HEADER TRANSFERASE 20-SEP-17 6B2U TITLE CRYSTAL STRUCTURE OF XANTHOMONAS CAMPESTRIS OLEA H285N WITH CERULENIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACP] SYNTHASE III; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS (STRAIN SOURCE 3 ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25); SOURCE 4 ORGANISM_TAXID: 190485; SOURCE 5 STRAIN: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25; SOURCE 6 ATCC: 33913; SOURCE 7 GENE: FABH, XCC0212; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28B+ KEYWDS THIOLASE, TRANSFERASE, OLEA, CONDENSATION, CERULENIN EXPDTA X-RAY DIFFRACTION AUTHOR M.R.JENSEN,B.R.GOBLIRSCH,M.A.ESLER,J.K.CHRISTENSON,F.A.MOHAMED, AUTHOR 2 L.P.WACKETT,C.M.WILMOT REVDAT 3 04-OCT-23 6B2U 1 REMARK REVDAT 2 01-JAN-20 6B2U 1 REMARK REVDAT 1 28-FEB-18 6B2U 0 JRNL AUTH M.R.JENSEN,B.R.GOBLIRSCH,M.A.ESLER,J.K.CHRISTENSON, JRNL AUTH 2 F.A.MOHAMED,L.P.WACKETT,C.M.WILMOT JRNL TITL THE ROLE OF OLEA HIS285 IN SUBSTRATE COORDINATION OF JRNL TITL 2 LONG-CHAIN ACYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 19822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.390 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2588 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2484 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3507 ; 1.288 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5742 ; 0.673 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 7.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;38.505 ;24.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;18.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2895 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 501 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 358 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2706 -0.8020 -3.6350 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.0593 REMARK 3 T33: 0.0182 T12: -0.0661 REMARK 3 T13: -0.0375 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.5029 L22: 1.1088 REMARK 3 L33: 0.3764 L12: 0.2679 REMARK 3 L13: -0.0455 L23: -0.6206 REMARK 3 S TENSOR REMARK 3 S11: -0.1433 S12: 0.0670 S13: 0.0346 REMARK 3 S21: -0.2511 S22: 0.2017 S23: 0.1026 REMARK 3 S31: 0.1213 S32: -0.0992 S33: -0.0585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6B2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03322 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 29.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.77300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.0 REMARK 200 STARTING MODEL: 3S21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, 105 MM MANGANESE REMARK 280 CHLORIDE, 100 MM MES PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.52867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.26433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.26433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.52867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.26433 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 237 REMARK 465 LEU A 238 REMARK 465 CYS A 239 REMARK 465 ARG A 240 REMARK 465 GLY A 241 REMARK 465 ASN A 242 REMARK 465 LEU A 243 REMARK 465 ASP A 244 REMARK 465 ARG A 245 REMARK 465 MET A 246 REMARK 465 VAL A 247 REMARK 465 THR A 248 REMARK 465 ASP A 249 REMARK 465 THR A 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 38 O HOH A 501 1.97 REMARK 500 OD1 ASP A 151 OH TYR A 224 2.02 REMARK 500 OD2 ASP A 151 NH2 ARG A 155 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 188 OD1 ASP A 188 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 50.89 -160.33 REMARK 500 ALA A 142 -130.19 51.96 REMARK 500 ALA A 142 -133.91 51.96 REMARK 500 MET A 184 31.22 -82.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 274 ALA A 275 149.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CER A 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 ND1 REMARK 620 2 ASP A 76 OD1 78.9 REMARK 620 3 HOH A 501 O 50.5 65.0 REMARK 620 4 HOH A 506 O 115.0 101.8 160.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CER A 402 DBREF 6B2U A 21 358 UNP Q8PDX2 Q8PDX2_XANCP 1 338 SEQADV 6B2U MET A 1 UNP Q8PDX2 INITIATING METHIONINE SEQADV 6B2U GLY A 2 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U SER A 3 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U SER A 4 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 5 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 6 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 7 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 8 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 9 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 10 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U SER A 11 