HEADER PROTEIN BINDING 18-SEP-17 6B1D TITLE STRUCTURE OF PR 10 ALLERGEN ARA H 8.01 WITH QUERCETIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARA H 8 ALLERGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: PEANUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLANT PROTEIN, PEANUT, ALLERGEN, QUERCETIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,J.YARBROUGH,J.MCBRIDE,B.K.HURLBURT,S.J.MALEKI,S.S.POTE, AUTHOR 2 M.CHRUSZCZ REVDAT 3 04-OCT-23 6B1D 1 HETSYN REVDAT 2 29-JUL-20 6B1D 1 COMPND REMARK HETNAM SITE REVDAT 1 19-SEP-18 6B1D 0 JRNL AUTH L.R.OFFERMANN,J.YARBROUGH,J.MCBRIDE,B.K.HURLBURT,S.J.MALEKI, JRNL AUTH 2 S.S.POTE,M.CHRUSZCZ JRNL TITL STRUCTURE OF PR 10 ALLERGEN ARA H 8.01 WITH QUERCETIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 15747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -4.71000 REMARK 3 B33 (A**2) : 3.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.60000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3623 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3411 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4925 ; 1.643 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7929 ; 3.770 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 6.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;33.928 ;26.471 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 597 ;13.936 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;17.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4056 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 681 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 1.848 ; 3.545 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1868 ; 1.848 ; 3.544 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2331 ; 3.189 ; 5.312 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2332 ; 3.189 ; 5.313 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 1.656 ; 3.787 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1754 ; 1.654 ; 3.787 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2595 ; 2.814 ; 5.620 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3900 ; 6.110 ;30.818 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3894 ; 6.096 ;30.798 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 157 B 2 157 14718 0.16 0.05 REMARK 3 2 A 2 157 C 2 157 15442 0.14 0.05 REMARK 3 3 B 2 157 C 2 157 15744 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 46.2400 19.5680 -16.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.0422 T22: 0.2580 REMARK 3 T33: 0.1648 T12: -0.0590 REMARK 3 T13: 0.0196 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.9801 L22: 3.3347 REMARK 3 L33: 1.8682 L12: 0.1729 REMARK 3 L13: -0.8503 L23: 0.5444 REMARK 3 S TENSOR REMARK 3 S11: 0.1565 S12: -0.4530 S13: -0.2494 REMARK 3 S21: -0.0103 S22: -0.1622 S23: -0.4654 REMARK 3 S31: -0.2254 S32: 0.3403 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9820 0.0780 13.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.3408 REMARK 3 T33: 0.0749 T12: 0.0022 REMARK 3 T13: -0.1440 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.5115 L22: 2.5451 REMARK 3 L33: 1.6755 L12: 1.0026 REMARK 3 L13: -1.3090 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: -0.1485 S13: -0.1306 REMARK 3 S21: 0.5046 S22: -0.1024 S23: -0.3574 REMARK 3 S31: -0.0261 S32: 0.0692 S33: 0.0191 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 157 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0820 23.7930 -1.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.1763 REMARK 3 T33: 0.0477 T12: -0.0350 REMARK 3 T13: -0.0567 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.2950 L22: 2.7644 REMARK 3 L33: 1.9179 L12: -0.0091 REMARK 3 L13: -0.9598 L23: -0.1703 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: -0.0977 S13: -0.1056 REMARK 3 S21: 0.0699 S22: -0.0806 S23: -0.2257 REMARK 3 S31: -0.2244 S32: 0.3224 S33: 0.0565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6B1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000228699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : 0.57700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4MAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.96900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.96900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASN A 77 CG OD1 ND2 REMARK 470 ASN A 81 CG OD1 ND2 REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ASP B 124 CG OD1 OD2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS C 126 CG CD CE NZ REMARK 470 LYS C 134 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 44 CD GLU C 44 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 8.04 90.