HEADER VIRAL PROTEIN 20-SEP-17 6B2J TITLE E45A MUTANT OF HIV-1 CAPSID PROTEIN (OTHER CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 133-363; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HIV-1 CAPSID PROTEIN, HEXAMER, E45A MUTANT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.GRES,K.A.KIRBY,S.G.SARAFIANOS REVDAT 4 04-OCT-23 6B2J 1 JRNL REVDAT 3 11-DEC-19 6B2J 1 REMARK REVDAT 2 20-FEB-19 6B2J 1 REMARK REVDAT 1 26-SEP-18 6B2J 0 JRNL AUTH A.T.GRES,K.A.KIRBY,W.M.MCFADDEN,H.DU,D.LIU,C.XU,A.J.BRYER, JRNL AUTH 2 J.R.PERILLA,J.SHI,C.AIKEN,X.FU,P.ZHANG,A.C.FRANCIS, JRNL AUTH 3 G.B.MELIKYAN,S.G.SARAFIANOS JRNL TITL MULTIDISCIPLINARY STUDIES WITH MUTATED HIV-1 CAPSID PROTEINS JRNL TITL 2 REVEAL STRUCTURAL MECHANISMS OF LATTICE STABILIZATION. JRNL REF NAT COMMUN V. 14 5614 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37699872 JRNL DOI 10.1038/S41467-023-41197-7 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 693 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 1.88000 REMARK 3 B12 (A**2) : -0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1775 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1716 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2419 ; 1.062 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3962 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 5.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;32.923 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 309 ;11.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.231 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2009 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 383 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ;51.767 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 12 ;53.232 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6086 -10.5536 15.3375 REMARK 3 T TENSOR REMARK 3 T11: 0.6106 T22: 0.6303 REMARK 3 T33: 0.5487 T12: -0.0008 REMARK 3 T13: 0.0046 T23: -0.1732 REMARK 3 L TENSOR REMARK 3 L11: 0.1125 L22: 0.2764 REMARK 3 L33: 6.3237 L12: -0.1488 REMARK 3 L13: 0.8127 L23: -1.2334 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.0301 S13: 0.0737 REMARK 3 S21: 0.0795 S22: -0.1490 S23: 0.0327 REMARK 3 S31: -0.3535 S32: 0.0320 S33: 0.2417 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7374 -12.5359 9.3643 REMARK 3 T TENSOR REMARK 3 T11: 0.9094 T22: 0.6662 REMARK 3 T33: 0.4177 T12: -0.0356 REMARK 3 T13: -0.0191 T23: -0.1102 REMARK 3 L TENSOR REMARK 3 L11: 3.8360 L22: 0.6315 REMARK 3 L33: 5.6409 L12: -0.7917 REMARK 3 L13: 1.9957 L23: -1.8437 REMARK 3 S TENSOR REMARK 3 S11: 0.6097 S12: -0.8771 S13: 0.0734 REMARK 3 S21: 0.2534 S22: -0.1284 S23: 0.0982 REMARK 3 S31: -0.5271 S32: 0.6933 S33: -0.4813 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3860 -13.2048 -8.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.1156 REMARK 3 T33: 0.2025 T12: -0.0079 REMARK 3 T13: -0.0224 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.0074 L22: 7.8157 REMARK 3 L33: 10.4842 L12: -2.1999 REMARK 3 L13: -1.8717 L23: 3.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.1202 S13: 0.1989 REMARK 3 S21: -0.2246 S22: -0.0648 S23: 0.0229 REMARK 3 S31: -0.2170 S32: -0.2021 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7633 -20.1238 -6.1902 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0876 REMARK 3 T33: 0.2246 T12: -0.0394 REMARK 3 T13: -0.0243 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 5.8971 L22: 6.2059 REMARK 3 L33: 3.5914 L12: -2.0872 REMARK 3 L13: -3.1094 L23: 1.