data_6BBE # _entry.id 6BBE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6BBE WWPDB D_1000230613 # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'model used for phasing' _pdbx_database_related.db_id 4DN8 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6BBE _pdbx_database_status.recvd_initial_deposition_date 2017-10-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'van Eijk, M.' 1 ? 'Rynkiewicz, M.J.' 2 ? 'Khatri, K.' 3 ? 'Leymarie, N.' 4 ? 'Zaia, J.' 5 ? 'White, M.R.' 6 ? 'Hartshorn, K.L.' 7 ? 'Cafarella, T.R.' 8 ? 'van Die, I.' 9 ? 'Hessing, M.' 10 ? 'Seaton, B.A.' 11 ? 'Haagsman, H.P.' 12 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 293 _citation.language ? _citation.page_first 10646 _citation.page_last 10662 _citation.title 'Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.RA117.001430 _citation.pdbx_database_id_PubMed 29769321 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'van Eijk, M.' 1 ? primary 'Rynkiewicz, M.J.' 2 ? primary 'Khatri, K.' 3 ? primary 'Leymarie, N.' 4 ? primary 'Zaia, J.' 5 ? primary 'White, M.R.' 6 ? primary 'Hartshorn, K.L.' 7 ? primary 'Cafarella, T.R.' 8 ? primary 'van Die, I.' 9 ? primary 'Hessing, M.' 10 ? primary 'Seaton, B.A.' 11 ? primary 'Haagsman, H.P.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6BBE _cell.details ? _cell.formula_units_Z ? _cell.length_a 66.015 _cell.length_a_esd ? _cell.length_b 66.015 _cell.length_b_esd ? _cell.length_c 64.658 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pulmonary surfactant-associated protein D' 17043.971 1 ? ? ? ? 2 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 1317.209 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn '2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL' 252.305 1 ? ? ? ? 5 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SP-D,Lung surfactant protein D' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKTFQDAQQVCTQAGGQMASPRSETENEALSQ LVTAQNKAAFLSMTDIKTEGNFTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRLVICEF ; _entity_poly.pdbx_seq_one_letter_code_can ;GITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKTFQDAQQVCTQAGGQMASPRSETENEALSQ LVTAQNKAAFLSMTDIKTEGNFTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRLVICEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 THR n 1 4 ALA n 1 5 LEU n 1 6 ARG n 1 7 GLN n 1 8 GLN n 1 9 VAL n 1 10 GLU n 1 11 THR n 1 12 LEU n 1 13 GLN n 1 14 GLY n 1 15 GLN n 1 16 VAL n 1 17 GLN n 1 18 ARG n 1 19 LEU n 1 20 GLN n 1 21 LYS n 1 22 ALA n 1 23 PHE n 1 24 SER n 1 25 GLN n 1 26 TYR n 1 27 LYS n 1 28 LYS n 1 29 VAL n 1 30 GLU n 1 31 LEU n 1 32 PHE n 1 33 PRO n 1 34 ASN n 1 35 GLY n 1 36 ARG n 1 37 GLY n 1 38 VAL n 1 39 GLY n 1 40 GLU n 1 41 LYS n 1 42 ILE n 1 43 PHE n 1 44 LYS n 1 45 THR n 1 46 GLY n 1 47 GLY n 1 48 PHE n 1 49 GLU n 1 50 LYS n 1 51 THR n 1 52 PHE n 1 53 GLN n 1 54 ASP n 1 55 ALA n 1 56 GLN n 1 57 GLN n 1 58 VAL n 1 59 CYS n 1 60 THR n 1 61 GLN n 1 62 ALA n 1 63 GLY n 1 64 GLY n 1 65 GLN n 1 66 MET n 1 67 ALA n 1 68 SER n 1 69 PRO n 1 70 ARG n 1 71 SER n 1 72 GLU n 1 73 THR n 1 74 GLU n 1 75 ASN n 1 76 GLU n 1 77 ALA n 1 78 LEU n 1 79 SER n 1 80 GLN n 1 81 LEU n 1 82 VAL n 1 83 THR n 1 84 ALA n 1 85 GLN n 1 86 ASN n 1 87 LYS n 1 88 ALA n 1 89 ALA n 1 90 PHE n 1 91 LEU n 1 92 SER n 1 93 MET n 1 94 THR n 1 95 ASP n 1 96 ILE n 1 97 LYS n 1 98 THR n 1 99 GLU n 1 100 GLY n 1 101 