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1113 DISTANCE = 5.87 ANGSTROMS DBREF 6B1D A 2 157 UNP Q6VT83 Q6VT83_ARAHY 2 157 DBREF 6B1D B 2 157 UNP Q6VT83 Q6VT83_ARAHY 2 157 DBREF 6B1D C 2 157 UNP Q6VT83 Q6VT83_ARAHY 2 157 SEQRES 1 A 156 GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR VAL SEQRES 2 A 156 PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA ASP SEQRES 3 A 156 SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER VAL SEQRES 4 A 156 GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE LYS SEQRES 5 A 156 LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE ILE SEQRES 6 A 156 LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR ALA SEQRES 7 A 156 TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO PRO SEQRES 8 A 156 THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL GLU SEQRES 9 A 156 GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU LYS SEQRES 10 A 156 TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU GLU SEQRES 11 A 156 LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE ARG SEQRES 12 A 156 ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN TYR SEQRES 1 B 156 GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR VAL SEQRES 2 B 156 PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA ASP SEQRES 3 B 156 SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER VAL SEQRES 4 B 156 GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE LYS SEQRES 5 B 156 LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE ILE SEQRES 6 B 156 LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR ALA SEQRES 7 B 156 TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO PRO SEQRES 8 B 156 THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL GLU SEQRES 9 B 156 GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU LYS SEQRES 10 B 156 TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU GLU SEQRES 11 B 156 LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE ARG SEQRES 12 B 156 ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN TYR SEQRES 1 C 156 GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR VAL SEQRES 2 C 156 PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA ASP SEQRES 3 C 156 SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER VAL SEQRES 4 C 156 GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE LYS SEQRES 5 C 156 LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE ILE SEQRES 6 C 156 LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR ALA SEQRES 7 C 156 TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO PRO SEQRES 8 C 156 THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL GLU SEQRES 9 C 156 GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU LYS SEQRES 10 C 156 TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU GLU SEQRES 11 C 156 LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE ARG SEQRES 12 C 156 ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN TYR HET QUE A1001 22 HET QUE C1001 22 HET BGC C1002 12 HETNAM QUE 3,5,7,3',4'-PENTAHYDROXYFLAVONE HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN QUE QUERCETIN HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 4 QUE 2(C15 H10 O7) FORMUL 6 BGC C6 H12 O6 FORMUL 7 HOH *67(H2 O) HELIX 1 AA1 PRO A 15 ASP A 25 1 11 HELIX 2 AA2 ASP A 25 ILE A 34 1 10 HELIX 3 AA3 GLU A 75 ASN A 77 5 3 HELIX 4 AA4 ASP A 128 ASN A 153 1 26 HELIX 5 AA5 PRO B 15 ASP B 25 1 11 HELIX 6 AA6 ASP B 25 ILE B 34 1 10 HELIX 7 AA7 ASP B 128 ASN B 153 1 26 HELIX 8 AA8 PRO C 15 ASP C 25 1 11 HELIX 9 AA9 ASP C 25 ILE C 34 1 10 HELIX 10 AB1 GLU C 75 ASN C 77 5 3 HELIX 11 AB2 ASP C 128 ASN C 153 1 26 SHEET 1 AA1 7 VAL A 3 SER A 12 0 SHEET 2 AA1 7 SER A 111 THR A 121 -1 O LEU A 117 N PHE A 6 SHEET 3 AA1 7 ALA A 94 GLU A 105 -1 N LYS A 102 O LYS A 114 SHEET 4 AA1 7 ALA A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 AA1 7 GLU A 62 ASP A 74 -1 N ASP A 74 O ALA A 79 SHEET 6 AA1 7 ILE A 52 GLU A 59 -1 N LEU A 55 O ILE A 66 SHEET 7 AA1 7 VAL A 37 GLU A 44 -1 N SER A 39 O THR A 56 SHEET 1 AA2 7 VAL B 3 SER B 12 0 SHEET 2 AA2 7 SER B 111 THR B 121 -1 O LEU B 115 N ASP B 8 SHEET 3 AA2 7 ALA B 94 GLU B 105 -1 N LYS B 102 O LYS B 114 SHEET 4 AA2 7 ALA B 79 GLY B 87 -1 N TYR B 82 O PHE B 99 SHEET 5 AA2 7 GLU B 62 ASP B 74 -1 N LEU B 67 O VAL B 85 SHEET 6 AA2 7 ILE B 52 GLU B 59 -1 N LEU B 55 O ILE B 66 SHEET 7 AA2 7 VAL B 37 GLU B 44 -1 N SER B 39 O THR B 56 SHEET 1 AA3 7 VAL C 3 SER C 12 0 SHEET 2 AA3 7 SER C 111 THR C 121 -1 O TYR C 119 N PHE C 4 SHEET 3 AA3 7 ALA C 94 GLU C 105 -1 N LYS C 102 O LYS C 114 SHEET 4 AA3 7 ALA C 79 GLY C 87 -1 N TYR C 82 O PHE C 99 SHEET 5 AA3 7 GLU C 62 ASP C 74 -1 N ASP C 74 O ALA C 79 SHEET 6 AA3 7 ILE C 52 GLU C 59 -1 N LEU C 55 O ILE C 66 SHEET 7 AA3 7 VAL C 37 GLU C 44 -1 N SER C 39 O THR C 56 CRYST1 173.938 52.000 55.620 90.00 97.71 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005749 0.000000 0.000779 0.00000 SCALE2 0.000000 0.019231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018143 0.00000