HEADER IMMUNE SYSTEM 29-SEP-17 6B5N TITLE STRUCTURE OF PFCSP PEPTIDE 25 WITH HUMAN PROTECTIVE ANTIBODY CIS43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIS43 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CIS43 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PFCSP PEPTIDE 25: ASN-VAL-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL- COMPND 11 ASP; COMPND 12 CHAIN: A; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 14 ORGANISM_TAXID: 5833 KEYWDS MALARIA, PFCSP, VACCINE, ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.PANCERA,C.WEIDLE REVDAT 3 25-APR-18 6B5N 1 JRNL REVDAT 2 04-APR-18 6B5N 1 JRNL REVDAT 1 21-MAR-18 6B5N 0 JRNL AUTH N.K.KISALU,A.H.IDRIS,C.WEIDLE,Y.FLORES-GARCIA,B.J.FLYNN, JRNL AUTH 2 B.K.SACK,S.MURPHY,A.SCHON,E.FREIRE,J.R.FRANCICA,A.B.MILLER, JRNL AUTH 3 J.GREGORY,S.MARCH,H.X.LIAO,B.F.HAYNES,K.WIEHE,A.M.TRAMA, JRNL AUTH 4 K.O.SAUNDERS,M.A.GLADDEN,A.MONROE,M.BONSIGNORI,M.KANEKIYO, JRNL AUTH 5 A.K.WHEATLEY,A.B.MCDERMOTT,S.K.FARNEY,G.Y.CHUANG,B.ZHANG, JRNL AUTH 6 N.KC,S.CHAKRAVARTY,P.D.KWONG,P.SINNIS,S.N.BHATIA, JRNL AUTH 7 S.H.I.KAPPE,B.K.L.SIM,S.L.HOFFMAN,F.ZAVALA,M.PANCERA, JRNL AUTH 8 R.A.SEDER JRNL TITL A HUMAN MONOCLONAL ANTIBODY PREVENTS MALARIA INFECTION BY JRNL TITL 2 TARGETING A NEW SITE OF VULNERABILITY ON THE PARASITE. JRNL REF NAT. MED. V. 24 408 2018 JRNL REFN ISSN 1546-170X JRNL PMID 29554083 JRNL DOI 10.1038/NM.4512 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6222 - 4.4008 1.00 2807 158 0.1506 0.1699 REMARK 3 2 4.4008 - 3.4937 1.00 2735 139 0.1453 0.1707 REMARK 3 3 3.4937 - 3.0522 1.00 2743 135 0.1776 0.2110 REMARK 3 4 3.0522 - 2.7732 1.00 2720 122 0.1923 0.2439 REMARK 3 5 2.7732 - 2.5745 1.00 2768 150 0.1964 0.2497 REMARK 3 6 2.5745 - 2.4227 1.00 2704 141 0.1947 0.2090 REMARK 3 7 2.4227 - 2.3014 1.00 2716 133 0.1917 0.2375 REMARK 3 8 2.3014 - 2.2012 1.00 2722 150 0.1919 0.3009 REMARK 3 9 2.2012 - 2.1165 1.00 2666 171 0.2051 0.2470 REMARK 3 10 2.1165 - 2.0435 1.00 2726 120 0.2174 0.2595 REMARK 3 11 2.0435 - 1.9796 0.96 2576 141 0.2315 0.2810 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3548 REMARK 3 ANGLE : 0.768 4845 REMARK 3 CHIRALITY : 0.052 552 REMARK 3 PLANARITY : 0.004 619 REMARK 3 DIHEDRAL : 11.835 2145 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.4206 -3.5336 107.0291 REMARK 3 T TENSOR REMARK 3 T11: 0.2472 T22: 0.4019 REMARK 3 T33: 0.2324 T12: 0.0279 REMARK 3 T13: 0.0384 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.5130 L22: 2.7866 REMARK 3 L33: 6.3333 L12: -0.5141 REMARK 3 L13: 0.0865 L23: -0.8956 REMARK 3 S TENSOR REMARK 3 S11: 0.1375 S12: -0.7994 S13: 0.1338 REMARK 3 S21: 0.2143 S22: 0.0573 S23: 0.1743 REMARK 3 S31: -0.2319 S32: -0.5292 S33: -0.1574 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 94 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.3647 -12.9041 84.3277 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.1775 REMARK 3 T33: 0.3010 T12: -0.0066 REMARK 3 T13: -0.0102 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.2059 L22: 1.1747 REMARK 3 L33: 1.2730 L12: -0.1395 REMARK 3 L13: -0.8041 L23: 0.6722 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0377 S13: -0.1292 REMARK 3 S21: -0.0715 S22: -0.0729 S23: 0.0803 REMARK 3 S31: 0.0319 S32: 0.0059 S33: 0.0579 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.6269 -1.0895 113.3715 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.4396 REMARK 3 T33: 0.2734 T12: 0.0248 REMARK 3 T13: -0.0678 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.4790 L22: 2.6815 REMARK 3 L33: 7.3449 L12: -0.2917 REMARK 3 L13: -1.8119 L23: 1.8363 