ASN n 1 102 PHE n 1 103 THR n 1 104 TYR n 1 105 PRO n 1 106 THR n 1 107 GLY n 1 108 GLU n 1 109 PRO n 1 110 LEU n 1 111 VAL n 1 112 TYR n 1 113 ALA n 1 114 ASN n 1 115 TRP n 1 116 ALA n 1 117 PRO n 1 118 GLY n 1 119 GLU n 1 120 PRO n 1 121 ASN n 1 122 ASN n 1 123 ASN n 1 124 GLY n 1 125 GLY n 1 126 SER n 1 127 SER n 1 128 GLY n 1 129 ALA n 1 130 GLU n 1 131 ASN n 1 132 CYS n 1 133 VAL n 1 134 GLU n 1 135 ILE n 1 136 PHE n 1 137 PRO n 1 138 ASN n 1 139 GLY n 1 140 LYS n 1 141 TRP n 1 142 ASN n 1 143 ASP n 1 144 LYS n 1 145 ALA n 1 146 CYS n 1 147 GLY n 1 148 GLU n 1 149 LEU n 1 150 ARG n 1 151 LEU n 1 152 VAL n 1 153 ILE n 1 154 CYS n 1 155 GLU n 1 156 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 156 _entity_src_gen.gene_src_common_name Pig _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SFTPD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sus scrofa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9823 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293E _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SFTPD_PIG _struct_ref.pdbx_db_accession Q9N1X4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKTFQDAQQVCTQAGGQMASPRSETENEALSQ LVTAQNKAAFLSMTDIKTEGNFTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRLVICEF ; _struct_ref.pdbx_align_begin 223 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6BBE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 156 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9N1X4 _struct_ref_seq.db_align_beg 223 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 378 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 203 _struct_ref_seq.pdbx_auth_seq_align_end 358 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PG non-polymer . '2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL' ? 'C11 H24 O6' 252.305 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BBE _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystallized in hanging drops by mixing 5 ul protein with 5 ul reservoir solution (0.1 M 2-[bis(2-hydroxyethyl)-amino]-2-(hydroxymethyl)propane-1,3-diol, pH 6.5, 0.2 M MgCl2, 15% glycerol, and 22%-20% PEG 3350) ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-06-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU RU300' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 34.170 _reflns.entry_id 6BBE _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 15.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12220 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.500 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.640 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 79516 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.900 1.970 ? ? ? ? ? ? 1045 82.200 ? ? ? ? 0.376 ? ? ? ? ? ? ? ? 4.500 ? 1.729 ? ? ? ? ? 1 1 ? ? 1.970 2.050 ? ? ? ? ? ? 1240 99.000 ? ? ? ? 0.315 ? ? ? ? ? ? ? ? 5.800 ? 1.777 ? ? ? ? ? 2 1 ? ? 2.050 2.140 ? ? ? ? ? ? 1269 100.000 ? ? ? ? 0.288 ? ? ? ? ? ? ? ? 6.800 ? 1.824 ? ? ? ? ? 3 1 ? ? 2.140 2.250 ? ? ? ? ? ? 1261 99.800 ? ? ? ? 0.223 ? ? ? ? ? ? ? ? 7.000 ? 1.814 ? ? ? ? ? 4 1 ? ? 2.250 2.390 ? ? ? ? ? ? 1273 100.000 ? ? ? ? 0.165 ? ? ? ? ? ? ? ? 7.000 ? 1.726 ? ? ? ? ? 5 1 ? ? 2.390 2.580 ? ? ? ? ? ? 1268 100.000 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 7.100 ? 1.567 ? ? ? ? ? 6 1 ? ? 2.580 2.830 ? ? ? ? ? ? 1271 99.900 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? 