HEADER PROTEIN BINDING 22-SEP-17 6B3N TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EFFECTOR NLEG5-1 TITLE 2 FROM ESCHERICHIA COLI O157:H7 STR. SAKAI COMPND MOL_ID: 1; COMPND 2 MOLECULE: NLEG5-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: ECS1996, Z2337; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS EFFECTOR PROTEIN, PATHOGENESIS, BINDING DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.VALLEAU,S.HOULISTON,A.LEMAK,W.F.ANDERSON,C.ARROWSMITH,A.SAVCHENKO, AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 14-JUN-23 6B3N 1 REMARK REVDAT 1 22-NOV-17 6B3N 0 JRNL AUTH D.VALLEAU,A.SAVCHENKO JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EFFECTOR JRNL TITL 2 NLEG5-1 FROM ESCHERICHIA COLI O157:H7 STR. SAKAI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 6B3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230224. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 400 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-100% 13C; U-100% 15N] REMARK 210 NLEG5-1, 15 MM HEPES, 250 MM REMARK 210 SODIUM CHLORIDE, 5 MM L-ARGININE, REMARK 210 5 MM SODIUM CITRATE, 1 MM REMARK 210 BENZAMIDINE, 10 UM DTT, 0.01 % W/ REMARK 210 V SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCO; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, CYANA, REMARK 210 ABACUS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 101 REMARK 465 MET A 102 REMARK 465 LEU A 103 REMARK 465 GLU A 104 REMARK 465 ASN A 105 REMARK 465 MET A 106 REMARK 465 ASP A 107 REMARK 465 LEU A 108 REMARK 465 LEU A 109 REMARK 465 SER A 110 REMARK 465 ASN A 111 REMARK 465 TYR A 112 REMARK 465 GLN A 113 REMARK 465 LEU A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 6 35.13 -141.06 REMARK 500 1 ASP A 18 117.43 -174.69 REMARK 500 1 VAL A 52 -43.86 -144.98 REMARK 500 1 ASN A 53 104.41 179.51 REMARK 500 2 THR A 6 55.00 -150.09 REMARK 500 2 PRO A 11 40.30 -81.18 REMARK 500 2 ASP A 18 105.60 -176.41 REMARK 500 2 ASN A 53 145.27 71.19 REMARK 500 2 ASP A 63 94.62 -66.81 REMARK 500 3 THR A 6 41.46 -147.05 REMARK 500 3 ASP A 18 119.47 179.41 REMARK 500 3 VAL A 52 46.43 -87.57 REMARK 500 3 ASN A 53 99.48 65.83 REMARK 500 3 LEU A 84 46.09 -105.14 REMARK 500 3 SER A 88 94.49 -60.54 REMARK 500 4 VAL A 3 94.84 -61.43 REMARK 500 4 THR A 6 38.95 -149.97 REMARK 500 4 ASN A 61 89.16 -67.65 REMARK 500 4 HIS A 86 19.08 -142.25 REMARK 500 5 ASP A 4 89.59 -68.40 REMARK 500 5 THR A 6 53.14 -154.83 REMARK 500 5 ALA A 36 96.33 -164.90 REMARK 500 5 MET A 50 141.06 68.33 REMARK 500 5 VAL A 52 76.63 67.48 REMARK 500 5 MET A 57 -174.38 -174.75 REMARK 500 5 ASN A 85 97.08 -68.29 REMARK 500 5 SER A 88 41.20 -163.47 REMARK 500 6 ASP A 4 99.31 -65.73 REMARK 500 6 THR A 6 60.30 -158.33 REMARK 500 6 MET A 50 -21.99 76.43 REMARK 500 6 GLN A 51 99.85 60.22 REMARK 500 6 VAL A 52 155.35 71.50 REMARK 500 6 ASN A 53 72.29 73.35 REMARK 500 6 MET A 57 112.95 -177.62 REMARK 500 6 SER A 88 -61.10 70.18 REMARK 500 7 THR A 6 40.65 -154.75 REMARK 500 7 MET A 57 107.24 -167.51 REMARK 500 7 LEU A 84 47.42 -95.95 REMARK 500 7 ASN A 85 107.95 -54.34 REMARK 500 8 THR A 6 71.00 -150.07 REMARK 500 8 ASP A 18 149.73 -171.91 REMARK 500 8 GLN A 51 -52.98 -176.67 REMARK 500 8 ASN A 53 143.61 73.54 REMARK 500 8 ASP A 63 19.05 59.86 REMARK 500 9 PRO A 2 91.79 -68.97 REMARK 500 9 THR A 6 47.40 -147.81 REMARK 500 9 PRO A 49 -145.03 -78.79 REMARK 500 9 MET A 50 162.05 80.73 REMARK 500 9 ASN A 61 92.90 -64.06 REMARK 500 9 ASN A 67 -79.05 37.55 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A 39 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30348 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EFFECTOR NLEG5-1 REMARK 900 FROM ESCHERICHIA COLI O157:H7 STR. SAKAI DBREF 6B3N A 1 116 UNP Q8X4X3 Q8X4X3_ECO57 1 116 SEQADV 6B3N MET A -20 UNP Q8X4X3 INITIATING METHIONINE SEQADV 6B3N GLY A -19 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N SER A -18 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N SER A -17 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N HIS A -16 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N HIS A -15 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N HIS A -14 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N HIS A -13 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N HIS A -12 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N HIS A -11 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N SER A -10 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N SER A -9 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N GLY A -8 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N ARG A -7 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N GLU A -6 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N ASN A -5 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N LEU A -4 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N TYR A -3 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N PHE A -2 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N GLN A -1 UNP Q8X4X3 EXPRESSION TAG SEQADV 6B3N GLY A 0 UNP Q8X4X3 EXPRESSION TAG SEQRES 1 A 137 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 137 ARG GLU ASN LEU TYR PHE GLN GLY MET PRO VAL ASP LEU SEQRES 3 A 137 THR PRO TYR ILE LEU PRO GLY VAL SER PHE LEU SER ASP SEQRES 4 A 137 ILE PRO GLN GLU THR LEU SER GLU ILE ARG ASN GLN THR SEQRES 5 A 137 ILE ARG GLY GLU ALA GLN ILE ARG LEU GLY GLU LEU MET SEQRES 6 A 137 VAL SER ILE ARG PRO MET GLN VAL ASN GLY TYR PHE MET SEQRES 7 A 137 GLY SER LEU ASN GLN ASP GLY LEU SER ASN ASP ASN ILE SEQRES 8 A 137 GLN ILE GLY LEU GLN TYR ILE GLU HIS ILE GLU ARG THR SEQRES 9 A 137 LEU ASN HIS GLY SER LEU THR SER ARG GLU VAL THR VAL SEQRES 10 A 137 LEU ARG GLU ILE GLU MET LEU GLU ASN MET ASP LEU LEU SEQRES 11 A 137 SER ASN TYR GLN LEU GLU GLU HELIX 1 AA1 PRO A 20 THR A 31 1 12 HELIX 2 AA2 ILE A 32 GLY A 34 5 3 HELIX 3 AA3 SER A 66 LEU A 84 1 19 HELIX 4 AA4 THR A 90 ILE A 100 1 11 SHEET 1 AA1 3 VAL A 3 ASP A 4 0 SHEET 2 AA1 3 ALA A 36 LEU A 40 1 N GLN A 37 O VAL A 3 SHEET 3 AA1 3 LEU A 43 ILE A 47 -1 O ILE A 47 N ALA A 36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1