HEADER VIRAL PROTEIN 20-SEP-17 6B2I TITLE E45A MUTANT OF THE HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 133-363; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HIV-1 CAPSID PROTEIN, HEXAMER, E45A MUTANT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.GRES,K.A.KIRBY,S.G.SARAFIANOS REVDAT 5 04-OCT-23 6B2I 1 JRNL REVDAT 4 17-AUG-22 6B2I 1 COMPND SOURCE REMARK SITE REVDAT 4 2 1 ATOM REVDAT 3 11-DEC-19 6B2I 1 REMARK REVDAT 2 20-FEB-19 6B2I 1 REMARK REVDAT 1 26-SEP-18 6B2I 0 JRNL AUTH A.T.GRES,K.A.KIRBY,W.M.MCFADDEN,H.DU,D.LIU,C.XU,A.J.BRYER, JRNL AUTH 2 J.R.PERILLA,J.SHI,C.AIKEN,X.FU,P.ZHANG,A.C.FRANCIS, JRNL AUTH 3 G.B.MELIKYAN,S.G.SARAFIANOS JRNL TITL MULTIDISCIPLINARY STUDIES WITH MUTATED HIV-1 CAPSID PROTEINS JRNL TITL 2 REVEAL STRUCTURAL MECHANISMS OF LATTICE STABILIZATION. JRNL REF NAT COMMUN V. 14 5614 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37699872 JRNL DOI 10.1038/S41467-023-41197-7 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 8626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6100 - 3.6048 1.00 2788 133 0.1701 0.1887 REMARK 3 2 3.6048 - 2.8616 1.00 2720 145 0.2298 0.3035 REMARK 3 3 2.8616 - 2.5000 0.99 2696 144 0.2965 0.4350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1765 REMARK 3 ANGLE : 0.443 2402 REMARK 3 CHIRALITY : 0.038 269 REMARK 3 PLANARITY : 0.004 313 REMARK 3 DIHEDRAL : 15.389 1086 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:15) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3144 -12.3606 21.6833 REMARK 3 T TENSOR REMARK 3 T11: 1.4130 T22: 0.8384 REMARK 3 T33: 0.7271 T12: 0.0859 REMARK 3 T13: 0.1253 T23: -0.1021 REMARK 3 L TENSOR REMARK 3 L11: 2.1661 L22: 3.1252 REMARK 3 L33: 2.4048 L12: -0.4189 REMARK 3 L13: 0.4576 L23: 2.1079 REMARK 3 S TENSOR REMARK 3 S11: -0.4208 S12: -1.2690 S13: 0.7316 REMARK 3 S21: 2.3513 S22: -0.5515 S23: 0.4137 REMARK 3 S31: 2.0010 S32: 0.0683 S33: 0.7070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 16:46) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6487 -16.7471 -0.3908 REMARK 3 T TENSOR REMARK 3 T11: 0.4326 T22: 0.5088 REMARK 3 T33: 0.4910 T12: -0.0172 REMARK 3 T13: 0.0322 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 5.0127 L22: 3.7663 REMARK 3 L33: 5.1745 L12: -2.3178 REMARK 3 L13: -3.2927 L23: 3.2574 REMARK 3 S TENSOR REMARK 3 S11: 0.3086 S12: 0.4305 S13: 0.2498 REMARK 3 S21: -0.3153 S22: -0.5727 S23: -0.0724 REMARK 3 S31: -0.4179 S32: -0.5168 S33: 0.2545 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 47:74) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1036 -26.6677 1.9939 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.4866 REMARK 3 T33: 0.3791 T12: -0.0472 REMARK 3 T13: -0.0192 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 0.7187 L22: 1.7524 REMARK 3 L33: 6.5635 L12: -1.2459 REMARK 3 L13: 1.4884 L23: -0.3946 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: 0.0464 S13: -0.1275 REMARK 3 S21: -0.0569 S22: -0.1846 S23: 0.4580 REMARK 3 S31: 0.0493 S32: -0.2588 S33: 0.0595 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 75:85) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6071 -40.8017 13.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.6772 T22: 0.4791 REMARK 3 T33: 0.5425 T12: 0.0203 REMARK 3 T13: 0.1456 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 5.1159 L22: 7.6972 REMARK 3 L33: 8.9406 L12: -1.0165 REMARK 3 L13: 5.3254 L23: -0.2747 REMARK 3 S TENSOR REMARK 3 S11: -0.7952 S12: -0.1121 S13: -0.5928 REMARK 3 S21: 0.6645 S22: -0.0303 S23: -0.0208 REMARK 3 S31: 1.8957 S32: 0.7160 S33: 0.6486 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 86:98) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4257 -35.3756 27.4743 REMARK 3 T TENSOR REMARK 3 T11: 1.1800 T22: 1.0626 REMARK 3 T33: 0.6195 T12: 0.0557 REMARK 3 T13: 0.2087 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 4.2826 L22: 1.8366 REMARK 3 L33: 8.7039 L12: -1.8209 REMARK 3 L13: -2.8242 L23: 3.3675 REMARK 3 S TENSOR REMARK 3 S11: -1.1746 S12: -0.1474 S13: -1.0100 REMARK 3 S21: 0.5709 S22: 0.3665 S23: 0.0471 REMARK 3 S31: 2.1267 S32: 0.0156 S33: 0.6915 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 