HEADER ISOMERASE/ISOMERASE INHIBITOR 19-SEP-17 6B2C TITLE MACROPHAGE MIGRATION INHIBITORY FACTOR IN COMPLEX WITH A TITLE 2 NAPHTHYRIDINONE INHIBITOR (4B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MIF,GLYCOSYLATION-INHIBITING FACTOR,GIF,L-DOPACHROME COMPND 5 ISOMERASE,L-DOPACHROME TAUTOMERASE,PHENYLPYRUVATE TAUTOMERASE; COMPND 6 EC: 5.3.2.1,5.3.3.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIF, GLIF, MMIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS CD74 BINDING, TAUTOMERASE, INHIBITOR, COMPLEX, ISOMERASE-ISOMERASE KEYWDS 2 INHIBITOR COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.KRIMMER,M.J.ROBERTSON,W.L.JORGENSEN REVDAT 4 04-OCT-23 6B2C 1 REMARK REVDAT 3 01-JAN-20 6B2C 1 REMARK REVDAT 2 17-JAN-18 6B2C 1 REMARK REVDAT 1 03-JAN-18 6B2C 0 JRNL AUTH T.K.DAWSON,P.DZIEDZIC,M.J.ROBERTSON,J.A.CISNEROS, JRNL AUTH 2 S.G.KRIMMER,A.S.NEWTON,J.TIRADO-RIVES,W.L.JORGENSEN JRNL TITL ADDING A HYDROGEN BOND MAY NOT HELP: NAPHTHYRIDINONE VS JRNL TITL 2 QUINOLINE INHIBITORS OF MACROPHAGE MIGRATION INHIBITORY JRNL TITL 3 FACTOR. JRNL REF ACS MED CHEM LETT V. 8 1287 2017 JRNL REFN ISSN 1948-5875 JRNL PMID 29259749 JRNL DOI 10.1021/ACSMEDCHEMLETT.7B00384 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 38915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.9582 - 4.8184 0.98 2784 147 0.1868 0.1987 REMARK 3 2 4.8184 - 3.8246 0.97 2675 141 0.1597 0.1706 REMARK 3 3 3.8246 - 3.3412 0.99 2670 140 0.1835 0.2192 REMARK 3 4 3.3412 - 3.0357 0.99 2663 141 0.2140 0.2446 REMARK 3 5 3.0357 - 2.8181 0.99 2674 140 0.2115 0.2660 REMARK 3 6 2.8181 - 2.6519 0.99 2654 140 0.2034 0.2454 REMARK 3 7 2.6519 - 2.5191 1.00 2665 140 0.2035 0.2754 REMARK 3 8 2.5191 - 2.4095 0.99 2661 140 0.1844 0.1971 REMARK 3 9 2.4095 - 2.3167 1.00 2649 140 0.1784 0.2333 REMARK 3 10 2.3167 - 2.2368 1.00 2663 140 0.2079 0.2355 REMARK 3 11 2.2368 - 2.1668 1.00 2652 139 0.2031 0.2740 REMARK 3 12 2.1668 - 2.1049 1.00 2675 141 0.2158 0.2406 REMARK 3 13 2.1049 - 2.0495 1.00 2634 139 0.2251 0.2692 REMARK 3 14 2.0495 - 1.9995 0.84 2250 118 0.2618 0.3112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2677 REMARK 3 ANGLE : 0.762 3660 REMARK 3 CHIRALITY : 0.063 405 REMARK 3 PLANARITY : 0.006 482 REMARK 3 DIHEDRAL : 13.907 1582 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9323 38.3627 8.0573 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.4001 REMARK 3 T33: 0.3012 T12: -0.2567 REMARK 3 T13: 0.0379 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.4535 L22: 0.7299 REMARK 3 L33: 0.3921 L12: -0.5932 REMARK 3 L13: 0.6416 L23: -0.5301 REMARK 3 S TENSOR REMARK 3 S11: -0.2321 S12: -0.1736 S13: -0.0467 REMARK 3 S21: 0.1292 S22: 0.1685 S23: -0.0661 REMARK 3 S31: -0.2003 S32: 0.0329 S33: -0.2437 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 27:36) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2068 45.7153 13.4887 REMARK 3 T TENSOR REMARK 3 T11: 0.3778 T22: 0.4931 REMARK 3 T33: 0.4235 T12: -0.0671 REMARK 3 T13: -0.0284 T23: -0.1312 REMARK 3 L TENSOR REMARK 3 L11: 0.1995 L22: 0.4113 REMARK 3 L33: 0.2094 L12: -0.1751 REMARK 3 L13: 0.0227 L23: 0.1289 REMARK 3 S TENSOR REMARK 3 S11: -0.1253 S12: -0.9699 S13: 0.1351 REMARK 3 S21: 0.5764 S22: -0.4086 S23: 0.6836 REMARK 3 S31: 0.4289 S32: -0.4373 S33: -0.0080 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 37:54) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8017 35.2803 -1.4011 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.3529 REMARK 3 T33: 