HEADER TOXIN 05-OCT-17 6B81 TITLE CRYSTAL STRUCTURE OF MYOTOXIN II FROM BOTHROPS MOOJENI COMPLEXED TO TITLE 2 CAPRYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 2; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,M-VI,MJTX-II,MYOTOXIN II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334; SOURCE 5 ORGAN: VENOM GLAND KEYWDS MYOTOXIN II, BOTHROPS MOOJENI, PHOSPHOLIPASE A2-LIKE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,J.I.DOS SANTOS,M.R.M.FONTES REVDAT 4 04-OCT-23 6B81 1 REMARK REVDAT 3 01-JAN-20 6B81 1 REMARK REVDAT 2 17-APR-19 6B81 1 REMARK REVDAT 1 03-OCT-18 6B81 0 JRNL AUTH G.H.M.SALVADOR,J.I.DOS SANTOS,R.J.BORGES,M.R.M.FONTES JRNL TITL STRUCTURAL EVIDENCE FOR A FATTY ACID-INDEPENDENT MYOTOXIC JRNL TITL 2 MECHANISM FOR A PHOSPHOLIPASE A2-LIKE TOXIN. JRNL REF BIOCHIM BIOPHYS ACTA V.1866 473 2018 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1570-9639 JRNL PMID 29287778 JRNL DOI 10.1016/J.BBAPAP.2017.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 28283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6739 - 3.7789 0.95 2737 141 0.1560 0.1917 REMARK 3 2 3.7789 - 3.0007 0.99 2783 137 0.1685 0.1796 REMARK 3 3 3.0007 - 2.6218 0.94 2634 153 0.1761 0.2084 REMARK 3 4 2.6218 - 2.3822 0.92 2567 134 0.1831 0.2259 REMARK 3 5 2.3822 - 2.2116 0.93 2603 120 0.1763 0.2002 REMARK 3 6 2.2116 - 2.0812 0.95 2667 138 0.1673 0.1978 REMARK 3 7 2.0812 - 1.9770 0.96 2652 141 0.1741 0.1938 REMARK 3 8 1.9770 - 1.8910 0.98 2719 152 0.1769 0.2156 REMARK 3 9 1.8910 - 1.8182 1.00 2757 153 0.2011 0.2172 REMARK 3 10 1.8182 - 1.7555 0.99 2759 136 0.2258 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2002 REMARK 3 ANGLE : 0.955 2662 REMARK 3 CHIRALITY : 0.039 268 REMARK 3 PLANARITY : 0.005 338 REMARK 3 DIHEDRAL : 14.183 768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9092 8.9077 23.4079 REMARK 3 T TENSOR REMARK 3 T11: 0.0819 T22: 0.1051 REMARK 3 T33: 0.0966 T12: 0.0028 REMARK 3 T13: -0.0056 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.3736 L22: 0.0714 REMARK 3 L33: 0.2672 L12: 0.1381 REMARK 3 L13: -0.1968 L23: -0.1114 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.1328 S13: 0.0884 REMARK 3 S21: 0.0513 S22: -0.0370 S23: 0.0716 REMARK 3 S31: -0.2118 S32: 0.1687 S33: 0.0153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2542 -1.6877 25.1089 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.1304 REMARK 3 T33: 0.1526 T12: 0.0051 REMARK 3 T13: 0.0068 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.0311 L22: 0.0494 REMARK 3 L33: 0.0652 L12: -0.0252 REMARK 3 L13: -0.0317 L23: -0.0333 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: 0.0681 S13: 0.0190 REMARK 3 S21: 0.1490 S22: 0.0470 S23: 0.0205 REMARK 3 S31: 0.0902 S32: 0.0874 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7242 -1.1727 17.7413 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1231 REMARK 3 T33: 0.1466 T12: -0.0165 REMARK 3 T13: -0.0169 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2253 L22: 0.3049 REMARK 3 L33: 0.2751 L12: -0.0743 REMARK 3 L13: -0.2506 L23: 0.1729 REMARK 3 S TENSOR REMARK 3 S11: -0.0908 S12: 0.1252 S13: -0.0610 REMARK 3 S21: -0.1280 S22: -0.0061 S23: 0.0619 REMARK 3 S31: 0.0409 S32: -0.0219 S33: -0.0055 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7779 16.4799 25.