HEADER IMMUNE SYSTEM 21-SEP-17 6B3D TITLE CRYSTAL STRUCTURE OF ANTI-HIV ANTIBODY PGT128 IN COMPLEX WITH A TITLE 2 BACTERIALLY DERIVED SYNTHETIC MIMETIC OF MAN9. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PGT128 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PGT128 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, GLYCAN, MANNOSE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.MURRELL,I.A.WILSON REVDAT 3 04-OCT-23 6B3D 1 HETSYN LINK REVDAT 2 29-JUL-20 6B3D 1 COMPND REMARK SEQRES HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 06-DEC-17 6B3D 0 JRNL AUTH R.PANTOPHLET,N.TRATTNIG,S.MURRELL,N.LU,D.CHAU,C.REMPEL, JRNL AUTH 2 I.A.WILSON,P.KOSMA JRNL TITL BACTERIALLY DERIVED SYNTHETIC MIMETICS OF MAMMALIAN JRNL TITL 2 OLIGOMANNOSE PRIME ANTIBODY RESPONSES THAT NEUTRALIZE HIV JRNL TITL 3 INFECTIVITY. JRNL REF NAT COMMUN V. 8 1601 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29150603 JRNL DOI 10.1038/S41467-017-01640-Y REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3311 - 4.7215 1.00 2864 168 0.1537 0.1795 REMARK 3 2 4.7215 - 3.7488 1.00 2742 146 0.1336 0.1578 REMARK 3 3 3.7488 - 3.2753 1.00 2742 153 0.1598 0.1993 REMARK 3 4 3.2753 - 2.9760 1.00 2735 142 0.1754 0.2067 REMARK 3 5 2.9760 - 2.7628 1.00 2706 121 0.1820 0.2340 REMARK 3 6 2.7628 - 2.5999 1.00 2733 139 0.1954 0.2470 REMARK 3 7 2.5999 - 2.4697 1.00 2688 145 0.1938 0.2608 REMARK 3 8 2.4697 - 2.3623 1.00 2692 133 0.1851 0.2313 REMARK 3 9 2.3623 - 2.2713 0.98 2627 130 0.1744 0.2142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3566 REMARK 3 ANGLE : 0.667 4880 REMARK 3 CHIRALITY : 0.044 571 REMARK 3 PLANARITY : 0.004 597 REMARK 3 DIHEDRAL : 14.549 2132 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 3 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6227 -2.1765 19.9805 REMARK 3 T TENSOR REMARK 3 T11: 0.2654 T22: 0.3263 REMARK 3 T33: 0.1980 T12: -0.0404 REMARK 3 T13: 0.0076 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.1398 L22: 0.6286 REMARK 3 L33: 1.6134 L12: -0.0341 REMARK 3 L13: 2.0029 L23: 0.1722 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.5478 S13: -0.1198 REMARK 3 S21: 0.1811 S22: -0.0410 S23: 0.1146 REMARK 3 S31: 0.2581 S32: -0.3841 S33: -0.0549 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 50 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8083 4.8314 22.4946 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.4105 REMARK 3 T33: 0.2264 T12: -0.0030 REMARK 3 T13: 0.0246 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 2.6839 L22: 1.1414 REMARK 3 L33: 2.5857 L12: 0.7289 REMARK 3 L13: 2.2395 L23: 0.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.1168 S12: -0.5772 S13: 0.1621 REMARK 3 S21: 0.0762 S22: -0.0748 S23: 0.1009 REMARK 3 S31: -0.1468 S32: -0.6817 S33: 0.1959 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5509 -0.7121 16.2239 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.2714 REMARK 3 T33: 0.1961 T12: -0.0504 REMARK 3 T13: -0.0070 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.3432 L22: 2.1010 REMARK 3 L33: 3.2452 L12: -0.8607 REMARK 3 L13: 1.9388 L23: -0.7185 REMARK 3 S TENSOR REMARK 3 S11: 0.1657 S12: -0.2641 S13: -0.1214 REMARK 3 S21: -0.0879 S22: 0.0518 S23: -0.0358 REMARK 3 S31: -0.0742 S32: -0.0485 S33: -0.1017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 93 THROUGH 106A) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4034 -5.5750 23.