0.3711 T12: -0.1630 REMARK 3 T13: 0.0680 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.4597 L22: 1.0174 REMARK 3 L33: 0.6970 L12: 0.1571 REMARK 3 L13: 0.0332 L23: 0.3720 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: -0.2416 S13: -0.2873 REMARK 3 S21: -0.0783 S22: 0.0788 S23: -0.1498 REMARK 3 S31: -0.0196 S32: 0.3831 S33: 0.0092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 55:85) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8585 47.3963 1.6953 REMARK 3 T TENSOR REMARK 3 T11: 0.3727 T22: 0.3342 REMARK 3 T33: 0.3501 T12: -0.1505 REMARK 3 T13: -0.0186 T23: -0.0303 REMARK 3 L TENSOR REMARK 3 L11: 0.3535 L22: 0.2309 REMARK 3 L33: 0.4033 L12: 0.0542 REMARK 3 L13: 0.2997 L23: -0.2692 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: -0.0157 S13: 0.0762 REMARK 3 S21: -0.2671 S22: 0.0025 S23: 0.1032 REMARK 3 S31: -0.5120 S32: 0.0082 S33: -0.0159 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 86:96) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4590 44.4041 -0.6615 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.3597 REMARK 3 T33: 0.3296 T12: -0.2179 REMARK 3 T13: 0.0589 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.2385 L22: 0.1802 REMARK 3 L33: 0.4266 L12: -0.1836 REMARK 3 L13: 0.0993 L23: -0.2105 REMARK 3 S TENSOR REMARK 3 S11: -0.2546 S12: 0.1790 S13: 0.2084 REMARK 3 S21: -0.2507 S22: 0.0807 S23: -0.2357 REMARK 3 S31: -0.4604 S32: 0.2103 S33: -0.0154 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 97:114) REMARK 3 ORIGIN FOR THE GROUP (A): -43.4670 38.2643 2.9211 REMARK 3 T TENSOR REMARK 3 T11: 0.3517 T22: 0.4034 REMARK 3 T33: 0.4424 T12: -0.1377 REMARK 3 T13: -0.0192 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.3226 L22: 0.2239 REMARK 3 L33: 1.2336 L12: -0.0870 REMARK 3 L13: -0.0591 L23: 0.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.1443 S12: -0.2319 S13: 0.1648 REMARK 3 S21: -0.1247 S22: -0.1015 S23: 0.1186 REMARK 3 S31: -0.2193 S32: -0.5959 S33: -0.0402 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 1:15) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4247 25.7898 -10.4922 REMARK 3 T TENSOR REMARK 3 T11: 0.3750 T22: 0.3214 REMARK 3 T33: 0.3660 T12: -0.1032 REMARK 3 T13: 0.0580 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 0.7304 L22: 0.0362 REMARK 3 L33: 0.5308 L12: 0.0231 REMARK 3 L13: 0.4150 L23: 0.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: 0.1653 S13: -0.0761 REMARK 3 S21: -0.1280 S22: 0.2421 S23: -0.3748 REMARK 3 S31: -0.2261 S32: 0.3323 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 16:40) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7265 35.7870 -17.2061 REMARK 3 T TENSOR REMARK 3 T11: 0.6159 T22: 0.5516 REMARK 3 T33: 0.3927 T12: -0.3297 REMARK 3 T13: 0.1802 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.6319 L22: 0.5352 REMARK 3 L33: 0.3917 L12: 0.5548 REMARK 3 L13: 0.0330 L23: 0.1870 REMARK 3 S TENSOR REMARK 3 S11: -0.3291 S12: 0.5645 S13: -0.4380 REMARK 3 S21: -0.3499 S22: 0.0889 S23: -0.4252 REMARK 3 S31: -0.1374 S32: 0.7161 S33: 0.0381 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 41:54) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0160 18.4574 -7.1920 REMARK 3 T TENSOR REMARK 3 T11: 0.4595 T22: 0.2397 REMARK 3 T33: 0.4014 T12: -0.0824 REMARK 3 T13: -0.0009 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.9115 L22: 0.2716 REMARK 3 L33: 1.0601 L12: 0.4969 REMARK 3 L13: -0.6843 L23: -0.4181 REMARK 3 S TENSOR REMARK 3 S11: 0.1906 S12: -0.2202 