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U SER A 12 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U GLY A 13 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U LEU A 14 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U VAL A 15 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U PRO A 16 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U ARG A 17 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U GLY A 18 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U SER A 19 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U HIS A 20 UNP Q8PDX2 EXPRESSION TAG SEQADV 6B2U ASN A 285 UNP Q8PDX2 HIS 265 ENGINEERED MUTATION SEQRES 1 A 358 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 358 LEU VAL PRO ARG GLY SER HIS MET LEU PHE GLN ASN VAL SEQRES 3 A 358 SER ILE ALA GLY LEU ALA HIS ILE ASP ALA PRO HIS THR SEQRES 4 A 358 LEU THR SER LYS GLU ILE ASN GLU ARG LEU GLN PRO THR SEQRES 5 A 358 TYR ASP ARG LEU GLY ILE LYS THR ASP VAL LEU GLY ASP SEQRES 6 A 358 VAL ALA GLY ILE HIS ALA ARG ARG LEU TRP ASP GLN ASP SEQRES 7 A 358 VAL GLN ALA SER ASP ALA ALA THR GLN ALA ALA ARG LYS SEQRES 8 A 358 ALA LEU ILE ASP ALA ASN ILE GLY ILE GLU LYS ILE GLY SEQRES 9 A 358 LEU LEU ILE ASN THR SER VAL SER ARG ASP TYR LEU GLU SEQRES 10 A 358 PRO SER THR ALA SER ILE VAL SER GLY ASN LEU GLY VAL SEQRES 11 A 358 SER ASP HIS CYS MET THR PHE ASP VAL ALA ASN ALA CYS SEQRES 12 A 358 LEU ALA PHE ILE ASN GLY MET ASP ILE ALA ALA ARG MET SEQRES 13 A 358 LEU GLU ARG GLY GLU ILE ASP TYR ALA LEU VAL VAL ASP SEQRES 14 A 358 GLY GLU THR ALA ASN LEU VAL TYR GLU LYS THR LEU GLU SEQRES 15 A 358 ARG MET THR SER PRO ASP VAL THR GLU GLU GLU PHE ARG SEQRES 16 A 358 ASN GLU LEU ALA ALA LEU THR LEU GLY CYS GLY ALA ALA SEQRES 17 A 358 ALA MET VAL MET ALA ARG SER GLU LEU VAL PRO ASP ALA SEQRES 18 A 358 PRO ARG TYR LYS GLY GLY VAL THR ARG SER ALA THR GLU SEQRES 19 A 358 TRP ASN LYS LEU CYS ARG GLY ASN LEU ASP ARG MET VAL SEQRES 20 A 358 THR ASP THR ARG LEU LEU LEU ILE GLU GLY ILE LYS LEU SEQRES 21 A 358 ALA GLN LYS THR PHE VAL ALA ALA LYS GLN VAL LEU GLY SEQRES 22 A 358 TRP ALA VAL GLU GLU LEU ASP GLN PHE VAL ILE ASN GLN SEQRES 23 A 358 VAL SER ARG PRO HIS THR ALA ALA PHE VAL LYS SER PHE SEQRES 24 A 358 GLY ILE ASP PRO ALA LYS VAL MET THR ILE PHE GLY GLU SEQRES 25 A 358 HIS GLY ASN ILE GLY PRO ALA SER VAL PRO ILE VAL LEU SEQRES 26 A 358 SER LYS LEU LYS GLU LEU GLY ARG LEU LYS LYS GLY ASP SEQRES 27 A 358 ARG ILE ALA LEU LEU GLY ILE GLY SER GLY LEU ASN CYS SEQRES 28 A 358 SER MET ALA GLU VAL VAL TRP HET MN A 401 1 HET CER A 402 16 HETNAM MN MANGANESE (II) ION HETNAM CER (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS- HETNAM 2 CER DODECADIENAMIDE HETSYN CER CERULENIN FORMUL 2 MN MN 2+ FORMUL 3 CER C12 H19 N O3 FORMUL 4 HOH *27(H2 O) HELIX 1 AA1 ARG A 17 LEU A 22 5 6 HELIX 2 AA2 SER A 42 GLY A 57 1 16 HELIX 3 AA3 GLN A 80 ASN A 97 1 18 HELIX 4 AA4 GLY A 99 ILE A 103 5 5 HELIX 5 AA5 SER A 119 GLY A 129 1 11 HELIX 6 AA6 ASN A 141 CYS A 143 5 3 HELIX 7 AA7 LEU A 144 ARG A 159 1 16 HELIX 8 AA8 ALA A 173 MET A 184 1 12 HELIX 9 AA9 THR A 190 ALA A 199 1 10 HELIX 10 AB1 ALA A 200 LEU A 203 5 4 HELIX 11 AB2 GLU A 216 VAL A 218 5 3 HELIX 12 AB3 THR A 233 ASN A 236 5 4 HELIX 13 AB4 LEU A 252 GLY A 273 1 22 HELIX 14 AB5 ALA A 275 LEU A 279 5 5 HELIX 15 AB6 SER A 288 GLY A 300 1 13 HELIX 16 AB7 ASP A 302 VAL A 306 5 5 HELIX 17 AB8 ILE A 309 GLY A 314 1 6 HELIX 18 AB9 ILE A 316 PRO A 318 5 3 HELIX 19 AC1 ALA A 319 LEU A 331 1 13 SHEET 1 AA1 5 VAL A 26 ASP A 35 0 SHEET 2 AA1 5 GLY A 206 ARG A 214 -1 O ALA A 213 N SER A 27 SHEET 3 AA1 5 TYR A 164 GLU A 171 -1 N GLU A 171 O GLY A 206 SHEET 4 AA1 5 LEU A 105 ASN A 108 1 N LEU A 105 O LEU A 166 SHEET 5 AA1 5 MET A 135 ASP A 138 1 O MET A 135 N LEU A 106 SHEET 1 AA2 2 HIS A 38 THR A 41 0 SHEET 2 AA2 2 ALA A 71 LEU A 74 -1 O LEU A 74 N HIS A 38 SHEET 1 AA3 4 ARG A 223 SER A 231 0 SHEET 2 AA3 4 ASN A 350 VAL A 357 -1 O VAL A 357 N ARG A 223 SHEET 3 AA3 4 ARG A 339 GLY A 346 -1 N LEU A 342 O ALA A 354 SHEET 4 AA3 4 GLN A 281 ILE A 284 1 N VAL A 283 O ALA A 341 LINK ND1 HIS A 38 MN MN A 401 1555 1555 2.51 LINK OD1 ASP A 76 MN MN A 401 1555 1555 2.43 LINK MN MN A 401 O HOH A 501 1555 1555 1.99 LINK MN MN A 401 O HOH A 506 1555 1555 2.25 CISPEP 1 GLU A 117 PRO A 118 0 2.89 CISPEP 2 GLY A 348 LEU A 349 0 -13.35 SITE 1 AC1 4 HIS A 38 ASP A 76 HOH A 501 HOH A 506 SITE 1 AC2 7 GLU A 117 ALA A 142 CYS A 143 VAL A 287 SITE 2 AC2 7 ASN A 315 GLY A 346 SER A 347 CRYST1 90.516 90.516 69.793 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011048 0.006378 0.000000 0.00000 SCALE2 0.000000 0.012757 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014328 0.00000