HEADER TRANSPORT PROTEIN 25-SEP-17 6B3Y TITLE CRYSTAL STRUCTURE OF THE PH-LIKE DOMAIN FROM DENND3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENN DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DENND3, KIAA0870; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS AUTOPHAGY, GUANINE NUCLEOTIDE EXCHANGE FACTOR, PH-LIKE FOLD, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,J.XU,M.MENADE,M.BEAUGRAND,T.PAN,P.S.MCPHERSON,K.GEHRING REVDAT 3 13-MAR-24 6B3Y 1 REMARK REVDAT 2 03-OCT-18 6B3Y 1 JRNL REVDAT 1 24-JAN-18 6B3Y 0 JRNL AUTH J.XU,G.KOZLOV,P.S.MCPHERSON,K.GEHRING JRNL TITL A PH-LIKE DOMAIN OF THE RAB12 GUANINE NUCLEOTIDE EXCHANGE JRNL TITL 2 FACTOR DENND3 BINDS ACTIN AND IS REQUIRED FOR AUTOPHAGY. JRNL REF J. BIOL. CHEM. V. 293 4566 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29352104 JRNL DOI 10.1074/JBC.RA117.001446 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 46621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6200 - 4.7567 0.94 2742 137 0.1908 0.2407 REMARK 3 2 4.7567 - 3.7773 0.95 2638 99 0.1705 0.2077 REMARK 3 3 3.7773 - 3.3004 0.96 2564 155 0.1875 0.2415 REMARK 3 4 3.3004 - 2.9988 0.97 2635 133 0.2074 0.2441 REMARK 3 5 2.9988 - 2.7840 0.98 2619 124 0.2111 0.2696 REMARK 3 6 2.7840 - 2.6199 0.98 2569 166 0.2155 0.2606 REMARK 3 7 2.6199 - 2.4888 0.98 2588 147 0.2095 0.2749 REMARK 3 8 2.4888 - 2.3805 0.98 2618 132 0.2047 0.2717 REMARK 3 9 2.3805 - 2.2889 0.98 2588 142 0.1970 0.2562 REMARK 3 10 2.2889 - 2.2099 0.99 2589 136 0.1885 0.2038 REMARK 3 11 2.2099 - 2.1408 0.99 2603 157 0.1885 0.2287 REMARK 3 12 2.1408 - 2.0796 0.99 2591 137 0.1886 0.2230 REMARK 3 13 2.0796 - 2.0249 0.99 2611 137 0.1970 0.2340 REMARK 3 14 2.0249 - 1.9755 0.99 2601 134 0.1994 0.2528 REMARK 3 15 1.9755 - 1.9306 0.99 2606 131 0.2125 0.2569 REMARK 3 16 1.9306 - 1.8895 0.98 2554 149 0.2403 0.2697 REMARK 3 17 1.8895 - 1.8517 0.98 2565 124 0.2691 0.3318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3680 REMARK 3 ANGLE : 1.127 4962 REMARK 3 CHIRALITY : 0.072 566 REMARK 3 PLANARITY : 0.007 625 REMARK 3 DIHEDRAL : 5.559 2255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9768 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 37.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.24 M SODIUM MALONATE PH 7.0, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.72400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.00300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.00300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.36200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.00300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.00300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.08600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.00300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.00300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.36200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.00300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.00300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.08600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.72400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 715 REMARK 465 PRO A 716 REMARK 465 LEU A 717 REMARK 465 GLY A 718 REMARK 465 SER A 719 REMARK 465 VAL A 720 REMARK 465 LYS A 721 REMARK 465 LYS A 947 REMARK 465 SER A 948 REMARK 465 PRO A 949 REMARK 465 MET A 950 REMARK 465 ALA A 951 REMARK 465 VAL A 952 REMARK 465 PRO A 953 REMARK 465 LYS A 954 REMARK 465 THR A 955 REMARK 465 THR