HEADER LIGASE 18-SEP-17 6B1P TITLE CRYSTAL STRUCTURE OF GLUTAMATE-TRNA SYNTHETASE FROM HELICOBACTER TITLE 2 PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE--TRNA LIGASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMYL-TRNA SYNTHETASE 1,GLURS 1; COMPND 5 EC: 6.1.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: GLTX1, HPG27_434; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HEPYC.01187.A.B1 KEYWDS SSGCID, GLUTAMATE--TRNA LIGASE, HELICOBACTER PYLORI, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6B1P 1 REMARK REVDAT 1 27-SEP-17 6B1P 0 JRNL AUTH D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF GLUTAMATE-TRNA SYNTHETASE FROM JRNL TITL 2 HELICOBACTER PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 17249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5681 - 5.7197 0.99 1441 161 0.2173 0.2242 REMARK 3 2 5.7197 - 4.5415 1.00 1365 151 0.2000 0.2650 REMARK 3 3 4.5415 - 3.9678 0.99 1347 151 0.1944 0.2344 REMARK 3 4 3.9678 - 3.6052 0.99 1323 146 0.2181 0.2963 REMARK 3 5 3.6052 - 3.3469 0.99 1315 147 0.2489 0.3164 REMARK 3 6 3.3469 - 3.1497 0.98 1297 146 0.2797 0.2977 REMARK 3 7 3.1497 - 2.9920 0.98 1269 143 0.2883 0.3274 REMARK 3 8 2.9920 - 2.8618 0.97 1282 141 0.2821 0.3588 REMARK 3 9 2.8618 - 2.7516 0.95 1253 141 0.2828 0.3397 REMARK 3 10 2.7516 - 2.6567 0.95 1235 141 0.2783 0.3275 REMARK 3 11 2.6567 - 2.5736 0.93 1210 137 0.2802 0.3096 REMARK 3 12 2.5736 - 2.5001 0.91 1172 135 0.3132 0.3807 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3287 REMARK 3 ANGLE : 0.502 4468 REMARK 3 CHIRALITY : 0.040 513 REMARK 3 PLANARITY : 0.003 579 REMARK 3 DIHEDRAL : 8.408 1956 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 69.4212 37.6773 29.1129 REMARK 3 T TENSOR REMARK 3 T11: 0.4160 T22: 0.3698 REMARK 3 T33: 0.2772 T12: 0.0321 REMARK 3 T13: 0.0161 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.7662 L22: 5.9489 REMARK 3 L33: 3.7623 L12: 1.5956 REMARK 3 L13: 2.8131 L23: -1.3455 REMARK 3 S TENSOR REMARK 3 S11: -0.2796 S12: 0.5528 S13: -0.2959 REMARK 3 S21: -0.2392 S22: -0.2289 S23: 0.1534 REMARK 3 S31: -0.3865 S32: 0.3096 S33: 0.3629 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5731 48.2187 28.5481 REMARK 3 T TENSOR REMARK 3 T11: 0.6181 T22: 0.4294 REMARK 3 T33: 0.4210 T12: -0.0677 REMARK 3 T13: 0.0107 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 3.7213 L22: 0.8622 REMARK 3 L33: 2.4625 L12: -0.4095 REMARK 3 L13: 2.8933 L23: -0.2958 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: 0.8596 S13: 0.6543 REMARK 3 S21: -0.0165 S22: -0.1751 S23: -0.3971 REMARK 3 S31: -0.2785 S32: 0.6512 S33: 0.2435 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5092 44.1189 30.5469 REMARK 3 T TENSOR REMARK 3 T11: 0.4470 T22: 0.3328 REMARK 3 T33: 0.3439 T12: -0.0072 REMARK 3 T13: 0.0662 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 6.2197 L22: 6.3006 REMARK 3 L33: 6.9146 L12: -0.6815 REMARK 3 L13: 0.1979 L23: 2.3270 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.0533 S13: -0.2415 REMARK 3 S21: 0.1335 S22: -0.2987 S23: 0.6871 REMARK 3 S31: 0.1975 S32: -1.2235 S33: 0.1173 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2584 35.3523 26.8704 REMARK 3 T TENSOR REMARK 3 T11: 0.4959 T22: 0.3104 REMARK 3 T33: 0.2632 T12: 0.0575 REMARK 3 T13: -0.0267 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 