SEQRES 64 A 924 PRO GLU ARG ALA GLN GLU LEU TRP THR LEU ALA GLU GLN SEQRES 65 A 924 ALA PHE SER GLU LEU PRO THR LYS ILE THR GLN GLN ASP SEQRES 66 A 924 VAL ASP GLU GLN LYS ALA GLN PHE ILE ARG ALA GLU LYS SEQRES 67 A 924 GLY ARG GLN GLY ASP LEU THR THR ILE GLN ARG ARG LEU SEQRES 68 A 924 ILE LEU SER TYR ARG HIS TYR ASN ASP PRO ARG TYR LEU SEQRES 69 A 924 SER ASN ALA SER LYS LEU ALA ASP SER ILE THR LEU GLU SEQRES 70 A 924 SER VAL ARG ALA MET SER ALA LYS LEU TYR ASN PRO ASP SEQRES 71 A 924 ASN ARG VAL LEU TYR ILE THR LEU PRO GLN GLU VAL LYS SEQRES 72 A 924 GLU SEQRES 1 F 104 ALA THR TYR LYS VAL LYS PHE ILE THR PRO GLU GLY GLU SEQRES 2 F 104 LEU GLU VAL GLU CYS ASP ASP ASP VAL TYR VAL LEU ASP SEQRES 3 F 104 ALA ALA GLU GLU ALA GLY ILE ASP LEU PRO TYR SER CYS SEQRES 4 F 104 ARG ALA GLY SER CYS SER SER CYS ALA GLY LYS VAL VAL SEQRES 5 F 104 SER GLY SER VAL ASP GLN SER ASP GLN SER PHE LEU ASP SEQRES 6 F 104 ASP GLU GLN ILE GLY GLU GLY PHE VAL LEU THR CYS ALA SEQRES 7 F 104 ALA TYR PRO THR SER ASP VAL THR ILE GLU THR HIS LYS SEQRES 8 F 104 GLU GLU ALA ILE MET LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 104 ALA THR TYR LYS VAL LYS PHE ILE THR PRO GLU GLY GLU SEQRES 2 C 104 LEU GLU VAL GLU CYS ASP ASP ASP VAL TYR VAL LEU ASP SEQRES 3 C 104 ALA ALA GLU GLU ALA GLY ILE ASP LEU PRO TYR SER CYS SEQRES 4 C 104 ARG ALA GLY SER CYS SER SER CYS ALA GLY LYS VAL VAL SEQRES 5 C 104 SER GLY SER VAL ASP GLN SER ASP GLN SER PHE LEU ASP SEQRES 6 C 104 ASP GLU GLN ILE GLY GLU GLY PHE VAL LEU THR CYS ALA SEQRES 7 C 104 ALA TYR PRO THR SER ASP VAL THR ILE GLU THR HIS LYS SEQRES 8 C 104 GLU GLU ALA ILE MET LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *50(H2 O) HELIX 1 AA1 GLY A 67 GLU A 71 5 5 HELIX 2 AA2 LYS A 72 SER A 76 5 5 HELIX 3 AA3 GLY A 77 VAL A 86 1 10 HELIX 4 AA4 GLY A 96 GLN A 104 1 9 HELIX 5 AA5 LYS A 129 LEU A 132 5 4 HELIX 6 AA6 ASP A 133 HIS A 147 1 15 HELIX 7 AA7 LEU A 151 LYS A 169 1 19 HELIX 8 AA8 GLY A 171 ARG A 185 1 15 HELIX 9 AA9 THR A 198 THR A 205 1 8 HELIX 10 AB1 PRO A 206 TYR A 218 1 13 HELIX 11 AB2 HIS A 219 SER A 221 5 3 HELIX 12 AB3 THR A 232 ALA A 245 1 14 HELIX 13 AB4 SER A 296 GLN A 318 1 23 HELIX 14 AB5 LYS A 319 LEU A 322 5 4 HELIX 15 AB6 GLY A 353 TYR A 371 1 19 HELIX 16 AB7 ASN A 374 SER A 393 1 20 HELIX 17 AB8 GLU A 400 GLN A 414 1 15 HELIX 18 AB9 GLY A 420 ASP A 433 1 14 HELIX 19 AC1 LYS A 436 SER A 450 1 15 HELIX 20 AC2 LYS A 469 