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: -0.8092 S13: 0.0237 REMARK 3 S21: 0.0095 S22: 0.1721 S23: -0.0810 REMARK 3 S31: -0.2973 S32: 0.3323 S33: -0.3212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 33 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.5925 -9.8499 109.2437 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.2609 REMARK 3 T33: 0.2060 T12: 0.0139 REMARK 3 T13: -0.0666 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.6415 L22: 3.5903 REMARK 3 L33: 6.4339 L12: -1.5494 REMARK 3 L13: -2.4521 L23: 0.5429 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.3983 S13: -0.3383 REMARK 3 S21: 0.1441 S22: 0.1036 S23: -0.0231 REMARK 3 S31: 0.3917 S32: 0.2277 S33: -0.0485 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.1173 -6.9773 88.1639 REMARK 3 T TENSOR REMARK 3 T11: 0.2615 T22: 0.2071 REMARK 3 T33: 0.3331 T12: 0.0560 REMARK 3 T13: -0.0354 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.7619 L22: 0.6078 REMARK 3 L33: 1.9288 L12: 0.2027 REMARK 3 L13: -0.2113 L23: 0.5553 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.1658 S13: 0.0405 REMARK 3 S21: -0.0888 S22: 0.0586 S23: -0.0580 REMARK 3 S31: -0.0487 S32: -0.0207 S33: -0.0648 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 129 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.1896 -5.4488 71.7809 REMARK 3 T TENSOR REMARK 3 T11: 0.3238 T22: 0.1803 REMARK 3 T33: 0.3330 T12: 0.0109 REMARK 3 T13: 0.0774 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.7113 L22: 2.3860 REMARK 3 L33: 3.9683 L12: -1.0287 REMARK 3 L13: 1.7074 L23: -1.6358 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: 0.3383 S13: 0.3076 REMARK 3 S21: -0.3809 S22: -0.1033 S23: -0.3120 REMARK 3 S31: -0.0032 S32: 0.2001 S33: 0.0981 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.5442 -3.9208 123.6427 REMARK 3 T TENSOR REMARK 3 T11: 0.4132 T22: 0.8344 REMARK 3 T33: 0.2942 T12: 0.0374 REMARK 3 T13: -0.0045 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 2.6632 L22: 4.1553 REMARK 3 L33: 5.7631 L12: -0.7482 REMARK 3 L13: -0.8921 L23: -3.6200 REMARK 3 S TENSOR REMARK 3 S11: 0.1452 S12: -1.0133 S13: 0.1503 REMARK 3 S21: 0.5071 S22: 0.3721 S23: 0.0659 REMARK 3 S31: -0.0964 S32: -0.4064 S33: -0.3010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 40.614 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM HEPES PH 7.5, 1.4M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.53400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.20950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.53400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.20950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 323 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 CYS L 214 REMARK 465 PRO A 12 REMARK 465 ASN A 13 REMARK 465 ALA A 14 REMARK 465 ASN A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER H 188 O HOH H 301 1.24 REMARK 500 HZ1 LYS L 149 O HOH L 302 1.49 REMARK 500 HH TYR H 27 O HOH H 303 1.51 REMARK 500 HH11 ARG L 142 O HOH L 308 1.56 REMARK 500 OE2 GLU L 161 O HOH L 301 1.92 REMARK 500 OG SER H 188 O HOH H 301 1.98 REMARK 500 NZ LYS L 149 O HOH L 302 2.09 REMARK 500 OE1 GLN L 38 O HOH L 303 2.10 REMARK 500 O HOH L 363 O HOH L 370 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 312 O HOH L 390 2857 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 25 143.75 -171.48 REMARK 500 THR H 96 75.71 36.33 REMARK 500 ALA L 51 -33.18 74.18 REMARK 500 ASN L 138 64.72 61.