A 956 REMARK 465 SER A 957 REMARK 465 GLU A 958 REMARK 465 THR A 959 REMARK 465 LEU A 960 REMARK 465 LYS A 961 REMARK 465 HIS A 962 REMARK 465 LYS A 963 REMARK 465 ILE A 964 REMARK 465 ASN A 965 REMARK 465 PRO A 966 REMARK 465 SER A 967 REMARK 465 ALA A 968 REMARK 465 GLY A 969 REMARK 465 GLU A 970 REMARK 465 THR A 971 REMARK 465 ALA A 972 REMARK 465 PRO A 973 REMARK 465 GLY B 715 REMARK 465 PRO B 716 REMARK 465 LEU B 717 REMARK 465 GLY B 718 REMARK 465 SER B 719 REMARK 465 VAL B 720 REMARK 465 LYS B 721 REMARK 465 ASN B 722 REMARK 465 SER B 948 REMARK 465 PRO B 949 REMARK 465 MET B 950 REMARK 465 ALA B 951 REMARK 465 VAL B 952 REMARK 465 PRO B 953 REMARK 465 LYS B 954 REMARK 465 THR B 955 REMARK 465 THR B 956 REMARK 465 SER B 957 REMARK 465 GLU B 958 REMARK 465 THR B 959 REMARK 465 LEU B 960 REMARK 465 LYS B 961 REMARK 465 HIS B 962 REMARK 465 LYS B 963 REMARK 465 ILE B 964 REMARK 465 ASN B 965 REMARK 465 PRO B 966 REMARK 465 SER B 967 REMARK 465 ALA B 968 REMARK 465 GLY B 969 REMARK 465 GLU B 970 REMARK 465 THR B 971 REMARK 465 ALA B 972 REMARK 465 PRO B 973 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 723 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 763 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1052 O HOH B 1065 2.13 REMARK 500 O HOH A 1081 O HOH A 1107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1085 O HOH A 1120 7555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 738 CG - CD - NE ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 857 -121.32 48.66 REMARK 500 LYS A 880 -136.20 57.84 REMARK 500 ALA B 841 148.58 -173.18 REMARK 500 SER B 852 -166.49 -127.95 REMARK 500 LEU B 857 -121.83 49.92 REMARK 500 LYS B 880 -127.90 55.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1135 DISTANCE = 6.20 ANGSTROMS DBREF 6B3Y A 720 973 UNP A2RT67 DEND3_MOUSE 720 973 DBREF 6B3Y B 720 973 UNP A2RT67 DEND3_MOUSE 720 973 SEQADV 6B3Y GLY A 715 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y PRO A 716 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y LEU A 717 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y GLY A 718 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y SER A 719 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y GLY B 715 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y PRO B 716 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y LEU B 717 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y GLY B 718 UNP A2RT67 EXPRESSION TAG SEQADV 6B3Y SER B 719 UNP A2RT67 EXPRESSION TAG SEQRES 1 A 259 GLY PRO LEU GLY SER VAL LYS ASN PHE GLU LEU PRO LYS SEQRES 2 A 259 LYS HIS MET GLN LEU ASN ASP PHE VAL LYS ARG VAL GLN SEQRES 3 A 259 GLU SER GLY ILE VAL LYS ASP ALA VAL ILE ILE HIS ARG SEQRES 4 A 259 LEU PHE ASP ALA LEU THR PHE GLY HIS GLU LYS GLN ILE SEQRES 5 A 259 ASP PRO GLU THR PHE ARG ASP PHE TYR THR CYS TRP LYS SEQRES 6 A 259 GLU THR GLU ALA GLU ALA GLN GLU VAL SER LEU PRO ALA SEQRES 7 A 259 LEU LEU MET GLU HIS LEU ASP LYS ASN GLU CYS VAL TYR SEQRES 8 A 259 LYS LEU SER SER SER VAL LYS THR ASN ARG GLY VAL GLY SEQRES 9 A 259 LYS ILE ALA MET THR GLN LYS ARG LEU PHE LEU LEU THR SEQRES 10 A 259 GLU GLY ARG PRO GLY TYR VAL GLU ILE ALA THR PHE ARG SEQRES 11 A 259 ASN ILE GLU GLU VAL LYS ASN SER THR VAL ALA PHE LEU SEQRES 12 A 259 LEU LEU ARG ILE PRO THR LEU LYS ILE LYS THR VAL ALA SEQRES 13 A 259 LYS LYS GLU VAL PHE GLU ALA ASN LEU LYS SER GLU CYS SEQRES 14 A 259 ASP LEU TRP HIS LEU MET VAL LYS GLU MET TRP ALA GLY SEQRES 15 A 259 LYS GLN LEU ALA ASP