ALA A 483 1 15 HELIX 21 AC3 ALA A 515 GLN A 517 5 3 HELIX 22 AC4 ALA A 535 GLY A 539 5 5 HELIX 23 AC5 ASN A 558 GLY A 573 1 16 HELIX 24 AC6 SER A 578 LYS A 589 1 12 HELIX 25 AC7 GLN A 612 ALA A 626 1 15 HELIX 26 AC8 ASP A 630 ASP A 649 1 20 HELIX 27 AC9 SER A 651 PHE A 665 1 15 HELIX 28 AD1 GLU A 674 LYS A 680 1 7 HELIX 29 AD2 SER A 682 SER A 695 1 14 HELIX 30 AD3 PRO A 707 LEU A 719 1 13 HELIX 31 AD4 THR A 765 SER A 786 1 22 HELIX 32 AD5 LEU A 787 ARG A 788 5 2 HELIX 33 AD6 ASP A 789 LEU A 792 5 4 HELIX 34 AD7 GLN A 824 LEU A 837 1 14 HELIX 35 AD8 PRO A 838 LYS A 840 5 3 HELIX 36 AD9 THR A 842 GLN A 861 1 20 HELIX 37 AE1 ASP A 863 ASN A 879 1 17 HELIX 38 AE2 PRO A 881 SER A 885 5 5 HELIX 39 AE3 ASN A 886 ILE A 894 5 9 HELIX 40 AE4 THR A 895 ALA A 904 1 10 HELIX 41 AE5 TYR F 24 GLY F 33 1 10 SHEET 1 AA1 2 SER A 30 PRO A 31 0 SHEET 2 AA1 2 THR A 398 ARG A 399 -1 O ARG A 399 N SER A 30 SHEET 1 AA2 6 VAL A 34 THR A 39 0 SHEET 2 AA2 6 ARG A 45 GLN A 50 -1 O LEU A 48 N LYS A 36 SHEET 3 AA2 6 MET A 223 GLY A 229 1 O LEU A 225 N THR A 47 SHEET 4 AA2 6 VAL A 58 VAL A 64 -1 N ARG A 61 O MET A 226 SHEET 5 AA2 6 THR A 121 MET A 125 -1 O THR A 121 N VAL A 64 SHEET 6 AA2 6 TYR A 112 THR A 116 -1 N ASN A 113 O MET A 124 SHEET 1 AA3 5 GLN A 265 ARG A 270 0 SHEET 2 AA3 5 ASP A 452 SER A 458 1 O THR A 453 N LYS A 267 SHEET 3 AA3 5 GLN A 280 ASN A 288 -1 N GLN A 280 O SER A 458 SHEET 4 AA3 5 THR A 340 VAL A 349 -1 O LEU A 343 N TYR A 285 SHEET 5 AA3 5 ALA A 326 ASP A 335 -1 N ARG A 332 O GLY A 344 SHEET 1 AA4 7 ARG A 508 PHE A 514 0 SHEET 2 AA4 7 VAL A 519 LEU A 524 -1 O VAL A 519 N PHE A 514 SHEET 3 AA4 7 ARG A 529 LEU A 533 -1 O VAL A 530 N TRP A 522 SHEET 4 AA4 7 VAL A 698 ALA A 704 1 O LEU A 702 N LEU A 533 SHEET 5 AA4 7 LYS A 541 SER A 548 -1 N THR A 545 O TYR A 701 SHEET 6 AA4 7 LEU A 602 PRO A 609 -1 O ALA A 608 N VAL A 542 SHEET 7 AA4 7 SER A 592 GLN A 597 -1 N ASP A 596 O THR A 603 SHEET 1 AA5 5 LYS A 739 ASN A 747 0 SHEET 2 AA5 5 ARG A 912 PRO A 919 1 O LEU A 918 N SER A 744 SHEET 3 AA5 5 ALA A 752 PRO A 761 -1 N LEU A 755 O TYR A 915 SHEET 4 AA5 5 ARG A 809 SER A 818 -1 O PHE A 816 N ILE A 754 SHEET 5 AA5 5 ILE A 794 GLU A 804 -1 N ASP A 800 O GLU A 813 SHEET 1 AA6 2 THR F 3 VAL F 6 0 SHEET 2 AA6 2 VAL F 17 ASP F 20 -1 O CYS F 19 N TYR F 4 CISPEP 1 GLY A 53 PRO A 54 0 -4.35 CRYST1 82.578 127.260 133.205 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007507 0.00000