7.100 ? 1.596 ? ? ? ? ? 7 1 ? ? 2.830 3.240 ? ? ? ? ? ? 1241 98.000 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 6.900 ? 1.584 ? ? ? ? ? 8 1 ? ? 3.240 4.070 ? ? ? ? ? ? 1206 93.600 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 6.400 ? 1.475 ? ? ? ? ? 9 1 ? ? 4.071 15.000 ? ? ? ? ? ? 1146 87.400 ? ? ? ? 0.037 ? ? ? ? ? ? ? ? 6.100 ? 1.289 ? ? ? ? ? 10 1 ? ? # _refine.entry_id 6BBE _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.8980 _refine.ls_d_res_low 14.6990 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 91.5100 _refine.ls_number_reflns_obs 11637 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2259 _refine.ls_R_factor_R_work 0.2232 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2501 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.1700 _refine.ls_number_reflns_R_free 1184 _refine.ls_number_reflns_R_work 10453 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 47.4500 _refine.solvent_model_param_bsol 54.2370 _refine.solvent_model_param_ksol 0.3890 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 9.4814 _refine.aniso_B[2][2] 9.4814 _refine.aniso_B[3][3] -18.9627 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 0.9000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.6000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7634 _refine.B_iso_max 150.730 _refine.B_iso_min 28.130 _refine.pdbx_overall_phase_error 29.9800 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8980 _refine_hist.d_res_low 14.6990 _refine_hist.pdbx_number_atoms_ligand 108 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1368 _refine_hist.pdbx_number_residues_total 155 _refine_hist.pdbx_B_iso_mean_ligand 66.50 _refine_hist.pdbx_B_iso_mean_solvent 50.01 _refine_hist.pdbx_number_atoms_protein 1193 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 ? 1367 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.805 ? 1867 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.051 ? 210 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 232 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 26.386 ? 546 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8979 1.9841 . . 134 1044 75.0000 . . . 0.3776 0.0000 0.3106 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9841 2.0884 . . 142 1309 92.0000 . . . 0.2891 0.0000 0.2430 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0884 2.2188 . . 146 1346 95.0000 . . . 0.2622 0.0000 0.2310 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2188 2.3895 . . 152 1368 96.0000 . . . 0.2501 0.0000 0.2380 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3895 2.6287 . . 156 1352 95.0000 . . . 0.2847 0.0000 0.2273 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6287 3.0063 . . 157 1390 97.0000 . . . 0.2817 0.0000 0.2269 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0063 3.7769 . . 155 1363 96.0000 . . . 0.2404 0.0000 0.2275 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7769 15.0 . . 142 1281 88.0000 . . . 0.2176 0.0000 0.2044 . . . . . . . . . . # _struct.entry_id 6BBE _struct.title 'Structure of N-glycosylated porcine surfactant protein-D' _struct.pdbx_descriptor 'Pulmonary surfactant-associated protein D' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BBE _struct_keywords.text 'innate immunity, surfactant, N-linked glycan, C-type lectin, SURFACTANT PROTEIN' _struct_keywords.pdbx_keywords 'SURFACTANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 2 ? PHE A 32 ? ILE A 204 PHE A 234 1 ? 