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.3493 T22: 0.4321 REMARK 3 T33: 0.1982 T12: -0.0917 REMARK 3 T13: -0.0515 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 1.0437 L22: 0.3576 REMARK 3 L33: 2.2734 L12: 0.0468 REMARK 3 L13: 1.4117 L23: -0.0289 REMARK 3 S TENSOR REMARK 3 S11: 0.3261 S12: -0.3694 S13: -0.2848 REMARK 3 S21: 0.1703 S22: -0.0643 S23: 0.0569 REMARK 3 S31: 0.1299 S32: 0.2238 S33: -0.2928 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 107 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8837 -27.8315 2.8759 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.2352 REMARK 3 T33: 0.2720 T12: 0.0354 REMARK 3 T13: -0.0257 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.1782 L22: 3.1855 REMARK 3 L33: 0.7521 L12: -1.2464 REMARK 3 L13: 0.5423 L23: 0.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: -0.0205 S13: -0.1208 REMARK 3 S21: -0.0622 S22: 0.0804 S23: -0.1763 REMARK 3 S31: 0.2068 S32: 0.1760 S33: -0.1558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 138 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5045 -20.7659 7.6886 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.2271 REMARK 3 T33: 0.2286 T12: -0.0172 REMARK 3 T13: -0.0144 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.8013 L22: 4.2556 REMARK 3 L33: 2.3995 L12: -2.7161 REMARK 3 L13: 1.2878 L23: -1.6767 REMARK 3 S TENSOR REMARK 3 S11: 0.1053 S12: -0.1861 S13: 0.0404 REMARK 3 S21: -0.0425 S22: -0.0430 S23: -0.1382 REMARK 3 S31: 0.2216 S32: 0.1287 S33: -0.0929 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4879 -20.3497 7.4476 REMARK 3 T TENSOR REMARK 3 T11: 0.2474 T22: 0.2425 REMARK 3 T33: 0.2838 T12: 0.0430 REMARK 3 T13: -0.0123 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.1814 L22: 2.6987 REMARK 3 L33: 2.0444 L12: -0.1088 REMARK 3 L13: -0.2968 L23: 0.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.1232 S13: 0.0241 REMARK 3 S21: 0.1188 S22: 0.0387 S23: -0.0824 REMARK 3 S31: 0.0277 S32: -0.0108 S33: -0.1538 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 174 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3030 -34.2508 11.0046 REMARK 3 T TENSOR REMARK 3 T11: 0.4613 T22: 0.2469 REMARK 3 T33: 0.4536 T12: 0.1013 REMARK 3 T13: -0.0598 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 1.9977 L22: 1.7140 REMARK 3 L33: 1.1555 L12: -1.0944 REMARK 3 L13: 0.4934 L23: 0.5165 REMARK 3 S TENSOR REMARK 3 S11: -0.1392 S12: -0.3669 S13: -0.5822 REMARK 3 S21: 0.1675 S22: 0.5054 S23: -0.1547 REMARK 3 S31: 0.5562 S32: 0.1196 S33: -0.1540 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 188 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4435 -32.0528 7.6958 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.2415 REMARK 3 T33: 0.4414 T12: -0.0239 REMARK 3 T13: 0.0102 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.3165 L22: 7.7296 REMARK 3 L33: 1.7932 L12: -2.9163 REMARK 3 L13: 1.0580 L23: -1.0310 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.0410 S13: -0.6789 REMARK 3 S21: 0.4341 S22: -0.1378 S23: 0.0823 REMARK 3 S31: 0.2524 S32: -0.0736 S33: -0.0211 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0693 -3.8416 21.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.3132 T22: 0.3211 REMARK 3 T33: 0.3565 T12: 0.0314 REMARK 3 T13: -0.1208 T23: -0.0777 REMARK 3 L TENSOR REMARK 3 L11: 2.1431 L22: 2.5043 REMARK 3 L33: 2.5275 L12: 0.1983 REMARK 3 L13: -0.3876 L23: 1.9023 REMARK 3 S TENSOR REMARK 3 S11: 0.3159 S12: 0.4019 S13: -0.3128 REMARK 3 S21: 0.0992 S22: -0.1651 S23: -0.4982 REMARK 3 S31: 0.2614 S32: 0.3163 S33: -0.1531 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9730 -0.0544 31.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.3120 T22: 0.2621 REMARK 3 T33: 0.2267 T12: -0.0318 REMARK 3 T13: -0.0960 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.6492 L22: 1.0166 REMARK 3 L33: 2.0980 L12: 0.5799 REMARK 3 L13: 1.1312 L23: -0.1755 REMARK 3 S TENSOR REMARK 3 S11: 0.2300 S12: -0.3285 S13: -0.1555 REMARK 3 S21: 0.3311 S22: -0.1308 S23: -0.1701 REMARK 3 S31: 0.1811 S32: -0.2365 S33: -0.0777 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 88 THROUGH 100I) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1620 4.1221 34.