4.3070 L22: 5.0191 REMARK 3 L33: 2.0864 L12: -0.8584 REMARK 3 L13: -0.5096 L23: -0.2960 REMARK 3 S TENSOR REMARK 3 S11: -0.1959 S12: -0.1762 S13: -0.4104 REMARK 3 S21: 0.1349 S22: 0.3924 S23: 0.1470 REMARK 3 S31: 0.1346 S32: 0.1536 S33: -0.1798 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.9079 30.0773 36.6318 REMARK 3 T TENSOR REMARK 3 T11: 0.4626 T22: 0.2554 REMARK 3 T33: 0.5062 T12: -0.0003 REMARK 3 T13: -0.0450 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.0694 L22: 2.1208 REMARK 3 L33: 3.0848 L12: -0.7081 REMARK 3 L13: 0.6515 L23: 0.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: -0.1758 S13: -0.2493 REMARK 3 S21: 0.1399 S22: 0.1533 S23: -0.0946 REMARK 3 S31: 0.6029 S32: -0.3028 S33: -0.2895 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.9683 25.5129 37.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.5595 T22: 0.4242 REMARK 3 T33: 0.5177 T12: 0.1933 REMARK 3 T13: -0.0735 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.6853 L22: 2.7141 REMARK 3 L33: 4.3599 L12: -0.8308 REMARK 3 L13: 0.3957 L23: -0.0880 REMARK 3 S TENSOR REMARK 3 S11: 0.3164 S12: 0.2390 S13: -0.7980 REMARK 3 S21: -0.1785 S22: -0.0877 S23: -0.2207 REMARK 3 S31: 0.8875 S32: 0.7410 S33: -0.2251 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.3982 33.9450 55.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.6475 REMARK 3 T33: 0.4288 T12: 0.1305 REMARK 3 T13: -0.0371 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 3.2592 L22: 3.3015 REMARK 3 L33: 7.7294 L12: -0.7933 REMARK 3 L13: 3.8652 L23: -2.5071 REMARK 3 S TENSOR REMARK 3 S11: -0.2169 S12: 0.3616 S13: 0.0675 REMARK 3 S21: 0.0044 S22: 0.0613 S23: 0.1790 REMARK 3 S31: -0.0217 S32: 0.6488 S33: 0.1362 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.1201 29.3345 66.8363 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 1.0365 REMARK 3 T33: 0.6469 T12: -0.0254 REMARK 3 T13: -0.3347 T23: 0.2369 REMARK 3 L TENSOR REMARK 3 L11: 3.4380 L22: 3.7818 REMARK 3 L33: 1.9428 L12: -0.0925 REMARK 3 L13: -2.3722 L23: 0.9628 REMARK 3 S TENSOR REMARK 3 S11: -0.2577 S12: 1.1198 S13: 0.4552 REMARK 3 S21: 0.4980 S22: -0.5602 S23: -0.7084 REMARK 3 S31: -0.1322 S32: 1.0896 S33: 0.3104 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.562 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.836 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.15 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: 2JA2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPYC.01187.A.B1.PW38242 AT 20.6 MG/ML REMARK 280 WAS MIXED 1:1 WITH JCSG+ (A3): 0.2 M AMMONIUM CITRATE DIBASIC, REMARK 280 20% (W/V) PEG-3350, CRYOPROTECTED WITH 15% ETHYLENE GLYCOL. TRAY: REMARK 280 291377A3, PUCK: BEN7-8., PH 9.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 101.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 101.