31 HELX_P HELX_P2 AA2 THR A 51 ? ALA A 62 ? THR A 253 ALA A 264 1 ? 12 HELX_P HELX_P3 AA3 SER A 71 ? ASN A 86 ? SER A 273 ASN A 288 1 ? 16 HELX_P HELX_P4 AA4 GLY A 124 ? GLY A 128 ? GLY A 326 GLY A 330 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 154 SG ? ? A CYS 261 A CYS 356 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 132 SG ? ? ? 1_555 A CYS 146 SG ? ? A CYS 334 A CYS 348 1_555 ? ? ? ? ? ? ? 2.037 ? ? covale1 covale one ? A ASN 101 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 303 B NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale4 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale5 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 6 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale6 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 4 B NAG 5 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale7 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 6 B NAG 7 1_555 ? ? ? ? ? ? ? 1.435 ? ? metalc1 metalc ? ? A ASP 95 OD1 ? ? ? 1_555 D CA . CA ? ? A ASP 297 A CA 402 1_555 ? ? ? ? ? ? ? 2.558 ? ? metalc2 metalc ? ? A ASP 95 OD2 ? ? ? 1_555 D CA . CA ? ? A ASP 297 A CA 402 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc3 metalc ? ? A GLU 99 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 301 A CA 402 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc4 metalc ? ? A GLU 99 OE2 ? ? ? 1_555 D CA . CA ? ? A GLU 301 A CA 402 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc5 metalc ? ? A GLU 119 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 321 A CA 401 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc6 metalc ? ? A ASN 121 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 323 A CA 401 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc7 metalc ? ? A ASN 122 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 324 A CA 402 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc8 metalc ? ? A GLU 130 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 332 A CA 401 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc9 metalc ? ? A GLU 130 O ? ? ? 1_555 D CA . CA ? ? A GLU 332 A CA 402 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc10 metalc ? ? A ASN 131 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 333 A CA 402 1_555 ? ? ? ? ? ? ? 2.508 ? ? metalc11 metalc ? ? A ASN 142 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 344 A CA 401 1_555 ? ? ? ? ? ? ? 2.412 ? ? metalc12 metalc ? ? A ASP 143 O ? ? ? 1_555 C CA . CA ? ? A ASP 345 A CA 401 1_555 ? ? ? ? ? ? ? 2.506 ? ? metalc13 metalc ? ? A ASP 143 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 345 A CA 401 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 B MAN . O4 ? ? A CA 401 B MAN 4 5_565 ? ? ? ? ? ? ? 2.580 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 B MAN . O3 ? ? A CA 401 B MAN 4 5_565 ? ? ? ? ? ? ? 2.635 ? ? metalc16 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 402 A HOH 541 1_555 ? ? ? ? ? ? ? 