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1025 REMARK 3 T33: 0.1226 T12: 0.0208 REMARK 3 T13: -0.0305 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.2742 L22: 0.0946 REMARK 3 L33: 0.3260 L12: 0.0989 REMARK 3 L13: -0.2073 L23: -0.1350 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: -0.0134 S13: 0.0893 REMARK 3 S21: -0.2181 S22: -0.0944 S23: 0.2554 REMARK 3 S31: -0.2459 S32: -0.0416 S33: 0.0306 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5576 1.8714 26.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.1096 REMARK 3 T33: 0.0913 T12: 0.0029 REMARK 3 T13: 0.0134 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.3657 L22: 0.4617 REMARK 3 L33: 0.3021 L12: 0.2621 REMARK 3 L13: -0.2362 L23: 0.1067 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.0531 S13: -0.0102 REMARK 3 S21: 0.1044 S22: 0.0302 S23: 0.0789 REMARK 3 S31: -0.0653 S32: 0.0420 S33: -0.0202 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8037 -12.1299 19.7577 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0874 REMARK 3 T33: 0.1343 T12: 0.0037 REMARK 3 T13: 0.0201 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.2145 L22: 0.2858 REMARK 3 L33: 0.1042 L12: -0.1322 REMARK 3 L13: 0.0738 L23: -0.1676 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.2527 S13: 0.2605 REMARK 3 S21: 0.0626 S22: -0.0707 S23: 0.1643 REMARK 3 S31: 0.0199 S32: -0.0597 S33: 0.0251 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6093 -13.5496 16.9424 REMARK 3 T TENSOR REMARK 3 T11: 0.1563 T22: 0.1715 REMARK 3 T33: 0.2353 T12: -0.0432 REMARK 3 T13: 0.0155 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.0872 L22: 0.0098 REMARK 3 L33: 0.0548 L12: -0.0243 REMARK 3 L13: 0.0228 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: -0.1881 S12: -0.0091 S13: -0.1372 REMARK 3 S21: -0.0855 S22: 0.0706 S23: -0.2393 REMARK 3 S31: -0.0952 S32: 0.0394 S33: -0.0108 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7990 -14.2975 12.2083 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1158 REMARK 3 T33: 0.1018 T12: -0.0040 REMARK 3 T13: -0.0032 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.0511 L22: -0.0093 REMARK 3 L33: 0.0134 L12: -0.0231 REMARK 3 L13: -0.0034 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.0142 S13: -0.2573 REMARK 3 S21: -0.0065 S22: 0.0636 S23: -0.0139 REMARK 3 S31: 0.1639 S32: 0.0720 S33: 0.0012 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7470 -7.1155 18.5347 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1350 REMARK 3 T33: 0.1346 T12: -0.0007 REMARK 3 T13: 0.0213 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.0147 L22: 0.0262 REMARK 3 L33: 0.0064 L12: -0.0242 REMARK 3 L13: -0.0112 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.2622 S13: -0.1293 REMARK 3 S21: 0.0115 S22: 0.1359 S23: -0.0512 REMARK 3 S31: -0.0084 S32: 0.0631 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6341 0.6026 6.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.1504 REMARK 3 T33: 0.1385 T12: 0.0264 REMARK 3 T13: -0.0028 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.3289 L22: 0.0845 REMARK 3 L33: 0.0834 L12: -0.1094 REMARK 3 L13: -0.0782 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.2529 S12: 0.1434 S13: 0.2155 REMARK 3 S21: -0.4205 S22: -0.0732 S23: 0.0272 REMARK 3 S31: -0.0031 S32: -0.0732 S33: 0.0527 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4438 -14.3215 3.3784 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.2154 REMARK 3 T33: 0.2352 T12: -0.0003 REMARK 3 T13: -0.0617 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.1000 L22: 0.3090 REMARK 3 L33: 0.4278 L12: 0.1842 REMARK 3 L13: -0.2059 L23: -0.3592 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.0909 S13: 0.1272 