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: 0.4606 REMARK 3 T33: 0.2186 T12: -0.0253 REMARK 3 T13: -0.0458 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 2.4210 L22: 1.0721 REMARK 3 L33: 3.8760 L12: 0.3429 REMARK 3 L13: 0.3566 L23: 0.4133 REMARK 3 S TENSOR REMARK 3 S11: 0.1015 S12: -0.6503 S13: 0.1739 REMARK 3 S21: 0.3344 S22: -0.0776 S23: 0.0924 REMARK 3 S31: -0.0651 S32: -0.4361 S33: 0.0597 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 100J THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5293 -6.7245 17.6812 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.3047 REMARK 3 T33: 0.3188 T12: 0.0448 REMARK 3 T13: -0.1086 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.9145 L22: 3.5094 REMARK 3 L33: 1.8868 L12: -1.9256 REMARK 3 L13: -1.2218 L23: 2.1687 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: 0.0082 S13: -0.0035 REMARK 3 S21: 0.2748 S22: 0.1339 S23: -0.5148 REMARK 3 S31: 0.0895 S32: 0.0482 S33: -0.1716 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0984 -31.0070 -4.8272 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.4020 REMARK 3 T33: 0.3447 T12: -0.0146 REMARK 3 T13: -0.0538 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.1018 L22: 2.7988 REMARK 3 L33: 1.7891 L12: -1.5771 REMARK 3 L13: 0.6243 L23: -0.8915 REMARK 3 S TENSOR REMARK 3 S11: 0.1933 S12: 0.0396 S13: -0.5092 REMARK 3 S21: -0.2644 S22: 0.1666 S23: 0.0684 REMARK 3 S31: 0.1076 S32: -0.4842 S33: -0.2225 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 135 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5338 -21.0174 -1.5695 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1898 REMARK 3 T33: 0.3492 T12: 0.0285 REMARK 3 T13: -0.0208 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.6975 L22: 1.7955 REMARK 3 L33: 2.4565 L12: -0.0398 REMARK 3 L13: 1.0237 L23: 0.3024 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.1150 S13: 0.0471 REMARK 3 S21: 0.2173 S22: 0.1944 S23: -0.4711 REMARK 3 S31: -0.0354 S32: -0.0093 S33: -0.1040 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 158 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6838 -21.0386 -0.9960 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.2123 REMARK 3 T33: 0.2861 T12: 0.0003 REMARK 3 T13: -0.0103 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.6434 L22: 2.2131 REMARK 3 L33: 1.5413 L12: -0.2447 REMARK 3 L13: 0.3196 L23: 0.7222 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.1954 S13: 0.0762 REMARK 3 S21: 0.1471 S22: 0.1297 S23: -0.3051 REMARK 3 S31: 0.1622 S32: -0.2635 S33: -0.1644 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 189 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0752 -25.6569 -7.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2240 REMARK 3 T33: 0.3927 T12: -0.0021 REMARK 3 T13: 0.0441 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 3.4149 L22: 2.2028 REMARK 3 L33: 3.3392 L12: 0.0823 REMARK 3 L13: 1.8477 L23: 1.3040 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.2363 S13: -0.2036 REMARK 3 S21: -0.0214 S22: 0.2043 S23: -0.5001 REMARK 3 S31: 0.0970 S32: 0.2341 S33: -0.1773 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TV3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M HEPES PH 7.5, 8.5% REMARK 280 ISOPROPANOL, 10% ETHYLENE GLYCOL, 15% GLYCEROL, AND 17% PEG 4000, REMARK 280 PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.65300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.65300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.06850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.60200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.06850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.60200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.65300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.06850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.60200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.65300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.06850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.60200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 51 -49.82 70.25 REMARK 500 ASN L 52 19.42 -144.12 REMARK 500 TRP L 95 26.89 -155.96 REMARK 500 ASP L 151 -110.46 53.92 REMARK 500 GLU L 198 -122.22 57.68 REMARK 500 SER H 15 -3.79 72.71 REMARK 500 ASP H 100D -56.07 73.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 6B3D L 1 212 PDB 6B3D 6B3D 1 212 DBREF 6B3D H 1 217 PDB 6B3D 6B3D 1 217 SEQRES 1 L 211 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 L 211 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 211 ASN ASN PHE VAL SER TRP TYR GLN GLN HIS ALA GLY LYS SEQRES 4 L 211 ALA PRO LYS LEU VAL ILE TYR ASP VAL ASN LYS ARG PRO SEQRES 5 L 211 SER GLY VAL PRO ASP ARG PHE SER GLY SER LYS SER GLY SEQRES 6 L 211 ASN THR ALA SER LEU THR VAL SER GLY LEU GLN THR ASP SEQRES 7 L 211 ASP GLU ALA VAL TYR TYR CYS GLY SER LEU VAL GLY ASN SEQRES 8 L 211 TRP ASP VAL ILE PHE GLY GLY GLY THR LYS LEU THR VAL SEQRES 9 L 211 LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR LEU PHE SEQRES 10 L 211 PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS ALA THR SEQRES 11 L 211 LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY ALA VAL SEQRES 12 L 211 THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL LYS ALA SEQRES 13 L 211 GLY VAL GLU THR THR THR PRO SER LYS GLN SER ASN ASN SEQRES 14 L 211 LYS TYR ALA ALA SER SER TYR LEU SER LEU THR PRO GLU SEQRES 15 L 211 GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN VAL THR SEQRES 16 L 211 HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA PRO THR SEQRES 17 L 211 GLU CYS SER SEQRES 1 H 239 PCA PRO GLN LEU GLN GLU SER GLY PRO THR LEU VAL GLU SEQRES 2 H 239 ALA SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 239 ASP SER THR ALA ALA CYS ASN SER PHE TRP GLY TRP VAL SEQRES 4 H 239 ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP VAL GLY SER SEQRES 5 H 239 LEU SER HIS CYS ALA SER TYR TRP ASN ARG GLY TRP THR SEQRES 6 H 239 TYR HIS ASN PRO SER LEU LYS SER ARG LEU THR LEU ALA SEQRES 7 H 239 LEU ASP THR PRO LYS ASN LEU VAL PHE LEU LYS LEU ASN SEQRES 8 H 239 SER VAL THR ALA ALA ASP THR ALA THR TYR TYR CYS ALA SEQRES 9 H 239 ARG PHE GLY GLY GLU VAL LEU ARG TYR THR ASP TRP PRO SEQRES 10 H 239 LYS PRO ALA TRP VAL ASP LEU TRP GLY ARG GLY THR LEU SEQRES 11 H 239 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 12 H 239 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 13 H 239 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 14 H 239 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 15 H 239 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 16 H 239 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 17 H 239 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 18 H 239 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 19 H 239 PRO LYS SER CYS ASP HET PCA H 1 8 HET MAN A 1 12 HET MAN A 2 11 HET MAN A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET MAN A 6 11 HET MAN A 7 11 HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HET EDO L 304 4 HET EDO L 305 4 HET EDO L 306 4 HET EDO L 307 4 HET IPA L 308 4 HET EPE H 308 15 HET