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLN A 113 REMARK 465 LYS A 114 REMARK 465 ALA A 115 REMARK 465 ARG A 116 REMARK 465 LYS A 117 REMARK 465 GLU A 118 REMARK 465 THR A 119 REMARK 465 PRO A 120 REMARK 465 ARG A 121 REMARK 465 TYR A 122 REMARK 465 ASP A 123 REMARK 465 ASN A 124 REMARK 465 ARG A 125 REMARK 465 TYR A 126 REMARK 465 ARG A 127 REMARK 465 ASP A 128 REMARK 465 PHE A 129 REMARK 465 LYS A 130 REMARK 465 GLY A 131 REMARK 465 THR A 132 REMARK 465 GLN A 339 REMARK 465 LEU A 340 REMARK 465 ASN A 401 REMARK 465 ASP A 402 REMARK 465 GLU A 403 REMARK 465 SER A 404 REMARK 465 ALA A 405 REMARK 465 LEU A 406 REMARK 465 GLU A 407 REMARK 465 ASN A 408 REMARK 465 ALA A 409 REMARK 465 ASN A 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 THR A 45 OG1 CG2 REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 SER A 77 OG REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ILE A 137 CG1 CG2 CD1 REMARK 470 ASN A 164 CG OD1 ND2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 HIS A 243 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 HIS A 302 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 SER A 333 OG REMARK 470 HIS A 334 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 ASN A 336 CG OD1 ND2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 350 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 369 CG1 CG2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 VAL A 375 CG1 CG2 REMARK 470 LYS A 377 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 LEU A 379 CG CD1 CD2 REMARK 470 GLN A 381 CG CD OE1 NE2 REMARK 470 ILE A 384 CG1 CG2 CD1 REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 LEU A 393 CG CD1 CD2 REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 470 LEU A 395 CG CD1 CD2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 ASN A 399 CG OD1 ND2 REMARK 470 PHE A 400 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 410 CG SD CE REMARK 470 HIS A 411 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 412 CG CD CE NZ REMARK 470 ILE A 413 CG1 CG2 CD1 REMARK 470 ILE A 414 CG1 CG2 CD1 REMARK 470 GLU A 415 CG CD OE1 OE2 REMARK 470 LYS A 418 CG CD CE NZ REMARK 470 LYS A 420 CG CD CE NZ REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 THR A 451 OG1 CG2 REMARK 470 VAL A 454 CG1 CG2 REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 LYS A 462 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 47 52.80 -90.99 REMARK 500 ALA A 245 72.89 -154.26 REMARK 500 TYR A 272 -99.83 -92.77 REMARK 500 LYS A 378 56.25 -99.41 REMARK 500 ASN A 399 -145.34 -142.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-HEPYC.01187.A RELATED DB: TARGETTRACK DBREF 6B1P A 1 463 UNP B5Z6J9 SYE1_HELPG 1 463 SEQADV 6B1P MET A -7 UNP B5Z6J9 INITIATING METHIONINE SEQADV 6B1P ALA A -6 UNP B5Z6J9 EXPRESSION TAG SEQADV 6B1P HIS A -5 UNP B5Z6J9 EXPRESSION TAG SEQADV 6B1P HIS A -4 UNP B5Z6J9 EXPRESSION TAG SEQADV 6B1P HIS A -3 UNP B5Z6J9 EXPRESSION TAG SEQADV 6B1P HIS A -2 UNP B5Z6J9 EXPRESSION TAG SEQADV 6B1P HIS A -1 UNP B5Z6J9 EXPRESSION TAG SEQADV 6B1P HIS A 0 UNP B5Z6J9 EXPRESSION TAG SEQRES 1 A 471 MET ALA HIS HIS HIS HIS HIS HIS MET SER LEU ILE VAL SEQRES 2 A 471 THR ARG PHE ALA PRO SER PRO THR GLY TYR LEU HIS ILE SEQRES 3 A 471 GLY GLY LEU ARG THR ALA ILE PHE ASN TYR LEU PHE ALA SEQRES 4 A 471 ARG ALA ASN GLN GLY LYS PHE PHE LEU ARG ILE GLU ASP SEQRES 5 A 471 THR ASP LEU SER ARG ASN SER ILE GLU ALA ALA ASN ALA SEQRES 6 A 471 ILE ILE GLU ALA PHE LYS TRP VAL GLY LEU GLU TYR ASP SEQRES 7 A 471 GLY GLU ILE LEU TYR GLN SER LYS ARG PHE GLU ILE TYR SEQRES 8 A 471 LYS GLU TYR ILE GLN LYS LEU LEU ASP GLU ASP LYS ALA SEQRES 9 A 471 TYR TYR CYS TYR MET SER LYS ASP GLU LEU ASP ALA LEU SEQRES 10 A 471 ARG GLU GLU GLN LYS ALA ARG LYS GLU THR PRO ARG TYR SEQRES 11 A 471 ASP ASN ARG TYR ARG