HEADER LIPID TRANSPORT/ACTIVATOR 06-OCT-17 6B8B
TITLE E. COLI LPTB IN COMPLEX WITH ADP AND A NOVOBIOCIN DERIVATIVE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM ATP-BINDING PROTEIN LPTB;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.6.3.-;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12);
SOURCE 3 ORGANISM_TAXID: 83333;
SOURCE 4 STRAIN: K12;
SOURCE 5 GENE: LPTB, YHBG, B3201, JW3168;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1452720
KEYWDS LPTB, ABC TRANSPORTER, LPS TRANSPORT, LIPID TRANSPORT, LIPID
KEYWDS 2 TRANSPORT-ACTIVATOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.D.MANDLER,T.W.OWENS,M.B.LAZARUS,J.M.MAY,D.K.KAHNE
REVDAT 5 04-OCT-23 6B8B 1 REMARK
REVDAT 4 06-JAN-21 6B8B 1 COMPND AUTHOR HETNAM LINK
REVDAT 3 01-JAN-20 6B8B 1 REMARK
REVDAT 2 13-DEC-17 6B8B 1 JRNL
REVDAT 1 06-DEC-17 6B8B 0
JRNL AUTH J.M.MAY,T.W.OWENS,M.D.MANDLER,B.W.SIMPSON,M.B.LAZARUS,
JRNL AUTH 2 D.J.SHERMAN,R.M.DAVIS,S.OKUDA,W.MASSEFSKI,N.RUIZ,D.KAHNE
JRNL TITL THE ANTIBIOTIC NOVOBIOCIN BINDS AND ACTIVATES THE ATPASE
JRNL TITL 2 THAT POWERS LIPOPOLYSACCHARIDE TRANSPORT.
JRNL REF J. AM. CHEM. SOC. V. 139 17221 2017
JRNL REFN ESSN 1520-5126
JRNL PMID 29135241
JRNL DOI 10.1021/JACS.7B07736
REMARK 2
REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.11_2567
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.72
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1
REMARK 3 NUMBER OF REFLECTIONS : 30170
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.182
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.224
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 1528
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 43.7259 - 4.3356 0.95 2595 122 0.1636 0.1968
REMARK 3 2 4.3356 - 3.4417 0.95 2581 126 0.1446 0.1815
REMARK 3 3 3.4417 - 3.0068 0.96 2617 141 0.1604 0.2087
REMARK 3 4 3.0068 - 2.7319 0.97 2617 145 0.1775 0.2205
REMARK 3 5 2.7319 - 2.5361 0.97 2656 122 0.1821 0.2387
REMARK 3 6 2.5361 - 2.3866 0.96 2593 155 0.1876 0.2695
REMARK 3 7 2.3866 - 2.2671 0.96 2625 125 0.2045 0.2164
REMARK 3 8 2.2671 - 2.1684 0.96 2579 131 0.2130 0.2591
REMARK 3 9 2.1684 - 2.0849 0.97 2672 147 0.2265 0.2715
REMARK 3 10 2.0849 - 2.0130 0.97 2625 158 0.2490 0.3258
REMARK 3 11 2.0130 - 1.9500 0.94 2482 156 0.2864 0.2707
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.240
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 24.27
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.11
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 1942
REMARK 3 ANGLE : 0.912 2651
REMARK 3 CHIRALITY : 0.179 309
REMARK 3 PLANARITY : 0.003 337
REMARK 3 DIHEDRAL : 17.010 1163
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 12
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: (CHAIN A AND RESID 2:11)
REMARK 3 ORIGIN FOR THE GROUP (A): -22.2327 -1.3836 10.0977
REMARK 3 T TENSOR
REMARK 3 T11: 0.1762 T22: 0.1620
REMARK 3 T33: 0.2330 T12: 0.0021
REMARK 3 T13: 0.0011 T23: -0.0260
REMARK 3 L TENSOR
REMARK 3 L11: 0.0712 L22: 0.1091
REMARK 3 L33: 0.0995 L12: 0.0965
REMARK 3 L13: -0.1589 L23: -0.0801
REMARK 3 S TENSOR