EDO H 309 4 HET EDO H 310 4 HET IPA H 311 4 HET IPA H 312 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM IPA ISOPROPYL ALCOHOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN IPA 2-PROPANOL HETSYN EPE HEPES FORMUL 2 PCA C5 H7 N O3 FORMUL 3 MAN 7(C6 H12 O6) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 EDO 6(C2 H6 O2) FORMUL 11 IPA 3(C3 H8 O) FORMUL 12 EPE C8 H18 N2 O4 S FORMUL 17 HOH *152(H2 O) HELIX 1 AA1 GLN L 79 GLU L 83 5 5 HELIX 2 AA2 SER L 121 ALA L 127 1 7 HELIX 3 AA3 THR L 181 HIS L 188 1 8 HELIX 4 AA4 LEU H 63 SER H 65 5 3 HELIX 5 AA5 THR H 73 LYS H 75 5 3 HELIX 6 AA6 THR H 83 THR H 87 5 5 HELIX 7 AA7 SER H 156 ALA H 158 5 3 HELIX 8 AA8 SER H 187 LEU H 189 5 3 HELIX 9 AA9 LYS H 201 ASN H 204 5 4 SHEET 1 AA1 5 SER L 9 GLY L 13 0 SHEET 2 AA1 5 THR L 102 VAL L 106 1 O THR L 105 N ALA L 11 SHEET 3 AA1 5 ALA L 84 VAL L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA1 5 VAL L 33 GLN L 38 -1 N SER L 34 O GLY L 89 SHEET 5 AA1 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 AA2 4 SER L 9 GLY L 13 0 SHEET 2 AA2 4 THR L 102 VAL L 106 1 O THR L 105 N ALA L 11 SHEET 3 AA2 4 ALA L 84 VAL L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA2 4 ASP L 95A PHE L 98 -1 O ASP L 95A N VAL L 92 SHEET 1 AA3 3 ILE L 19 THR L 24 0 SHEET 2 AA3 3 THR L 70 VAL L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 AA3 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA4 4 TYR L 172 LEU L 180 -1 O ALA L 174 N ILE L 136 SHEET 4 AA4 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AA5 4 SER L 114 PHE L 118 0 SHEET 2 AA5 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA5 4 TYR L 172 LEU L 180 -1 O ALA L 174 N ILE L 136 SHEET 4 AA5 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AA6 4 SER L 153 VAL L 155 0 SHEET 2 AA6 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AA6 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AA6 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA7 4 LEU H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA7 4 LEU H 67 ASP H 72 -1 N ALA H 70 O PHE H 79 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA8 6 ALA H 88 GLU H 98 -1 N ALA H 88 O VAL H 109 SHEET 4 AA8 6 PHE H 35 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA8 6 GLU H 46 SER H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA8 6 TRP H 56 HIS H 59 -1 O TYR H 58 N SER H 50 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA9 4 ALA H 88 GLU H 98 -1 N ALA H 88 O VAL H 109 SHEET 4 AA9 4 LYS H 100G TRP H 103 -1 O TRP H 100J N GLY H 96 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB1 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AB1 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB2 4 SER H 120 LEU H 124 0 SHEET 2 AB2 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB2 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AB2 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB3 3 THR H 151 TRP H 154 0 SHEET 2 AB3 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB3 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 193 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 4 CYS H 32 CYS H 52B 1555 1555 2.04 SSBOND 5 CYS H 140 CYS H 196 1555 1555 2.03 LINK C PCA H 1 N PRO H 2 1555 1555 1.34 LINK O3 MAN A 1 C1 MAN A 2 1555 1555 1.44 LINK O6 MAN A 1 C1 MAN A 5 1555 1555 1.44 LINK O2 MAN A 2 C1 MAN A 3 1555 1555 1.45 LINK O2 MAN A 3 C1 MAN A 4 1555 1555 1.44 LINK O6 MAN A 5 C1 MAN A 6 1555 1555 1.44 LINK O2 MAN A 6 C1 MAN A 7 1555 1555 1.44 CISPEP 1 TYR L 140 PRO L 141 0 -2.04 CISPEP 2 PHE H 146 PRO H 147 0 -6.17 CISPEP 3 GLU H 148 PRO H 149 0 1.93 CRYST1 72.137 105.204 145.306 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006882 0.00000