REMARK 3 S21: 0.2573 S22: -0.0662 S23: 0.3888 REMARK 3 S31: -0.3402 S32: -0.1231 S33: 0.0229 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8705 -22.1710 8.3714 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1977 REMARK 3 T33: 0.1404 T12: 0.0110 REMARK 3 T13: 0.0077 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 0.0261 REMARK 3 L33: 0.0176 L12: -0.0062 REMARK 3 L13: 0.0047 L23: -0.0211 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.1180 S13: -0.2676 REMARK 3 S21: -0.1700 S22: 0.1230 S23: 0.0109 REMARK 3 S31: 0.1273 S32: 0.0746 S33: -0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2074 -21.6343 0.2927 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: -0.0288 REMARK 3 T33: -0.0048 T12: -0.0037 REMARK 3 T13: -0.1052 T23: -0.1439 REMARK 3 L TENSOR REMARK 3 L11: 0.8897 L22: 0.2010 REMARK 3 L33: 1.2355 L12: 0.3523 REMARK 3 L13: 0.3892 L23: 0.4195 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.0445 S13: 0.0405 REMARK 3 S21: -0.1393 S22: 0.1656 S23: 0.0387 REMARK 3 S31: -0.0173 S32: 0.0602 S33: 0.4064 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7195 -7.2606 7.5157 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1517 REMARK 3 T33: 0.1026 T12: 0.0053 REMARK 3 T13: 0.0036 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3716 L22: 0.9337 REMARK 3 L33: 0.3662 L12: -0.1844 REMARK 3 L13: -0.0577 L23: 0.1103 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.0015 S13: 0.0677 REMARK 3 S21: -0.3456 S22: -0.0538 S23: -0.1471 REMARK 3 S31: -0.1429 S32: 0.0410 S33: 0.0623 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9731 6.7740 17.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1174 REMARK 3 T33: 0.1217 T12: 0.0122 REMARK 3 T13: 0.0178 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.1601 L22: 0.1795 REMARK 3 L33: 0.2205 L12: 0.0245 REMARK 3 L13: 0.1443 L23: 0.1236 REMARK 3 S TENSOR REMARK 3 S11: 0.1842 S12: 0.0651 S13: -0.0354 REMARK 3 S21: -0.1429 S22: -0.0374 S23: -0.1246 REMARK 3 S31: 0.0521 S32: 0.3300 S33: 0.0955 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6918 8.2016 0.6029 REMARK 3 T TENSOR REMARK 3 T11: 0.5803 T22: -0.0662 REMARK 3 T33: 0.0355 T12: 0.1970 REMARK 3 T13: 0.0233 T23: 0.1923 REMARK 3 L TENSOR REMARK 3 L11: 0.0876 L22: 0.0504 REMARK 3 L33: 0.0671 L12: 0.0309 REMARK 3 L13: 0.0748 L23: 0.0066 REMARK 3 S TENSOR REMARK 3 S11: 0.2151 S12: 0.0317 S13: -0.0177 REMARK 3 S21: -0.1837 S22: -0.0069 S23: 0.0709 REMARK 3 S31: 0.0552 S32: -0.0374 S33: 0.1516 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG4000, 0.1 M TRIS HCL, 0.25 M REMARK 280 LITHIUM SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.84150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 394 O HOH A 402 2.01 REMARK 500 O HOH B 324 O HOH A 410 2.04 REMARK 500 O HOH B 418 O HOH B 444 2.05 REMARK 500 O HOH A 405 O HOH A 422 2.10 REMARK 500 O LYS B 69 O HOH B 301 2.11 REMARK 500 O HOH B 416 O HOH B 470 2.12 REMARK 500 O HOH B 404 O HOH B 420 2.13 REMARK 500 O HOH A 458 O HOH A 463 2.13 REMARK 500 NZ LYS A 115 O2 SO4 A 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 86 -116.91 2.34 REMARK 500 ASN B 87 -179.81 66.31 REMARK 500 VAL A 24 37.81 -141.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 498 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 499 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 500 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 502 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 503 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 468 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 469 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 470 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 471 DISTANCE = 7.