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: 0.3235 S13: 0.1738 REMARK 3 S21: -0.1742 S22: -0.0866 S23: -0.3383 REMARK 3 S31: -0.2812 S32: 0.1398 S33: 0.2116 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0762 -26.3845 -4.8065 REMARK 3 T TENSOR REMARK 3 T11: 0.0378 T22: 0.0605 REMARK 3 T33: 0.1615 T12: -0.0047 REMARK 3 T13: 0.0616 T23: 0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.5191 L22: 4.5262 REMARK 3 L33: 4.7282 L12: -1.7699 REMARK 3 L13: 2.4368 L23: -0.6475 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: -0.0059 S13: 0.0589 REMARK 3 S21: 0.1146 S22: 0.0021 S23: 0.1583 REMARK 3 S31: -0.0141 S32: 0.1441 S33: 0.0326 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6716 -39.8781 8.2746 REMARK 3 T TENSOR REMARK 3 T11: 0.5290 T22: 0.1245 REMARK 3 T33: 0.2330 T12: 0.1596 REMARK 3 T13: 0.1101 T23: 0.1112 REMARK 3 L TENSOR REMARK 3 L11: 12.3007 L22: 6.1680 REMARK 3 L33: 10.5523 L12: 1.7504 REMARK 3 L13: 5.5944 L23: -5.6153 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.5179 S13: -0.6006 REMARK 3 S21: 0.2337 S22: -0.1486 S23: -0.2610 REMARK 3 S31: 0.4748 S32: 0.1087 S33: 0.1530 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5753 -33.0730 22.7719 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.3382 REMARK 3 T33: 0.2280 T12: 0.0291 REMARK 3 T13: 0.0148 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 13.1584 L22: 6.4194 REMARK 3 L33: 11.3078 L12: -2.4717 REMARK 3 L13: -3.4323 L23: 2.7006 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.1789 S13: -0.2020 REMARK 3 S21: 0.2777 S22: -0.2238 S23: -0.4278 REMARK 3 S31: 0.0582 S32: 0.2350 S33: 0.2663 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8374 -26.7581 12.9319 REMARK 3 T TENSOR REMARK 3 T11: 0.3682 T22: 0.2688 REMARK 3 T33: 0.1075 T12: 0.0992 REMARK 3 T13: 0.0461 T23: 0.0695 REMARK 3 L TENSOR REMARK 3 L11: 7.4120 L22: 6.7639 REMARK 3 L33: 6.9994 L12: -1.9709 REMARK 3 L13: -1.3218 L23: -0.1739 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -1.0540 S13: -0.0336 REMARK 3 S21: 0.9364 S22: 0.0542 S23: -0.0841 REMARK 3 S31: -0.3866 S32: -0.1649 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5406 -30.3715 -5.5195 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0885 REMARK 3 T33: 0.1850 T12: 0.0141 REMARK 3 T13: -0.0037 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.2109 L22: 2.1604 REMARK 3 L33: 11.3256 L12: -0.1873 REMARK 3 L13: -4.5916 L23: -0.1874 REMARK 3 S TENSOR REMARK 3 S11: -0.0804 S12: 0.0520 S13: -0.1360 REMARK 3 S21: -0.0039 S22: 0.0847 S23: -0.0104 REMARK 3 S31: 0.2949 S32: 0.3180 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5829 -27.3862 -24.2968 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1591 REMARK 3 T33: 0.0690 T12: 0.0706 REMARK 3 T13: -0.0381 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 9.9961 L22: 8.6938 REMARK 3 L33: 8.9576 L12: 2.5500 REMARK 3 L13: -5.0287 L23: -1.8387 REMARK 3 S TENSOR REMARK 3 S11: -0.2543 S12: 0.6196 S13: 0.0471 REMARK 3 S21: -0.6276 S22: 0.4041 S23: -0.1631 REMARK 3 S31: 0.3313 S32: -0.1990 S33: -0.1498 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4364 -26.0369 -16.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.0642 REMARK 3 T33: 0.1589 T12: 0.0427 REMARK 3 T13: -0.1182 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 9.4871 L22: 2.1152 REMARK 3 L33: 11.7547 L12: 2.5730 REMARK 3 L13: -8.5773 L23: 0.0309 REMARK 3 S TENSOR REMARK 3 S11: -0.2674 S12: 0.2076 S13: 0.1717 REMARK 3 S21: -0.0669 S22: 0.1981 S23: 0.2356 REMARK 3 S31: 0.3694 S32: 0.0544 S33: 0.0694 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4405 -35.4346 -7.5620 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.1910 REMARK 3 T33: 0.1565 T12: 0.0401 REMARK 3 T13: -0.0008 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 9.7920 