ASP PHE LYS GLY THR PRO PRO LYS SEQRES 12 A 471 GLY ILE GLU PRO VAL VAL ARG ILE LYS VAL PRO GLN ASN SEQRES 13 A 471 GLU VAL ILE GLY PHE ASN ASP GLY VAL LYS GLY GLU VAL SEQRES 14 A 471 LYS VAL ASN THR ASN GLU LEU ASP ASP PHE ILE ILE ALA SEQRES 15 A 471 ARG SER ASP GLY THR PRO THR TYR ASN PHE VAL VAL ILE SEQRES 16 A 471 VAL ASP ASP ALA LEU MET GLY ILE THR ASP VAL ILE ARG SEQRES 17 A 471 GLY ASP ASP HIS LEU SER ASN THR PRO LYS GLN ILE VAL SEQRES 18 A 471 LEU TYR LYS ALA LEU ASN PHE LYS ILE PRO ASN PHE PHE SEQRES 19 A 471 HIS VAL PRO MET ILE LEU ASN GLU GLU GLY GLN LYS LEU SEQRES 20 A 471 SER LYS ARG HIS GLY ALA THR ASN VAL MET ASP TYR GLN SEQRES 21 A 471 GLU MET GLY TYR LEU LYS GLU ALA LEU VAL ASN PHE LEU SEQRES 22 A 471 VAL ARG LEU GLY TRP SER TYR GLN ASP LYS GLU ILE PHE SEQRES 23 A 471 SER MET GLN GLU LEU LEU GLU CYS PHE ASP PRO LYS ASP SEQRES 24 A 471 LEU ASN SER SER PRO SER CYS PHE SER TRP HIS LYS LEU SEQRES 25 A 471 ASN TRP LEU ASN ALA HIS TYR LEU LYS ASN GLN SER ALA SEQRES 26 A 471 GLN LYS LEU LEU GLU LEU LEU LYS PRO PHE SER PHE SER SEQRES 27 A 471 ASP LEU SER HIS LEU ASN PRO ALA GLN LEU ASP ARG LEU SEQRES 28 A 471 LEU ASP ALA LEU LYS GLU ARG SER GLN THR LEU LYS GLU SEQRES 29 A 471 LEU ALA LEU LYS ILE ASP GLU VAL LEU ILE ALA PRO VAL SEQRES 30 A 471 GLU TYR GLU GLU LYS VAL PHE LYS LYS LEU ASN GLN ALA SEQRES 31 A 471 LEU ILE MET PRO LEU LEU GLU LYS PHE LYS LEU GLU LEU SEQRES 32 A 471 LYS GLU ALA ASN PHE ASN ASP GLU SER ALA LEU GLU ASN SEQRES 33 A 471 ALA MET HIS LYS ILE ILE GLU GLU GLU LYS ILE LYS ALA SEQRES 34 A 471 GLY SER PHE MET GLN PRO LEU ARG LEU ALA LEU LEU GLY SEQRES 35 A 471 LYS GLY GLY GLY ILE GLY LEU LYS GLU ALA LEU PHE ILE SEQRES 36 A 471 LEU GLY LYS THR GLU SER VAL LYS ARG ILE GLU ASN PHE SEQRES 37 A 471 LEU LYS ASN HET EDO A 501 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *27(H2 O) HELIX 1 AA1 HIS A 17 ASN A 34 1 18 HELIX 2 AA2 SER A 48 GLY A 66 1 19 HELIX 3 AA3 ARG A 79 GLU A 93 1 15 HELIX 4 AA4 SER A 102 GLU A 111 1 10 HELIX 5 AA5 ASN A 166 LEU A 168 5 3 HELIX 6 AA6 THR A 181 MET A 193 1 13 HELIX 7 AA7 ASP A 203 LEU A 205 5 3 HELIX 8 AA8 SER A 206 LEU A 218 1 13 HELIX 9 AA9 ASN A 247 GLY A 255 1 9 HELIX 10 AB1 LEU A 257 ARG A 267 1 11 HELIX 11 AB2 SER A 279 PHE A 287 1 9 HELIX 12 AB3 ASP A 288 LEU A 292 5 5 HELIX 13 AB4 SER A 300 ASN A 314 1 15 HELIX 14 AB5 ALA A 317 LEU A 324 1 8 HELIX 15 AB6 PRO A 337 ALA A 338 5 2 HELIX 16 AB7 ASP A 341 ASP A 341 5 1 HELIX 17 AB8 ARG A 342 GLU A 349 1 8 HELIX 18 AB9 THR A 353 ILE A 366 1 14 HELIX 19 AC1 GLU A 372 LYS A 377 1 6 HELIX 20 AC2 ASN A 380 ALA A 398 1 19 HELIX 21 AC3 LYS A 420 LEU A 433 1 14 HELIX 22 AC4 GLY A 440 LEU A 448 1 9 HELIX 23 AC5 GLY A 449 LYS A 462 1 14 SHEET 1 AA1 3 VAL A 5 PHE A 8 0 SHEET 2 AA1 3 LYS A 37 ILE A 42 1 O ARG A 41 N PHE A 8 SHEET 3 AA1 3 LEU A 74 TYR A 75 1 O LEU A 74 N ILE A 42 SHEET 1 AA2 3 ALA A 96 CYS A 99 0 SHEET 2 AA2 3 VAL A 140 ILE A 143 -1 O VAL A 140 N CYS A 99 SHEET 3 AA2 3 ILE A 172 ALA A 174 -1 O ILE A 173 N VAL A 141 SHEET 1 AA3 2 VAL A 150 ASP A 155 0 SHEET 2 AA3 2 GLY A 159 ASN A 164 -1 O GLY A 159 N ASP A 155 SHEET 1 AA4 2 ASP A 197 GLY A 201 0 SHEET 2 AA4 2 ASN A 224 VAL A 228 1 O PHE A 226 N ARG A 200 SITE 1 AC1 2 PHE A 171 ILE A 172 CRYST1 203.050 44.600 54.120 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018477 0.00000