S13: -0.9295 REMARK 3 S21: -0.3425 S22: -0.2575 S23: -0.4699 REMARK 3 S31: 0.6330 S32: 0.1323 S33: -0.0491 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 55:94) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4732 28.5194 -18.9287 REMARK 3 T TENSOR REMARK 3 T11: 0.5289 T22: 0.3732 REMARK 3 T33: 0.2955 T12: -0.1586 REMARK 3 T13: 0.0736 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.9400 L22: 0.2956 REMARK 3 L33: 0.6132 L12: 0.0802 REMARK 3 L13: 0.7857 L23: 0.1224 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: 0.3225 S13: -0.2789 REMARK 3 S21: -0.2821 S22: 0.2207 S23: 0.1901 REMARK 3 S31: -0.2453 S32: 0.3847 S33: 0.0063 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 95:114) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3881 44.2406 -9.9703 REMARK 3 T TENSOR REMARK 3 T11: 0.5402 T22: 0.2632 REMARK 3 T33: 0.2618 T12: -0.2510 REMARK 3 T13: -0.0549 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.8398 L22: 0.0003 REMARK 3 L33: 0.5535 L12: 0.0538 REMARK 3 L13: -0.3027 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.4609 S12: -0.0782 S13: -0.0079 REMARK 3 S21: -0.3941 S22: 0.1863 S23: 0.2164 REMARK 3 S31: -0.1893 S32: 0.1170 S33: -0.2091 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 1:26) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7531 18.9238 2.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.4609 T22: 0.2737 REMARK 3 T33: 0.2704 T12: -0.1809 REMARK 3 T13: -0.0298 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.7185 L22: 0.4638 REMARK 3 L33: 0.1182 L12: -0.1578 REMARK 3 L13: -0.3044 L23: 0.1026 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.1521 S13: -0.1560 REMARK 3 S21: -0.0191 S22: -0.0179 S23: -0.0668 REMARK 3 S31: 0.1722 S32: 0.0402 S33: 0.0027 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 27:40) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8025 19.4386 -8.8902 REMARK 3 T TENSOR REMARK 3 T11: 0.4874 T22: 0.3280 REMARK 3 T33: 0.3405 T12: -0.1709 REMARK 3 T13: -0.0469 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.8224 L22: 0.8353 REMARK 3 L33: 1.0322 L12: -0.5270 REMARK 3 L13: 0.4041 L23: -0.8884 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.2276 S13: -0.0576 REMARK 3 S21: -0.5482 S22: -0.0784 S23: 0.0644 REMARK 3 S31: 0.3582 S32: 0.2403 S33: 0.0456 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 41:54) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6277 28.9960 10.6825 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.4025 REMARK 3 T33: 0.3370 T12: -0.1528 REMARK 3 T13: -0.0330 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.2977 L22: 0.1647 REMARK 3 L33: 0.0031 L12: -0.1690 REMARK 3 L13: 0.0596 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.1886 S12: -0.4446 S13: -0.0885 REMARK 3 S21: 0.1166 S22: -0.0265 S23: -0.1702 REMARK 3 S31: 0.3349 S32: -0.1371 S33: 0.0003 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 55:84) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2108 27.8802 1.1908 REMARK 3 T TENSOR REMARK 3 T11: 0.3343 T22: 0.3423 REMARK 3 T33: 0.3190 T12: -0.3207 REMARK 3 T13: 0.0043 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.4169 L22: 1.2171 REMARK 3 L33: 0.2677 L12: 0.0427 REMARK 3 L13: -0.2741 L23: 0.2352 REMARK 3 S TENSOR REMARK 3 S11: 0.2334 S12: -0.1221 S13: 0.2341 REMARK 3 S21: -0.0053 S22: -0.4274 S23: 0.2753 REMARK 3 S31: -0.1854 S32: -0.4058 S33: -0.0138 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN C AND RESID 