L22: 6.1474 REMARK 3 L33: 1.3416 L12: -1.8230 REMARK 3 L13: -3.1475 L23: -0.7919 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: 0.2405 S13: -0.0009 REMARK 3 S21: 0.3130 S22: -0.0693 S23: 0.0271 REMARK 3 S31: -0.1084 S32: -0.0811 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5411 -31.4690 -20.4655 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.2596 REMARK 3 T33: 0.2063 T12: 0.0940 REMARK 3 T13: -0.0562 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 13.4455 L22: 4.0069 REMARK 3 L33: 5.9380 L12: -0.5870 REMARK 3 L13: -4.8080 L23: 1.0794 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.1140 S13: -0.5641 REMARK 3 S21: -0.0048 S22: 0.3393 S23: -0.1338 REMARK 3 S31: 0.2103 S32: 0.4200 S33: -0.3413 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5323 -29.1093 -15.3551 REMARK 3 T TENSOR REMARK 3 T11: 0.2697 T22: 0.3805 REMARK 3 T33: 0.2593 T12: 0.0597 REMARK 3 T13: -0.0789 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 12.2807 L22: 16.2097 REMARK 3 L33: 7.9029 L12: -11.2692 REMARK 3 L13: -9.6402 L23: 10.2485 REMARK 3 S TENSOR REMARK 3 S11: -0.5444 S12: 0.2295 S13: -0.3957 REMARK 3 S21: 0.3919 S22: 0.3050 S23: 0.1144 REMARK 3 S31: 0.4040 S32: -0.0619 S33: 0.2393 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7565 -20.3541 -17.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.2306 REMARK 3 T33: 0.2060 T12: 0.0338 REMARK 3 T13: -0.0083 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.1346 L22: 5.8193 REMARK 3 L33: 15.1666 L12: 0.1517 REMARK 3 L13: -1.8031 L23: 0.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.2062 S13: 0.1842 REMARK 3 S21: -0.2370 S22: 0.0966 S23: -0.1456 REMARK 3 S31: -0.2393 S32: 0.2587 S33: -0.0396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6B2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS 0.5.24 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.24 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 1.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NAI, MIB, GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -400.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -113.79 53.50 REMARK 500 GLN A 176 60.13 -107.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 498 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFX RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN REMARK 900 RELATED ID: 6B2I RELATED DB: PDB REMARK 900 E45A MUTANT OF THE HIV-1 CAPSID PROTEIN DBREF 6B2J A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 6B2J ALA A 45 UNP B6DRA0 GLU 177 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER ALA GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET IOD A 309 1 HET IOD A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET CL A 314 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 2 IOD 10(I 1-) FORMUL 12 CL 4(CL 1-) FORMUL 16 HOH *98(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 SER A 146 1 22 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLU A 175 1 16 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 GLN A 4 0 SHEET 2 AA1 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.04 CISPEP 1 ASN A 121 PRO A 122 0 -1.66 SITE 1 AC1 1 SER A 41 SITE 1 AC2 1 ARG A 18 SITE 1 AC3 3 MET A 144 ARG A 162 GLN A 219 SITE 1 AC4 2 ARG A 18 HOH A 459 SITE 1 AC5 2 ARG A 167 HOH A 482 SITE 1 AC6 1 ARG A 162 SITE 1 AC7 2 GLY A 60 HIS A 62 SITE 1 AC8 3 ASN A 57 ARG A 173 HOH A 442 SITE 1 AC9 1 GLU A 98 SITE 1 AD1 2 ASN A 57 HOH A 449 CRYST1 92.493 92.493 57.748 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010812 0.006242 0.000000 0.00000 SCALE2 0.000000 0.012484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017317 0.00000