HEADER CELL INVASION 04-OCT-17 6B7M TITLE CRYSTAL STRUCTURE OF LEGIONELLA EFFECTOR SDED (LPG2509) IN COMPLEX TITLE 2 WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDED (LPG2509); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLYUBIQUITIN-C; COMPND 7 CHAIN: B, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: LPG2509; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBC; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS LEGIONELLA, UBIQUITIN, SDED, ADPR-UB, PR-UB, PHOSPHODIESTERASE, CELL KEYWDS 2 INVASION EXPDTA X-RAY DIFFRACTION AUTHOR Y.MAO,A.AKTURK,J.WASILKO REVDAT 6 13-MAR-24 6B7M 1 REMARK REVDAT 5 01-JAN-20 6B7M 1 REMARK REVDAT 4 20-FEB-19 6B7M 1 REMARK REVDAT 3 13-JUN-18 6B7M 1 JRNL REVDAT 2 06-JUN-18 6B7M 1 JRNL REVDAT 1 18-APR-18 6B7M 0 JRNL AUTH A.AKTURK,D.J.WASILKO,X.WU,Y.LIU,Y.ZHANG,J.QIU,Z.Q.LUO, JRNL AUTH 2 K.H.REITER,P.S.BRZOVIC,R.E.KLEVIT,Y.MAO JRNL TITL MECHANISM OF PHOSPHORIBOSYL-UBIQUITINATION MEDIATED BY A JRNL TITL 2 SINGLE LEGIONELLA EFFECTOR. JRNL REF NATURE V. 557 729 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29795346 JRNL DOI 10.1038/S41586-018-0147-6 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 52468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3681 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.018 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3813 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3648 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5168 ; 2.033 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8438 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;34.414 ;24.181 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;13.720 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.670 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 573 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4297 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 856 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1871 ; 1.639 ; 1.743 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1870 ; 1.638 ; 1.744 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2338 ; 2.177 ; 2.604 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2339 ; 2.177 ; 2.604 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 3.166 ; 2.100 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1942 ; 3.166 ; 2.100 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2821 ; 4.699 ; 3.012 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4296 ; 5.871 ;14.643 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4217 ; 5.861 ;14.386 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 69.5198 67.3154 17.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.0242 REMARK 3 T33: 0.0129 T12: 0.0194 REMARK 3 T13: -0.0135 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.3303 L22: 0.5283 REMARK 3 L33: 0.8724 L12: 0.2430 REMARK 3 L13: 0.0917 L23: -0.1395 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.0358 S13: -0.0250 REMARK 3 S21: -0.0920 S22: -0.0225 S23: -0.0230 REMARK 3 S31: 0.0755 S32: -0.0902 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 58.9760 61.9460 39.4522 REMARK 3 T TENSOR REMARK 3 T11: 0.0397 T22: 0.1847 REMARK 3 T33: 0.0095 T12: -0.0407 REMARK 3 T13: -0.0053 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.0714 L22: 1.4284 REMARK 3 L33: 0.3482 L12: 0.0046 REMARK 3 L13: -0.1083 