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B5L RELATED DB: PDB REMARK 900 SAME ANTIBODY WITH OTHER PEPTIDE REMARK 900 RELATED ID: 6B5M RELATED DB: PDB REMARK 900 SAME ANTIBODY WITH OTHER PEPTIDE DBREF 6B5N H 1 218 PDB 6B5N 6B5N 1 218 DBREF 6B5N L 1 214 PDB 6B5N 6B5N 1 214 DBREF 6B5N A 1 15 PDB 6B5N 6B5N 1 15 SEQRES 1 H 226 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 226 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 226 TYR THR PHE THR SER TYR ALA ILE HIS TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY GLN ARG LEU GLU TRP MET GLY TRP ILE LYS SEQRES 5 H 226 ALA GLY ASN GLY ASN THR ARG TYR SER GLN LYS PHE GLN SEQRES 6 H 226 ASP ARG VAL THR ILE THR ARG ASP THR SER THR THR THR SEQRES 7 H 226 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA LEU LEU THR VAL LEU THR PRO SEQRES 9 H 226 ASP ASP ALA PHE ASP ILE TRP GLY GLN GLY THR MET VAL SEQRES 10 H 226 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 226 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 226 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 226 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 226 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 226 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 226 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 226 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 226 LYS SER CYS ASP LYS SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO ASN LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLN SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS HIS GLN TYR TYR SER SER PRO LEU THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 15 ASN VAL ASP PRO ASN ALA ASN PRO ASN VAL ASP PRO ASN SEQRES 2 A 15 ALA ASN HET PCA H 1 13 HETNAM PCA PYROGLUTAMIC ACID FORMUL 1 PCA C5 H7 N O3 FORMUL 4 HOH *214(H2 O) HELIX 1 AA1 THR H 28 SER H 31 5 4 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 ARG H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLN L 79 VAL L 83 5 5 HELIX 9 AA9 SER L 121 GLY L 128 1 8 HELIX 10 AB1 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 LEU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 LYS H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ARG H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 LEU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 ALA H 100C TRP H 103 -1 O PHE H 100D N VAL H 97 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 ASN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 2 LEU L 27C TYR L 27D 0 SHEET 2 AB1 2 LYS L 30 ASN L 31 -1 O LYS L 30 N TYR L 27D SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 CISPEP 1 PHE H 146 PRO H 147 0 -5.23 CISPEP 2 GLU H 148 PRO H 149 0 -2.10 CISPEP 3 SER L 7 PRO L 8 0 -6.36 CISPEP 4 SER L 94 PRO L 95 0 -4.66 CISPEP 5 TYR L 140 PRO L 141 0 1.49 CRYST1 93.068 60.419 83.307 90.00 102.83 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010745 0.000000 0.002447 0.00000 SCALE2 0.000000 0.016551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012311 0.00000 HETATM 1 N PCA H 1 87.854 -25.034 106.936 1.00154.00 N HETATM 2 CA PCA H 1 86.378 -24.765 106.958 1.00151.21 C HETATM 3 CB PCA H 1 85.621 -25.998 107.449 1.00138.38 C HETATM 4 CG PCA H 1 86.576 -27.160 107.246 1.00172.84 C HETATM 5 CD PCA H 1 87.924 -26.489 107.101 1.00192.84 C HETATM 6 OE PCA H 1 88.992 -27.124 107.125 1.00144.42 O HETATM 7 C PCA H 1 85.936 -23.498 107.708 1.00102.86 C HETATM 8 O PCA H 1 84.740 -23.164 107.651 1.00 78.06 O HETATM 9 HA PCA H 1 86.111 -24.641 106.023 1.00181.45 H HETATM 10 HB2 PCA H 1 84.793 -26.115 106.939 1.00166.06 H HETATM 11 HB3 PCA H 1 85.397 -25.904 108.398 1.00166.06 H HETATM 12 HG2 PCA H 1 86.330 -27.673 106.449 1.00207.40 H HETATM 13 HG3 PCA H 1 86.561 -27.757 108.023 1.00207.40 H