REMARK 3 S11: 0.2207 S12: 0.0504 S13: -0.1388
REMARK 3 S21: -0.1519 S22: -0.1992 S23: -0.0128
REMARK 3 S31: -0.1062 S32: -0.2627 S33: -0.0016
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: (CHAIN A AND RESID 12:20)
REMARK 3 ORIGIN FOR THE GROUP (A): -28.8410 12.3451 16.7182
REMARK 3 T TENSOR
REMARK 3 T11: 0.2377 T22: 0.2875
REMARK 3 T33: 0.4436 T12: 0.0721
REMARK 3 T13: 0.0568 T23: -0.0671
REMARK 3 L TENSOR
REMARK 3 L11: 0.0363 L22: 0.0170
REMARK 3 L33: 0.0315 L12: -0.0440
REMARK 3 L13: -0.0439 L23: 0.0012
REMARK 3 S TENSOR
REMARK 3 S11: -0.0529 S12: 0.1430 S13: 0.8907
REMARK 3 S21: 0.0582 S22: 0.0269 S23: 0.8671
REMARK 3 S31: 0.1354 S32: -0.3298 S33: -0.0001
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: (CHAIN A AND RESID 21:55)
REMARK 3 ORIGIN FOR THE GROUP (A): -17.2302 4.2382 11.5288
REMARK 3 T TENSOR
REMARK 3 T11: 0.1427 T22: 0.1095
REMARK 3 T33: 0.1679 T12: -0.0130
REMARK 3 T13: -0.0047 T23: -0.0128
REMARK 3 L TENSOR
REMARK 3 L11: 0.6065 L22: 0.1372
REMARK 3 L33: 0.4740 L12: -0.0245
REMARK 3 L13: 0.2402 L23: -0.1675
REMARK 3 S TENSOR
REMARK 3 S11: 0.0735 S12: 0.0016 S13: -0.0053
REMARK 3 S21: -0.0158 S22: -0.0773 S23: 0.0771
REMARK 3 S31: -0.1049 S32: -0.0531 S33: -0.0001
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: (CHAIN A AND RESID 56:76)
REMARK 3 ORIGIN FOR THE GROUP (A): -21.4225 -6.7065 17.0641
REMARK 3 T TENSOR
REMARK 3 T11: 0.2115 T22: 0.1546
REMARK 3 T33: 0.2293 T12: -0.0440
REMARK 3 T13: 0.0383 T23: -0.0036
REMARK 3 L TENSOR
REMARK 3 L11: 0.1752 L22: 0.1526
REMARK 3 L33: 0.2418 L12: -0.0158
REMARK 3 L13: -0.0993 L23: 0.0312
REMARK 3 S TENSOR
REMARK 3 S11: -0.0053 S12: -0.1581 S13: -0.1545
REMARK 3 S21: 0.2666 S22: -0.1263 S23: 0.2842
REMARK 3 S31: 0.3555 S32: -0.2167 S33: 0.0021
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: (CHAIN A AND RESID 77:89)
REMARK 3 ORIGIN FOR THE GROUP (A): -9.1118 1.5706 20.6224
REMARK 3 T TENSOR
REMARK 3 T11: 0.2612 T22: 0.1890
REMARK 3 T33: 0.1389 T12: -0.0339
REMARK 3 T13: -0.0032 T23: -0.0142
REMARK 3 L TENSOR
REMARK 3 L11: 0.2258 L22: 0.1711
REMARK 3 L33: 0.0752 L12: 0.1722
REMARK 3 L13: -0.1891 L23: 0.1504
REMARK 3 S TENSOR
REMARK 3 S11: 0.1252 S12: -0.4020 S13: 0.0252
REMARK 3 S21: -0.0215 S22: -0.2241 S23: 0.0821
REMARK 3 S31: 0.1199 S32: 0.1346 S33: 0.0001
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: (CHAIN A AND RESID 90:108)
REMARK 3 ORIGIN FOR THE GROUP (A): 0.6981 -2.5683 29.0205
REMARK 3 T TENSOR
REMARK 3 T11: 0.2495 T22: 0.3111
REMARK 3 T33: 0.1815 T12: -0.0056
REMARK 3 T13: -0.0047 T23: -0.0270
REMARK 3 L TENSOR
REMARK 3 L11: 0.0757 L22: 0.1401
REMARK 3 L33: 0.3780 L12: -0.2401
REMARK 3 L13: 0.3795 L23: -0.2749
REMARK 3 S TENSOR
REMARK 3 S11: 0.1069 S12: 0.1202 S13: -0.1137
REMARK 3 S21: 0.1822 S22: -0.1054 S23: 0.0910
REMARK 3 S31: -0.0203 S32: 0.2043 S33: 0.0000
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: (CHAIN A AND RESID 109:155)
REMARK 3 ORIGIN FOR THE GROUP (A): 5.5915 -0.7971 22.6080
REMARK 3 T TENSOR
REMARK 3 T11: 0.2228 T22: 0.4587
REMARK 3 T33: 0.1853 T12: 0.0449
REMARK 3 T13: -0.0108 T23: -0.0351