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.1706 S13: -0.0794 REMARK 3 S21: 0.0931 S22: -0.1035 S23: 0.0551 REMARK 3 S31: -0.0234 S32: -0.1827 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 76 REMARK 3 ORIGIN FOR THE GROUP (A): 86.0891 95.6747 10.7643 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.0245 REMARK 3 T33: 0.0512 T12: 0.0316 REMARK 3 T13: -0.0158 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.5952 L22: 1.7816 REMARK 3 L33: 1.2570 L12: 1.0389 REMARK 3 L13: -0.5676 L23: -0.6676 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.0406 S13: 0.1996 REMARK 3 S21: -0.1841 S22: -0.0339 S23: 0.0467 REMARK 3 S31: -0.0287 S32: 0.0441 S33: 0.0101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6B7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 67.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.360 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM NACL, 100 MM IMIDAZOLE PH 7.0, REMARK 280 24% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.29650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 313 REMARK 465 GLU A 314 REMARK 465 ILE A 315 REMARK 465 ASP A 316 REMARK 465 ASP A 317 REMARK 465 GLU A 318 REMARK 465 LYS A 319 REMARK 465 ILE A 320 REMARK 465 ASP A 321 REMARK 465 VAL A 322 REMARK 465 LYS A 323 REMARK 465 GLU A 324 REMARK 465 VAL A 325 REMARK 465 ASP A 326 REMARK 465 ASP A 327 REMARK 465 ARG A 328 REMARK 465 GLU A 329 REMARK 465 ILE A 330 REMARK 465 GLU A 331 REMARK 465 LYS A 332 REMARK 465 GLU A 333 REMARK 465 HIS A 334 REMARK 465 GLU A 335 REMARK 465 ILE A 336 REMARK 465 VAL A 337 REMARK 465 VAL A 338 REMARK 465 PRO A 339 REMARK 465 SER A 340 REMARK 465 GLN A 341 REMARK 465 ALA A 342 REMARK 465 THR A 343 REMARK 465 THR A 344 REMARK 465 PRO A 345 REMARK 465 LEU A 346 REMARK 465 SER A 347 REMARK 465 THR A 348 REMARK 465 VAL A 349 REMARK 465 LYS A 350 REMARK 465 THR A 351 REMARK 465 ASP A 352 REMARK 465 SER A 353 REMARK 465 PHE A 354 REMARK 465 VAL A 355 REMARK 465 GLU A 356 REMARK 465 LYS A 357 REMARK 465 LEU A 358 REMARK 465 LEU A 359 REMARK 465 LYS A 360 REMARK 465 PRO A 361 REMARK 465 PHE A 362 REMARK 465 MET A 363 REMARK 465 ILE A 364 REMARK 465 TRP A 365 REMARK 465 LYS A 366 REMARK 465 LYS A 367 REMARK 465 PRO A 368 REMARK 465 GLU A 369 REMARK 465 VAL A 370 REMARK 465 GLN A 371 REMARK 465 THR A 372 REMARK 465 THR A 373 REMARK 465 GLN A 374 REMARK 465 PRO A 375 REMARK 465 THR A 376 REMARK 465 THR A 377 REMARK 465 GLU A 378 REMARK 465 LYS A 379 REMARK 465 THR A 380 REMARK 465 ASN A 381 REMARK 465 LYS A 382 REMARK 465 PRO A 383 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 -62.10 -129.28 REMARK 500 SER A 126 -175.04 -171.43 REMARK 500 CYS A 197 23.69 -145.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 6B7M A 3 383 UNP Q5ZSK8 Q5ZSK8_LEGPH 17 397 DBREF 6B7M B 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 6B7M C 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 6B7M SER A 1 UNP Q5ZSK8 EXPRESSION TAG SEQADV 6B7M MET A 2 UNP Q5ZSK8 EXPRESSION TAG SEQRES 1 A 383 SER MET PRO ILE ILE LEU ASP SER ASP VAL LEU GLU VAL SEQRES 2 A 383 ALA GLU TYR VAL TYR LYS THR ARG LEU SER GLN PRO TYR SEQRES 3 A 383 THR GLU VAL GLY SER GLU TRP GLU TYR ASN TYR LYS ASN SEQRES 4 A 383 PRO THR ALA THR PHE ALA LYS GLY ASP GLY HIS ASN LEU SEQRES 5 A 383 GLN ARG TYR ILE THR ILE ASP GLY LYS GLN LEU HIS ARG SEQRES 6 A 383 PRO ILE HIS GLY LEU ALA HIS THR MET