99:127) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0973 -27.5797 19.6071 REMARK 3 T TENSOR REMARK 3 T11: 0.5824 T22: 0.6355 REMARK 3 T33: 0.3977 T12: -0.0668 REMARK 3 T13: 0.0357 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.8817 L22: 7.3472 REMARK 3 L33: 5.6210 L12: -0.3839 REMARK 3 L13: -1.0727 L23: 0.8155 REMARK 3 S TENSOR REMARK 3 S11: 0.3410 S12: -0.7132 S13: 0.1936 REMARK 3 S21: 1.2414 S22: -0.2050 S23: 0.2658 REMARK 3 S31: 0.4499 S32: 0.1626 S33: -0.1205 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 128:148) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0151 -30.4571 0.5209 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.4651 REMARK 3 T33: 0.4354 T12: 0.0133 REMARK 3 T13: -0.0103 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.9152 L22: 3.1572 REMARK 3 L33: 2.7574 L12: 0.1623 REMARK 3 L13: -2.8843 L23: 0.3387 REMARK 3 S TENSOR REMARK 3 S11: -0.2672 S12: 0.1367 S13: 0.0931 REMARK 3 S21: -0.1175 S22: 0.2481 S23: -0.3462 REMARK 3 S31: 0.0635 S32: 0.7112 S33: 0.0300 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 149:171) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5812 -25.8450 -16.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.4963 T22: 0.3877 REMARK 3 T33: 0.3864 T12: -0.0161 REMARK 3 T13: -0.0266 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 9.5709 L22: 9.0953 REMARK 3 L33: 3.1474 L12: 2.6121 REMARK 3 L13: -3.5035 L23: -2.7149 REMARK 3 S TENSOR REMARK 3 S11: -0.1736 S12: 0.2717 S13: -0.1873 REMARK 3 S21: -1.4355 S22: -0.1276 S23: 0.4507 REMARK 3 S31: 0.0113 S32: 0.2238 S33: 0.1894 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 172:206) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3995 -31.1492 -10.7296 REMARK 3 T TENSOR REMARK 3 T11: 0.4461 T22: 0.4181 REMARK 3 T33: 0.5699 T12: 0.0293 REMARK 3 T13: 0.0646 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 2.3834 L22: 5.9295 REMARK 3 L33: 4.6405 L12: 2.4653 REMARK 3 L13: -0.9637 L23: -2.6259 REMARK 3 S TENSOR REMARK 3 S11: -0.3740 S12: 0.0034 S13: -0.4669 REMARK 3 S21: -0.4532 S22: 0.0196 S23: -0.6141 REMARK 3 S31: 0.7391 S32: 0.4797 S33: 0.3479 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 207:221) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4123 -22.4043 -10.5879 REMARK 3 T TENSOR REMARK 3 T11: 0.5311 T22: 0.5639 REMARK 3 T33: 0.6750 T12: -0.0251 REMARK 3 T13: 0.0177 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 8.7415 L22: 7.1630 REMARK 3 L33: 9.9901 L12: 0.1715 REMARK 3 L13: -2.8924 L23: 3.9535 REMARK 3 S TENSOR REMARK 3 S11: -0.2304 S12: -0.0012 S13: 0.4352 REMARK 3 S21: -0.1787 S22: 0.1201 S23: 0.5200 REMARK 3 S31: -0.9635 S32: 0.9702 S33: 0.1679 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 37.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 4XFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NAI, SODIUM CACODYLATE, REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -795.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -115.99 54.21 REMARK 500 THR A 188 -76.67 -116.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFX RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN REMARK 900 RELATED ID: 6B2H RELATED DB: PDB REMARK 900 RELATED ID: 6B2J RELATED DB: PDB REMARK 900 RELATED ID: 6B2K RELATED DB: PDB REMARK 900 RELATED ID: 6B2G RELATED DB: PDB DBREF 6B2I A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 6B2I ALA A 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER ALA GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET CL A 314 1 HET CL A 315 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 2 IOD 3(I 1-) FORMUL 5 CL 12(CL 1-) FORMUL 17 HOH *62(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLU A 175 1 16 HELIX 10 AB1 SER A 178 THR A 188 1 11 HELIX 11 AB2 THR A 188 ASN A 193 1 6 HELIX 12 AB3 ASN A 195 LEU A 205 1 11 HELIX 13 AB4 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 GLN A 4 0 SHEET 2 AA1 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.04 CISPEP 1 ASN A 121 PRO A 122 0 2.14 CRYST1 87.608 87.608 56.474 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011414 0.006590 0.000000 0.00000 SCALE2 0.000000 0.013180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017707 0.00000