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCA A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KF3 RELATED DB: PDB REMARK 900 SAME CRYSTAL STRUCTURE COMPLEXED TO PEG4000 REMARK 900 RELATED ID: 4YV5 RELATED DB: PDB REMARK 900 SAME CRYSTAL STRUCTURE COMPLEXED TO SURAMIN INHIBITOR DBREF 6B81 B 1 133 UNP Q9I834 PA2H2_BOTMO 1 122 DBREF 6B81 A 1 133 UNP Q9I834 PA2H2_BOTMO 1 122 SEQRES 1 B 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 B 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 B 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 B 122 LYS ALA ASP PRO CYS SEQRES 1 A 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 A 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 A 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 A 122 LYS ALA ASP PRO CYS HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET OCA B 204 10 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET OCA A 204 10 HETNAM SO4 SULFATE ION HETNAM OCA OCTANOIC ACID (CAPRYLIC ACID) FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 OCA 2(C8 H16 O2) FORMUL 11 HOH *374(H2 O) HELIX 1 AA1 SER B 1 GLY B 15 1 14 HELIX 2 AA2 ASN B 17 GLY B 23 1 7 HELIX 3 AA3 ASP B 39 LYS B 57 1 16 HELIX 4 AA4 ASN B 88 ASN B 109 1 21 HELIX 5 AA5 LEU B 110 TYR B 113 5 4 HELIX 6 AA6 ASN B 114 ARG B 118 5 5 HELIX 7 AA7 LEU B 122 CYS B 127 5 5 HELIX 8 AA8 LEU A 2 GLY A 15 1 13 HELIX 9 AA9 ASN A 17 GLY A 23 1 7 HELIX 10 AB1 ASP A 39 LYS A 57 1 16 HELIX 11 AB2 ASN A 88 ASN A 109 1 21 HELIX 12 AB3 LEU A 110 TYR A 113 5 4 HELIX 13 AB4 ASN A 114 ARG A 118 5 5 HELIX 14 AB5 LEU A 122 CYS A 127 5 5 SHEET 1 AA1 2 TYR B 75 LYS B 78 0 SHEET 2 AA1 2 THR B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SHEET 1 AA2 2 TYR A 75 LYS A 78 0 SHEET 2 AA2 2 THR A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SSBOND 1 CYS B 27 CYS B 127 1555 1555 2.04 SSBOND 2 CYS B 29 CYS B 45 1555 1555 2.05 SSBOND 3 CYS B 44 CYS B 105 1555 1555 2.05 SSBOND 4 CYS B 50 CYS B 133 1555 1555 2.03 SSBOND 5 CYS B 51 CYS B 98 1555 1555 2.03 SSBOND 6 CYS B 61 CYS B 90 1555 1555 2.04 SSBOND 7 CYS B 84 CYS B 96 1555 1555 2.04 SSBOND 8 CYS A 27 CYS A 127 1555 1555 2.04 SSBOND 9 CYS A 29 CYS A 45 1555 1555 2.06 SSBOND 10 CYS A 44 CYS A 105 1555 1555 2.05 SSBOND 11 CYS A 50 CYS A 133 1555 1555 2.04 SSBOND 12 CYS A 51 CYS A 98 1555 1555 2.03 SSBOND 13 CYS A 61 CYS A 90 1555 1555 2.03 SSBOND 14 CYS A 84 CYS A 96 1555 1555 2.04 SITE 1 AC1 6 LYS B 16 ASN B 17 LYS B 20 HOH B 305 SITE 2 AC1 6 HOH B 319 HOH B 348 SITE 1 AC2 5 LYS B 16 LYS B 20 LYS B 115 ARG B 118 SITE 2 AC2 5 HOH B 373 SITE 1 AC3 5 GLY B 33 ARG B 34 LYS B 53 HOH B 333 SITE 2 AC3 5 HOH B 361 SITE 1 AC4 7 TYR B 22 CYS B 29 GLY B 30 CYS B 45 SITE 2 AC4 7 HIS B 48 LYS B 49 HOH B 418 SITE 1 AC5 7 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 2 AC5 7 HOH A 368 HOH A 394 HOH A 402 SITE 1 AC6 6 LYS A 16 ASN A 17 LYS A 20 HOH A 303 SITE 2 AC6 6 HOH A 332 HOH A 364 SITE 1 AC7 4 ARG A 34 LYS A 53 HOH A 313 HOH A 397 SITE 1 AC8 9 LEU A 2 PRO A 18 TYR A 22 ASN A 28 SITE 2 AC8 9 CYS A 29 GLY A 30 HIS A 48 LYS A 49 SITE 3 AC8 9 TYR B 121 CRYST1 51.061 61.683 54.027 90.00 118.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019584 0.000000 0.010825 0.00000 SCALE2 0.000000 0.016212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021148 0.00000