ARG THR LEU MET SEQRES 7 A 383 TYR SER GLN LEU MET TYR CYS SER SER LYS LYS GLN PRO SEQRES 8 A 383 SER PRO HIS VAL CYS GLN ASP GLY ARG THR ILE ALA ASP SEQRES 9 A 383 LEU SER GLU LEU ASP LEU LYS LYS ILE ASN ILE ALA GLN SEQRES 10 A 383 LEU PHE PHE VAL ALA GLY ARG GLU SER GLU ALA SER TYR SEQRES 11 A 383 GLY ASP ALA TYR HIS ARG TYR HIS LEU TYR GLY ALA LYS SEQRES 12 A 383 GLN PHE GLU GLU TYR ALA ARG LYS HIS LEU THR HIS LEU SEQRES 13 A 383 PHE SER GLU GLU GLU ILE ARG LEU TYR SER ARG CYS ILE SEQRES 14 A 383 GLU ASP ARG VAL GLY ASP SER PHE ASP GLY THR PRO GLU SEQRES 15 A 383 GLY TYR ILE ILE HIS LEU SER HIS MET ILE ASP LEU MET SEQRES 16 A 383 ARG CYS LYS SER PRO VAL GLU VAL PHE LEU GLY HIS SER SEQRES 17 A 383 LYS GLY VAL SER GLY ILE VAL PRO THR LEU ILE HIS LEU SEQRES 18 A 383 PHE GLY LYS GLN ASP GLY LEU ASP ILE MET HIS TYR ALA SEQRES 19 A 383 ARG GLY LEU PHE ALA ALA THR GLY GLU ALA VAL PRO TYR SEQRES 20 A 383 ILE ASP SER SER GLU TRP PRO HIS LEU GLY VAL ASP LEU SEQRES 21 A 383 SER ARG VAL GLN ARG ALA LEU SER ILE VAL GLY ASP ILE SEQRES 22 A 383 ASN VAL PRO GLY GLN GLU ALA ASP SER LYS LYS THR ALA SEQRES 23 A 383 GLN ALA GLY PHE SER VAL ASP GLY CYS TYR SER ALA LEU SEQRES 24 A 383 THR SER VAL PRO THR PRO SER TRP TYR GLU LYS GLU LEU SEQRES 25 A 383 LYS GLU ILE ASP ASP GLU LYS ILE ASP VAL LYS GLU VAL SEQRES 26 A 383 ASP ASP ARG GLU ILE GLU LYS GLU HIS GLU ILE VAL VAL SEQRES 27 A 383 PRO SER GLN ALA THR THR PRO LEU SER THR VAL LYS THR SEQRES 28 A 383 ASP SER PHE VAL GLU LYS LEU LEU LYS PRO PHE MET ILE SEQRES 29 A 383 TRP LYS LYS PRO GLU VAL GLN THR THR GLN PRO THR THR SEQRES 30 A 383 GLU LYS THR ASN LYS PRO SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY FORMUL 4 HOH *228(H2 O) HELIX 1 AA1 ASP A 7 ARG A 21 1 15 HELIX 2 AA2 GLY A 30 GLU A 34 5 5 HELIX 3 AA3 ASN A 39 THR A 43 5 5 HELIX 4 AA4 PRO A 66 HIS A 68 5 3 HELIX 5 AA5 GLY A 69 LYS A 89 1 21 HELIX 6 AA6 THR A 101 LEU A 105 5 5 HELIX 7 AA7 SER A 106 PHE A 119 1 14 HELIX 8 AA8 TYR A 130 LEU A 153 1 24 HELIX 9 AA9 SER A 158 ASP A 171 1 14 HELIX 10 AB1 THR A 180 LEU A 194 1 15 HELIX 11 AB2 MET A 195 CYS A 197 5 3 HELIX 12 AB3 SER A 199 LEU A 205 1 7 HELIX 13 AB4 GLY A 213 GLY A 223 1 11 HELIX 14 AB5 GLY A 223 THR A 241 1 19 HELIX 15 AB6 SER A 251 LEU A 256 5 6 HELIX 16 AB7 ASP A 259 GLY A 271 1 13 HELIX 17 AB8 ASP A 281 PHE A 290 1 10 HELIX 18 AB9 SER A 291 SER A 301 1 11 HELIX 19 AC1 THR B 22 GLY B 35 1 14 HELIX 20 AC2 PRO B 37 GLN B 41 5 5 HELIX 21 AC3 LEU B 56 ASN B 60 5 5 HELIX 22 AC4 THR C 22 GLY C 35 1 14 HELIX 23 AC5 PRO C 37 ASP C 39 5 3 HELIX 24 AC6 LEU C 56 ASN C 60 5 5 SHEET 1 AA1 2 TYR A 55 ILE A 58 0 SHEET 2 AA1 2 LYS A 61 HIS A 64 -1 O LEU A 63 N ILE A 56 SHEET 1 AA2 2 ILE A 248 ASP A 249 0 SHEET 2 AA2 2 ASN A 274 VAL A 275 -1 O VAL A 275 N ILE A 248 SHEET 1 AA3 5 THR B 12 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 AA3 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA4 5 THR C 12 GLU C 16 0 SHEET 2 AA4 5 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA4 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA4 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA4 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 CRYST1 64.765 58.593 74.124 90.00 114.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015440 0.000000 0.007088 0.00000 SCALE2 0.000000 0.017067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014845 0.00000