2.328 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 32 A . ? PHE 234 A PRO 33 A ? PRO 235 A 1 -0.42 2 GLU 119 A . ? GLU 321 A PRO 120 A ? PRO 322 A 1 -1.57 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 35 ? VAL A 38 ? GLY A 237 VAL A 240 AA1 2 LYS A 41 ? LYS A 50 ? LYS A 243 LYS A 252 AA1 3 ARG A 150 ? PHE A 156 ? ARG A 352 PHE A 358 AA1 4 GLN A 65 ? MET A 66 ? GLN A 267 MET A 268 AA2 1 ALA A 89 ? PHE A 90 ? ALA A 291 PHE A 292 AA2 2 CYS A 132 ? ILE A 135 ? CYS A 334 ILE A 337 AA2 3 TRP A 141 ? LYS A 144 ? TRP A 343 LYS A 346 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 36 ? N ARG A 238 O PHE A 43 ? O PHE A 245 AA1 2 3 N LYS A 44 ? N LYS A 246 O CYS A 154 ? O CYS A 356 AA1 3 4 O GLU A 155 ? O GLU A 357 N GLN A 65 ? N GLN A 267 AA2 1 2 N ALA A 89 ? N ALA A 291 O ILE A 135 ? O ILE A 337 AA2 2 3 N GLU A 134 ? N GLU A 336 O ASN A 142 ? O ASN A 344 # _atom_sites.entry_id 6BBE _atom_sites.fract_transf_matrix[1][1] 0.015148 _atom_sites.fract_transf_matrix[1][2] 0.008746 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017491 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015466 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 203 ? ? ? A . n A 1 2 ILE 2 204 204 ILE ILE A . n A 1 3 THR 3 205 205 THR THR A . n A 1 4 ALA 4 206 206 ALA ALA A . n A 1 5 LEU 5 207 207 LEU LEU A . n A 1 6 ARG 6 208 208 ARG ARG A . n A 1 7 GLN 7 209 209 GLN GLN A . n A 1 8 GLN 8 210 210 GLN GLN A . n A 1 9 VAL 9 211 211 VAL VAL A . n A 1 10 GLU 10 212 212 GLU GLU A . n A 1 11 THR 11 213 213 THR THR A . n A 1 12 LEU 12 214 214 LEU LEU A . n A 1 13 GLN 13 215 215 GLN GLN A . n A 1 14 GLY 14 216 216 GLY GLY A . n A 1 15 GLN 15 217 217 GLN GLN A . n A 1 16 VAL 16 218 218 VAL VAL A . n A 1 17 GLN 17 219 219 GLN GLN A . n A 1 18 ARG 18 220 220 ARG ARG A . n A 1 19 LEU 19 221 221 LEU LEU A . n A 1 20 GLN 20 222 222 GLN GLN A . n A 1 21 LYS 21 223 223 LYS LYS A . n A 1 22 ALA 22 224 224 ALA ALA A . n A 1 23 PHE 23 225 225 PHE PHE A . n A 1 24 SER 24 226 226 SER SER A . n A 1 25 GLN 25 227 227 GLN GLN A . n A 1 26 TYR 26 228 228 TYR TYR A . n A 1 27 LYS 27 229 229 LYS LYS A . n A 1 28 LYS 28 230 230 LYS LYS A . n A 1 29 VAL 29 231 231 VAL VAL A . n A 1 30 GLU 30 232 232 GLU GLU A . n A 1 31 LEU 31 233 233 LEU LEU A . n A 1 32 PHE 32 234 234 PHE PHE A . n A 1 33 PRO 33 235 235 PRO PRO A . n A 1 34 ASN 34 236 236 ASN ASN A . n A 1 35 GLY 35 237 237 GLY GLY A . n A 1 36 ARG 36 238 238 ARG ARG A . n A 1 37 GLY 37 239 239 GLY GLY A . n A 1 38 VAL 38 240 240 VAL VAL A . n A 1 39 GLY 39 241 241 GLY GLY A . n A 1 40 GLU 40 242 242 GLU GLU A . n A 1 41 LYS 41 243 243 LYS LYS A . n A 1 42 ILE 42 244 244 ILE ILE A . n A 1 43 PHE 43 245 245 PHE PHE A . n A 1 44 LYS 44 246 246 LYS LYS A . n A 1 45 THR 45 247 247 THR THR A . n A 1 46 GLY 46 248 248 GLY GLY A . n A 1 47 GLY 47 249 249 GLY GLY A . n A 1 48 PHE 48 250 250 PHE PHE A . n A 1 49 GLU 49 251 251 GLU GLU A . n A 1 50 LYS 50 252 252 LYS LYS A . n A 1 51 THR 51 253 253 THR THR A . n A 1 52 PHE 52 254 254 PHE PHE A . n A 1 53 GLN 53 255 255 GLN GLN A . n A 1 54 ASP 54 256 256 ASP ASP A . n A 1 55 ALA 55 257 257 ALA ALA A . n A 1 56 GLN 56 258 258 GLN GLN A . n A 1 57 GLN 57 259 259 GLN GLN A . n A 1 58 VAL 58 260 260 VAL VAL A . n A 1 59 CYS 59 261 261 CYS CYS A . n A 1 60 THR 60 262 262 THR THR A . n A 1 61 GLN 61 263 263 GLN GLN A . n A 1 62 ALA 62 264 264 ALA ALA A . n A 1 63 GLY 63 265 265 GLY GLY A . n A 1 64 GLY 64 266 266 GLY GLY A . n A 1 65 GLN 65 267 267 GLN GLN A . n A 1 66 MET 66 268 268 MET MET A . n A 1 67 ALA 67 269 269 ALA ALA A . n A 1 68 SER 68 270 270 SER SER A . n A 1 69 PRO 69 271 271 PRO PRO A . n A 1 70 ARG 70 272 272 ARG