REMARK 3 L TENSOR
REMARK 3 L11: 1.5882 L22: 0.8291
REMARK 3 L33: 1.2814 L12: 0.6922
REMARK 3 L13: 0.6517 L23: -0.1702
REMARK 3 S TENSOR
REMARK 3 S11: 0.0845 S12: 0.7488 S13: -0.1189
REMARK 3 S21: 0.0902 S22: 0.0887 S23: -0.0772
REMARK 3 S31: 0.1311 S32: 0.5911 S33: 0.1741
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: (CHAIN A AND RESID 156:177)
REMARK 3 ORIGIN FOR THE GROUP (A): -2.0648 6.9906 11.9780
REMARK 3 T TENSOR
REMARK 3 T11: 0.1293 T22: 0.1389
REMARK 3 T33: 0.1647 T12: -0.0257
REMARK 3 T13: 0.0274 T23: -0.0258
REMARK 3 L TENSOR
REMARK 3 L11: 0.2704 L22: -0.0040
REMARK 3 L33: 0.2371 L12: -0.0582
REMARK 3 L13: 0.0783 L23: 0.0196
REMARK 3 S TENSOR
REMARK 3 S11: 0.0676 S12: -0.2269 S13: 0.0334
REMARK 3 S21: -0.0547 S22: 0.0182 S23: -0.0280
REMARK 3 S31: 0.0572 S32: 0.0850 S33: -0.0000
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: (CHAIN A AND RESID 178:186)
REMARK 3 ORIGIN FOR THE GROUP (A): 1.0017 -1.5864 6.6173
REMARK 3 T TENSOR
REMARK 3 T11: 0.2117 T22: 0.1692
REMARK 3 T33: 0.2789 T12: -0.0325
REMARK 3 T13: -0.0110 T23: 0.0117
REMARK 3 L TENSOR
REMARK 3 L11: 0.0177 L22: 0.0082
REMARK 3 L33: -0.0077 L12: 0.0830
REMARK 3 L13: 0.0148 L23: -0.0071
REMARK 3 S TENSOR
REMARK 3 S11: 0.0492 S12: -0.0725 S13: -0.1943
REMARK 3 S21: -0.0448 S22: -0.0935 S23: -0.0978
REMARK 3 S31: -0.0435 S32: 0.0441 S33: -0.0000
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: (CHAIN A AND RESID 187:200)
REMARK 3 ORIGIN FOR THE GROUP (A): -7.7453 8.4831 6.3303
REMARK 3 T TENSOR
REMARK 3 T11: 0.1445 T22: 0.1375
REMARK 3 T33: 0.2006 T12: -0.0107
REMARK 3 T13: -0.0140 T23: 0.0030
REMARK 3 L TENSOR
REMARK 3 L11: 0.1109 L22: 0.2466
REMARK 3 L33: 0.1196 L12: 0.0496
REMARK 3 L13: 0.1130 L23: 0.1729
REMARK 3 S TENSOR
REMARK 3 S11: -0.1298 S12: -0.0397 S13: 0.1715
REMARK 3 S21: 0.1898 S22: 0.0806 S23: -0.2246
REMARK 3 S31: 0.0918 S32: -0.0604 S33: 0.0027
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: (CHAIN A AND RESID 201:225)
REMARK 3 ORIGIN FOR THE GROUP (A): -16.1021 7.6319 0.0716
REMARK 3 T TENSOR
REMARK 3 T11: 0.1488 T22: 0.1459
REMARK 3 T33: 0.1584 T12: 0.0100
REMARK 3 T13: -0.0045 T23: 0.0032
REMARK 3 L TENSOR
REMARK 3 L11: 0.1673 L22: 0.0459
REMARK 3 L33: 0.3846 L12: -0.0333
REMARK 3 L13: 0.0962 L23: -0.0396
REMARK 3 S TENSOR
REMARK 3 S11: 0.0616 S12: 0.2804 S13: 0.0356
REMARK 3 S21: -0.0819 S22: -0.0904 S23: -0.0092
REMARK 3 S31: -0.0576 S32: -0.1448 S33: -0.0001
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: (CHAIN A AND RESID 226:232)
REMARK 3 ORIGIN FOR THE GROUP (A): -17.6509 16.3589 -6.6306
REMARK 3 T TENSOR
REMARK 3 T11: 0.2836 T22: 0.2913
REMARK 3 T33: 0.2430 T12: 0.0638
REMARK 3 T13: -0.0457 T23: 0.0507
REMARK 3 L TENSOR
REMARK 3 L11: 0.0676 L22: 0.0358
REMARK 3 L33: 0.0567 L12: 0.0472
REMARK 3 L13: -0.0147 L23: -0.0735
REMARK 3 S TENSOR
REMARK 3 S11: 0.2969 S12: 0.2791 S13: 0.0104
REMARK 3 S21: -0.1335 S22: -0.4098 S23: 0.7348
REMARK 3 S31: -0.0249 S32: 0.1605 S33: -0.0000
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6B8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-17.