85:93) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9375 22.9230 12.9657 REMARK 3 T TENSOR REMARK 3 T11: 0.4900 T22: 0.4237 REMARK 3 T33: 0.3081 T12: -0.2465 REMARK 3 T13: 0.0993 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.2985 L22: 1.0779 REMARK 3 L33: 0.0754 L12: -0.3327 REMARK 3 L13: 0.1331 L23: -0.2532 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.4536 S13: -0.0974 REMARK 3 S21: 0.8078 S22: -0.2572 S23: 0.3397 REMARK 3 S31: 0.4931 S32: -0.3906 S33: -0.0647 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN C AND RESID 94:104) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1108 33.5485 -4.6231 REMARK 3 T TENSOR REMARK 3 T11: 0.4038 T22: 0.3112 REMARK 3 T33: 0.3593 T12: -0.0965 REMARK 3 T13: -0.0432 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.2112 L22: 0.2047 REMARK 3 L33: 0.1356 L12: -0.1176 REMARK 3 L13: -0.1207 L23: 0.1606 REMARK 3 S TENSOR REMARK 3 S11: 0.1410 S12: -0.0951 S13: 0.1745 REMARK 3 S21: -0.2030 S22: 0.0386 S23: 0.1660 REMARK 3 S31: -0.4235 S32: -0.3168 S33: 0.0007 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN C AND RESID 105:114) REMARK 3 ORIGIN FOR THE GROUP (A): -37.9870 27.3508 -21.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.6425 T22: 0.3699 REMARK 3 T33: 0.3502 T12: -0.0770 REMARK 3 T13: -0.0372 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.2684 L22: 0.0487 REMARK 3 L33: 0.0689 L12: 0.1163 REMARK 3 L13: 0.0725 L23: 0.0459 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.4148 S13: 0.2669 REMARK 3 S21: -1.2767 S22: 0.4231 S23: 0.0130 REMARK 3 S31: -0.4108 S32: 0.2919 S33: 0.0076 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38918 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULFATE, 0.1 M TRIS-HCL REMARK 280 PH 7.5, 3% ISOPROPANOL, 2% DMSO, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.20800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.41600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.41600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.20800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 NZ REMARK 470 SER A 53 OG REMARK 470 LYS A 66 NZ REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 24 CD OE1 NE2 REMARK 470 GLN B 28 CG CD OE1 NE2 REMARK 470 GLN B 35 CG CD OE1 NE2 REMARK 470 LYS B 66 CE NZ REMARK 470 LYS B 77 CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 ARG B 88 CD NE CZ NH1 NH2 REMARK 470 ARG C 11 CD NE CZ NH1 NH2 REMARK 470 LYS C 32 NZ REMARK 470 LYS C 66 CE NZ REMARK 470 LYS C 77 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 108 132.04 -170.53 REMARK 500 PHE C 113 4.22 -66.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C9Y B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C9Y B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B1C RELATED DB: PDB REMARK 900 RELATED ID: 6B1K RELATED DB: PDB DBREF 6B2C A 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 6B2C B 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 6B2C C 1 114 UNP P14174 MIF_HUMAN 2 115 SEQRES 1 A 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 A 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 A 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 A 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 A 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 A 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 A 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 A 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 A 