ASP HIS LYS ASP PRO GLN TYR VAL SEQRES 16 A 259 GLN GLN ALA LEU THR ASN VAL LEU LEU MET ASP ALA VAL SEQRES 17 A 259 VAL GLY THR LEU GLN SER PRO SER ALA ILE HIS ALA ALA SEQRES 18 A 259 SER LYS LEU ALA TYR PHE ASP ASN MET LYS LYS LYS SER SEQRES 19 A 259 PRO MET ALA VAL PRO LYS THR THR SER GLU THR LEU LYS SEQRES 20 A 259 HIS LYS ILE ASN PRO SER ALA GLY GLU THR ALA PRO SEQRES 1 B 259 GLY PRO LEU GLY SER VAL LYS ASN PHE GLU LEU PRO LYS SEQRES 2 B 259 LYS HIS MET GLN LEU ASN ASP PHE VAL LYS ARG VAL GLN SEQRES 3 B 259 GLU SER GLY ILE VAL LYS ASP ALA VAL ILE ILE HIS ARG SEQRES 4 B 259 LEU PHE ASP ALA LEU THR PHE GLY HIS GLU LYS GLN ILE SEQRES 5 B 259 ASP PRO GLU THR PHE ARG ASP PHE TYR THR CYS TRP LYS SEQRES 6 B 259 GLU THR GLU ALA GLU ALA GLN GLU VAL SER LEU PRO ALA SEQRES 7 B 259 LEU LEU MET GLU HIS LEU ASP LYS ASN GLU CYS VAL TYR SEQRES 8 B 259 LYS LEU SER SER SER VAL LYS THR ASN ARG GLY VAL GLY SEQRES 9 B 259 LYS ILE ALA MET THR GLN LYS ARG LEU PHE LEU LEU THR SEQRES 10 B 259 GLU GLY ARG PRO GLY TYR VAL GLU ILE ALA THR PHE ARG SEQRES 11 B 259 ASN ILE GLU GLU VAL LYS ASN SER THR VAL ALA PHE LEU SEQRES 12 B 259 LEU LEU ARG ILE PRO THR LEU LYS ILE LYS THR VAL ALA SEQRES 13 B 259 LYS LYS GLU VAL PHE GLU ALA ASN LEU LYS SER GLU CYS SEQRES 14 B 259 ASP LEU TRP HIS LEU MET VAL LYS GLU MET TRP ALA GLY SEQRES 15 B 259 LYS GLN LEU ALA ASP ASP HIS LYS ASP PRO GLN TYR VAL SEQRES 16 B 259 GLN GLN ALA LEU THR ASN VAL LEU LEU MET ASP ALA VAL SEQRES 17 B 259 VAL GLY THR LEU GLN SER PRO SER ALA ILE HIS ALA ALA SEQRES 18 B 259 SER LYS LEU ALA TYR PHE ASP ASN MET LYS LYS LYS SER SEQRES 19 B 259 PRO MET ALA VAL PRO LYS THR THR SER GLU THR LEU LYS SEQRES 20 B 259 HIS LYS ILE ASN PRO SER ALA GLY GLU THR ALA PRO FORMUL 3 HOH *216(H2 O) HELIX 1 AA1 GLN A 731 GLY A 743 1 13 HELIX 2 AA2 ASP A 747 THR A 759 1 13 HELIX 3 AA3 ASP A 767 GLU A 787 1 21 HELIX 4 AA4 PRO A 791 HIS A 797 1 7 HELIX 5 AA5 LEU A 879 SER A 881 5 3 HELIX 6 AA6 GLU A 882 LYS A 904 1 23 HELIX 7 AA7 PRO A 906 GLN A 927 1 22 HELIX 8 AA8 SER A 930 SER A 936 1 7 HELIX 9 AA9 ALA A 939 LYS A 946 1 8 HELIX 10 AB1 GLN B 731 GLY B 743 1 13 HELIX 11 AB2 ASP B 747 THR B 759 1 13 HELIX 12 AB3 ASP B 767 VAL B 788 1 22 HELIX 13 AB4 PRO B 791 LEU B 798 1 8 HELIX 14 AB5 LEU B 879 SER B 881 5 3 HELIX 15 AB6 GLU B 882 LYS B 904 1 23 HELIX 16 AB7 PRO B 906 GLN B 927 1 22 HELIX 17 AB8 SER B 930 SER B 936 1 7 HELIX 18 AB9 ALA B 939 LYS B 946 1 8 SHEET 1 AA1 4 VAL A 804 THR A 813 0 SHEET 2 AA1 4 GLY A 816 THR A 823 -1 O MET A 822 N TYR A 805 SHEET 3 AA1 4 ARG A 826 THR A 831 -1 O ARG A 826 N THR A 823 SHEET 4 AA1 4 TYR A 837 THR A 842 -1 O VAL A 838 N LEU A 829 SHEET 1 AA2 3 ILE A 846 PHE A 856 0 SHEET 2 AA2 3 LEU A 859 THR A 868 -1 O LYS A 867 N GLU A 847 SHEET 3 AA2 3 PHE A 875 ALA A 877 -1 O PHE A 875 N ILE A 866 SHEET 1 AA3 3 VAL B 804 LEU B 807 0 SHEET 2 AA3 3 GLY B 816 THR B 823 -1 O MET B 822 N TYR B 805 SHEET 3 AA3 3 VAL B 811 THR B 813 -1 N VAL B 811 O GLY B 818 SHEET 1 AA4 4 VAL B 804 LEU B 807 0 SHEET 2 AA4 4 GLY B 816 THR B 823 -1 O MET B 822 N TYR B 805 SHEET 3 AA4 4 ARG B 826 LEU B 830 -1 O LEU B 830 N LYS B 819 SHEET 4 AA4 4 TYR B 837 THR B 842 -1 O ALA B 841 N LEU B 827 SHEET 1 AA5 3 ILE B 846 PHE B 856 0 SHEET 2 AA5 3 LEU B 859 THR B 868 -1 O THR B 863 N SER B 852 SHEET 3 AA5 3 PHE B 875 ALA B 877 -1 O PHE B 875 N ILE B 866 CISPEP 1 ARG A 834 PRO A 835 0 3.94 CISPEP 2 ARG B 834 PRO B 835 0 3.24 CRYST1 82.006 82.006 161.448 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006194 0.00000