REMARK 100 THE DEPOSITION ID IS D_1000230440.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 20-AUG-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52602
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870
REMARK 200 RESOLUTION RANGE LOW (A) : 61.480
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 200 DATA REDUNDANCY : 2.900
REMARK 200 R MERGE (I) : 0.08000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6
REMARK 200 DATA REDUNDANCY IN SHELL : 2.60
REMARK 200 R MERGE FOR SHELL (I) : 0.67500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4P32
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 38.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH = 6.5, 30% W/V PEG4000,
REMARK 280 1.3MM NOVOBIOCIN-ADAMANTYL, PH 6.5, VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.01500
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.39000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.01500
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.39000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LEU A 235
REMARK 465 GLY A 236
REMARK 465 GLU A 237
REMARK 465 ASP A 238
REMARK 465 PHE A 239
REMARK 465 ARG A 240
REMARK 465 LEU A 241
REMARK 465 GLU A 242
REMARK 465 HIS A 243
REMARK 465 HIS A 244
REMARK 465 HIS A 245
REMARK 465 HIS A 246
REMARK 465 HIS A 247
REMARK 465 HIS A 248
REMARK 465 HIS A 249
REMARK 465 HIS A 250
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 VAL A 210 N CA C O CB CG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NE2 GLN A 85 O HOH A 401 2.15
REMARK 500 O HOH A 464 O HOH A 494 2.16
REMARK 500 OE1 GLU A 120 O HOH A 402 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 63 -120.47 52.28
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 301 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 THR A 43 OG1
REMARK 620 2 ADP A 303 O2B 91.5
REMARK 620 3 HOH A 401 O 86.4 177.6
REMARK 620 4 HOH A 418 O 175.0 90.5 91.6
REMARK 620 5 HOH A 433 O 91.9 91.2 87.6 92.6
REMARK 620 6 HOH A 446 O 88.5 94.2 87.0 86.7 174.5
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CZJ A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 303
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6B89 RELATED DB: PDB
DBREF 6B8B A 2 241 UNP P0A9V1 LPTB_ECOLI 2 241
SEQADV 6B8B GLU A 242 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 243 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 244 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 245 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 246 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 247 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 248 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 249 UNP P0A9V1 EXPRESSION TAG
SEQADV 6B8B HIS A 250 UNP P0A9V1 EXPRESSION TAG
SEQRES 1 A 249 ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR LYS
SEQRES 2 A 249 GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL ASN
SEQRES 3 A 249 SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY ALA
SEQRES 4 A 249 GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE VAL
SEQRES 5 A 249 PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP ASP
SEQRES 6 A 249 ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG GLY
SEQRES 7 A 249 ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG ARG