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 B 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 B 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 B 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 B 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 B 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 B 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 B 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 B 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 B 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 C 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 C 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 C 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 C 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 C 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 C 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 C 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 C 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 C 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA HET SO4 A 201 5 HET C9Y B 201 26 HETNAM SO4 SULFATE ION HETNAM C9Y {2-[1-(3-FLUORO-4-HYDROXYPHENYL)-1H-1,2,3-TRIAZOL-4- HETNAM 2 C9Y YL]-8-OXO-1,7-NAPHTHYRIDIN-7(8H)-YL}ACETIC ACID FORMUL 4 SO4 O4 S 2- FORMUL 5 C9Y C18 H12 F N5 O4 FORMUL 6 HOH *143(H2 O) HELIX 1 AA1 PRO A 10 VAL A 14 5 5 HELIX 2 AA2 GLY A 17 GLY A 31 1 15 HELIX 3 AA3 PRO A 33 TYR A 36 5 4 HELIX 4 AA4 GLY A 68 ARG A 88 1 21 HELIX 5 AA5 SER A 90 ASP A 92 5 3 HELIX 6 AA6 ASN A 102 ALA A 104 5 3 HELIX 7 AA7 PRO B 10 VAL B 14 5 5 HELIX 8 AA8 GLY B 17 GLY B 31 1 15 HELIX 9 AA9 PRO B 33 TYR B 36 5 4 HELIX 10 AB1 GLY B 68 ARG B 88 1 21 HELIX 11 AB2 SER B 90 ASP B 92 5 3 HELIX 12 AB3 ASN B 102 ALA B 104 5 3 HELIX 13 AB4 PRO C 10 VAL C 14 5 5 HELIX 14 AB5 GLY C 17 GLY C 31 1 15 HELIX 15 AB6 PRO C 33 TYR C 36 5 4 HELIX 16 AB7 GLY C 68 ARG C 88 1 21 HELIX 17 AB8 SER C 90 ASP C 92 5 3 HELIX 18 AB9 ASN C 102 ALA C 104 5 3 SHEET 1 AA1 7 SER B 111 THR B 112 0 SHEET 2 AA1 7 VAL B 106 TRP B 108 -1 N TRP B 108 O SER B 111 SHEET 3 AA1 7 VAL A 94 ASP A 100 -1 N ILE A 96 O GLY B 107 SHEET 4 AA1 7 ALA A 57 SER A 63 1 N LEU A 61 O TYR A 99 SHEET 5 AA1 7 MET A 2 THR A 7 -1 N ASN A 6 O LEU A 58 SHEET 6 AA1 7 ALA A 38 VAL A 42 1 O VAL A 42 N VAL A 5 SHEET 7 AA1 7 LEU C 46 PHE C 49 -1 O ALA C 48 N VAL A 39 SHEET 1 AA2 7 LEU A 46 PHE A 49 0 SHEET 2 AA2 7 ALA B 38 VAL B 42 -1 O VAL B 39 N ALA A 48 SHEET 3 AA2 7 MET B 2 THR B 7 1 N VAL B 5 O VAL B 42 SHEET 4 AA2 7 ALA B 57 SER B 63 -1 O HIS B 62 N MET B 2 SHEET 5 AA2 7 VAL B 94 ASP B 100 1 O TYR B 95 N CYS B 59 SHEET 6 AA2 7 VAL C 106 TRP C 108 -1 O GLY C 107 N ILE B 96 SHEET 7 AA2 7 SER C 111 THR C 112 -1 O SER C 111 N TRP C 108 SHEET 1 AA3 7 SER A 111 THR A 112 0 SHEET 2 AA3 7 VAL A 106 TRP A 108 -1 N TRP A 108 O SER A 111 SHEET 3 AA3 7 VAL C 94 ASP C 100 -1 O ILE C 96 N GLY A 107 SHEET 4 AA3 7 ALA C 57 SER C 63 1 N CYS C 59 O ASN C 97 SHEET 5 AA3 7 MET C 2 THR C 7 -1 N ASN C 6 O LEU C 58 SHEET 6 AA3 7 ALA C 38 VAL C 42 1 O VAL C 42 N VAL C 5 SHEET 7 AA3 7 LEU B 46 PHE B 49 -1 N ALA B 48 O VAL C 39 SITE 1 AC1 4 GLY A 68 GLY A 69 ALA A 70 GLN A 71 SITE 1 AC2 11 TYR A 95 ASN A 97 PRO B 1 MET B 2 SITE 2 AC2 11 LYS B 32 TYR B 36 HIS B 62 SER B 63 SITE 3 AC2 11 ILE B 64 MET B 101 VAL B 106 CRYST1 97.425 97.425 105.624 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010264 0.005926 0.000000 0.00000 SCALE2 0.000000 0.011852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009468 0.00000