SEQRES 8 A 249 LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN ILE
SEQRES 9 A 249 ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG ALA
SEQRES 10 A 249 ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU ARG
SEQRES 11 A 249 ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG ARG
SEQRES 12 A 249 ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO LYS
SEQRES 13 A 249 PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP PRO
SEQRES 14 A 249 ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS LEU
SEQRES 15 A 249 ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS ASN
SEQRES 16 A 249 VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR ILE
SEQRES 17 A 249 VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO THR
SEQRES 18 A 249 GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR LEU
SEQRES 19 A 249 GLY GLU ASP PHE ARG LEU GLU HIS HIS HIS HIS HIS HIS
SEQRES 20 A 249 HIS HIS
HET MG A 301 1
HET CZJ A 302 80
HET ADP A 303 39
HETNAM MG MAGNESIUM ION
HETNAM CZJ (3S,5S,7S)-N-{7-[(3-O-CARBAMOYL-6-DEOXY-5-METHYL-4-O-
HETNAM 2 CZJ METHYL-BETA-D-GULOPYRANOSYL)OXY]-4-HYDROXY-8-METHYL-2-
HETNAM 3 CZJ OXO-2H-1-BEN ZOPYRAN-3-YL}TRICYCLO[3.3.1.1~3,
HETNAM 4 CZJ 7~]DECANE-1-CARBOXAMIDE
HETNAM ADP ADENOSINE-5'-DIPHOSPHATE
HETSYN CZJ NOVOBIOCIN DERIVATIVE
FORMUL 2 MG MG 2+
FORMUL 3 CZJ C30 H38 N2 O10
FORMUL 4 ADP C10 H15 N5 O10 P2
FORMUL 5 HOH *105(H2 O)
HELIX 1 AA1 GLY A 41 GLY A 51 1 11
HELIX 2 AA2 PRO A 71 ARG A 78 1 8
HELIX 3 AA3 SER A 94 GLN A 104 1 11
HELIX 4 AA4 SER A 110 PHE A 125 1 16
HELIX 5 AA5 ILE A 127 ARG A 131 5 5
HELIX 6 AA6 MET A 134 LEU A 138 5 5
HELIX 7 AA7 SER A 139 ALA A 153 1 15
HELIX 8 AA8 ASP A 169 SER A 186 1 18
HELIX 9 AA9 ASN A 196 ALA A 202 1 7
HELIX 10 AB1 THR A 220 LEU A 225 1 6
HELIX 11 AB2 ASP A 227 TYR A 234 1 8
SHEET 1 AA1 4 ARG A 16 ASN A 27 0
SHEET 2 AA1 4 THR A 3 TYR A 13 -1 N LYS A 11 O VAL A 19
SHEET 3 AA1 4 ALA A 57 ILE A 62 -1 O ILE A 61 N THR A 5
SHEET 4 AA1 4 ASP A 65 ASP A 66 -1 O ASP A 65 N ILE A 62
SHEET 1 AA2 6 ILE A 80 LEU A 83 0
SHEET 2 AA2 6 PHE A 158 LEU A 161 1 O LEU A 160 N LEU A 83
SHEET 3 AA2 6 GLY A 189 ASP A 194 1 O LEU A 191 N LEU A 161
SHEET 4 AA2 6 ILE A 31 LEU A 35 1 N VAL A 32 O VAL A 190
SHEET 5 AA2 6 ARG A 206 SER A 211 1 O TYR A 208 N GLY A 33
SHEET 6 AA2 6 HIS A 214 GLY A 219 -1 O HIS A 214 N SER A 211
LINK OG1 THR A 43 MG MG A 301 1555 1555 2.03
LINK MG MG A 301 O2B ADP A 303 1555 1555 2.07
LINK MG MG A 301 O HOH A 401 1555 1555 2.05
LINK MG MG A 301 O HOH A 418 1555 1555 2.05
LINK MG MG A 301 O HOH A 433 1555 1555 1.91
LINK MG MG A 301 O HOH A 446 1555 1555 1.97
SITE 1 AC1 6 THR A 43 ADP A 303 HOH A 401 HOH A 418
SITE 2 AC1 6 HOH A 433 HOH A 446
SITE 1 AC2 15 LEU A 72 ALA A 76 PRO A 84 GLU A 86
SITE 2 AC2 15 ALA A 87 PHE A 90 ARG A 91 ARG A 92
SITE 3 AC2 15 ALA A 101 VAL A 102 ARG A 150 HOH A 406
SITE 4 AC2 15 HOH A 417 HOH A 428 HOH A 465
SITE 1 AC3 19 TYR A 13 ARG A 16 VAL A 18 GLY A 39
SITE 2 AC3 19 ALA A 40 GLY A 41 LYS A 42 THR A 43
SITE 3 AC3 19 THR A 44 ASP A 65 ARG A 78 MG A 301
SITE 4 AC3 19 HOH A 405 HOH A 418 HOH A 433 HOH A 446
SITE 5 AC3 19 HOH A 460 HOH A 463 HOH A 484
CRYST1 104.030 34.780 62.710 90.00 101.38 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009613 0.000000 0.001935 0.00000
SCALE2 0.000000 0.028752 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016266 0.00000