ARG A . n A 1 71 SER 71 273 273 SER SER A . n A 1 72 GLU 72 274 274 GLU GLU A . n A 1 73 THR 73 275 275 THR THR A . n A 1 74 GLU 74 276 276 GLU GLU A . n A 1 75 ASN 75 277 277 ASN ASN A . n A 1 76 GLU 76 278 278 GLU GLU A . n A 1 77 ALA 77 279 279 ALA ALA A . n A 1 78 LEU 78 280 280 LEU LEU A . n A 1 79 SER 79 281 281 SER SER A . n A 1 80 GLN 80 282 282 GLN GLN A . n A 1 81 LEU 81 283 283 LEU LEU A . n A 1 82 VAL 82 284 284 VAL VAL A . n A 1 83 THR 83 285 285 THR THR A . n A 1 84 ALA 84 286 286 ALA ALA A . n A 1 85 GLN 85 287 287 GLN GLN A . n A 1 86 ASN 86 288 288 ASN ASN A . n A 1 87 LYS 87 289 289 LYS LYS A . n A 1 88 ALA 88 290 290 ALA ALA A . n A 1 89 ALA 89 291 291 ALA ALA A . n A 1 90 PHE 90 292 292 PHE PHE A . n A 1 91 LEU 91 293 293 LEU LEU A . n A 1 92 SER 92 294 294 SER SER A . n A 1 93 MET 93 295 295 MET MET A . n A 1 94 THR 94 296 296 THR THR A . n A 1 95 ASP 95 297 297 ASP ASP A . n A 1 96 ILE 96 298 298 ILE ILE A . n A 1 97 LYS 97 299 299 LYS LYS A . n A 1 98 THR 98 300 300 THR THR A . n A 1 99 GLU 99 301 301 GLU GLU A . n A 1 100 GLY 100 302 302 GLY GLY A . n A 1 101 ASN 101 303 303 ASN ASN A . n A 1 102 PHE 102 304 304 PHE PHE A . n A 1 103 THR 103 305 305 THR THR A . n A 1 104 TYR 104 306 306 TYR TYR A . n A 1 105 PRO 105 307 307 PRO PRO A . n A 1 106 THR 106 308 308 THR THR A . n A 1 107 GLY 107 309 309 GLY GLY A . n A 1 108 GLU 108 310 310 GLU GLU A . n A 1 109 PRO 109 311 311 PRO PRO A . n A 1 110 LEU 110 312 312 LEU LEU A . n A 1 111 VAL 111 313 313 VAL VAL A . n A 1 112 TYR 112 314 314 TYR TYR A . n A 1 113 ALA 113 315 315 ALA ALA A . n A 1 114 ASN 114 316 316 ASN ASN A . n A 1 115 TRP 115 317 317 TRP TRP A . n A 1 116 ALA 116 318 318 ALA ALA A . n A 1 117 PRO 117 319 319 PRO PRO A . n A 1 118 GLY 118 320 320 GLY GLY A . n A 1 119 GLU 119 321 321 GLU GLU A . n A 1 120 PRO 120 322 322 PRO PRO A . n A 1 121 ASN 121 323 323 ASN ASN A . n A 1 122 ASN 122 324 324 ASN ASN A . n A 1 123 ASN 123 325 325 ASN ASN A . n A 1 124 GLY 124 326 326 GLY GLY A . n A 1 125 GLY 125 327 327 GLY GLY A . n A 1 126 SER 126 328 328 SER SER A . n A 1 127 SER 127 329 329 SER SER A . n A 1 128 GLY 128 330 330 GLY GLY A . n A 1 129 ALA 129 331 331 ALA ALA A . n A 1 130 GLU 130 332 332 GLU GLU A . n A 1 131 ASN 131 333 333 ASN ASN A . n A 1 132 CYS 132 334 334 CYS CYS A . n A 1 133 VAL 133 335 335 VAL VAL A . n A 1 134 GLU 134 336 336 GLU GLU A . n A 1 135 ILE 135 337 337 ILE ILE A . n A 1 136 PHE 136 338 338 PHE PHE A . n A 1 137 PRO 137 339 339 PRO PRO A . n A 1 138 ASN 138 340 340 ASN ASN A . n A 1 139 GLY 139 341 341 GLY GLY A . n A 1 140 LYS 140 342 342 LYS LYS A . n A 1 141 TRP 141 343 343 TRP TRP A . n A 1 142 ASN 142 344 344 ASN ASN A . n A 1 143 ASP 143 345 345 ASP ASP A . n A 1 144 LYS 144 346 346 LYS LYS A . n A 1 145 ALA 145 347 347 ALA ALA A . n A 1 146 CYS 146 348 348 CYS CYS A . n A 1 147 GLY 147 349 349 GLY GLY A . n A 1 148 GLU 148 350 350 GLU GLU A . n A 1 149 LEU 149 351 351 LEU LEU A . n A 1 150 ARG 150 352 352 ARG ARG A . n A 1 151 LEU 151 353 353 LEU LEU A . n A 1 152 VAL 152 354 354 VAL VAL A . n A 1 153 ILE 153 355 355 ILE ILE A . n A 1 154 CYS 154 356 356 CYS CYS A . n A 1 155 GLU 155 357 357 GLU GLU A . n A 1 156 PHE 156 358 358 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 401 401 CA CA A . D 3 CA 1 402 402 CA CA A . E 4 1PG 1 410 600 1PG 05P A . F 5 HOH 1 501 70 HOH HOH A . F 5 HOH 2 502 75 HOH HOH A . F 5 HOH 3 503 59 HOH HOH A . F 5 HOH 4 504 48 HOH HOH A . F 5 HOH 5 505 80 HOH HOH A . F 5 HOH 6 506 11 HOH HOH A . F 5 HOH 7 507 55 HOH HOH A . F 5 HOH 8 508 4 HOH HOH A . F 5 HOH 9 509 27 HOH HOH A . F 5 HOH 10 510 82 HOH HOH A . F 5 HOH 11 511 20 HOH HOH A . F 5 HOH 12 512 53 HOH HOH A . F 5 HOH 13 513 26 HOH HOH A . F 5 HOH 14 514 6 HOH HOH A . F 5 HOH 15 515 10 HOH HOH A . F 5 HOH 16 516 71 HOH HOH A . F 5 HOH 17 517 77 HOH HOH A . F 5 HOH 18 518 60 HOH HOH A . F 5 HOH 19 519 33 HOH HOH A . F 5 HOH 20 520 81 HOH HOH A . F 5 HOH 21 521 8 HOH HOH A . F 5 HOH 22 522 9 HOH HOH A . F 5 HOH 23 523 79 HOH HOH A . F 5 HOH 24 524 69 HOH HOH A . F 5 HOH 25 525 7 HOH HOH A . F 5 HOH 26 526 35 HOH HOH A . F 5 HOH 27 527 42 HOH HOH A . F 5 HOH 28 528 3 HOH HOH A . F 5 HOH 29 529 38 HOH HOH A . F 5 HOH 30 530 22 HOH HOH A . F 5 HOH 31 531 2 HOH HOH A . F 5 HOH 32 532 31 HOH HOH A . F 5 HOH 33 533 74 HOH HOH A . F 5 HOH 34 534 66 HOH HOH A . F 5 HOH 35 535 16 HOH HOH A . F 5 HOH 36 536 37 HOH HOH A . F 5 HOH 37 537 63 HOH HOH A . F 5 HOH 38 538 54 HOH HOH A . F 5 HOH 39 539 12 HOH HOH A . F 5 HOH 40 540 86 HOH HOH A . F 5 HOH 41 541 49 HOH HOH A . F 5 HOH 42 542 85 HOH HOH A . F 5 HOH 43 543 24 HOH HOH A . F 5 HOH 44 544 67 HOH HOH A . F 5 HOH 45 545 1 HOH HOH A . F 5 HOH 46 546 32 HOH HOH A . F 5 HOH 47 547 76 HOH HOH A . F 5 HOH 48 548 68 HOH HOH A . F 5 HOH 49 549 21 HOH HOH A . F 5 HOH 50 550 65 HOH HOH A . F 5 HOH 51 551 61 HOH HOH A . F 5 HOH 52 552 44 HOH HOH A . F 5 HOH 53 553 23 HOH HOH A . F 5 HOH 54 554 34 HOH HOH A . F 5 HOH 55 555 83 HOH HOH A . F 5 HOH 56 556 56 HOH HOH A . F 5 HOH 57 557 57 HOH HOH A . F 5 HOH 58 558 41 HOH HOH A . F 5 HOH 59 559 18 HOH HOH A . F 5 HOH 60 560 14 HOH HOH A . F 5 HOH 61 561 64 HOH HOH A . F 5 HOH 62 562 73 HOH HOH A . F 5 HOH 63 563 84 HOH HOH A . F 5 HOH 64 564 62 HOH HOH A . F 5 HOH 65 565 50 HOH HOH A . F 5 HOH 66 566 29 HOH HOH A . F 5 HOH 67 567 78 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12530 ? 1 MORE -14 ? 1 'SSA (A^2)' 23660 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 33.0075000000 0.8660254038 -0.5000000000 0.0000000000 57.1706670308 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -33.0075000000 -0.8660254038 -0.5000000000 0.0000000000 57.1706670308 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 52.0 ? 2 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 89.4 ? 3 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 68.1 ? 4 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 122.0 ? 5 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 73.5 ? 6 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 48.8 ? 7 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 155.9 ? 8 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 143.2 ? 9 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 84.7 ? 10 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 69.9 ? 11 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A GLU 130 ? A GLU 332 ? 1_555 96.5 ? 12 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A GLU 130 ? A GLU 332 ? 1_555 135.1 ? 13 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A GLU 130 ? A GLU 332 ? 1_555 152.6 ? 14 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A GLU 130 ? A GLU 332 ? 1_555 139.9 ? 15 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? A GLU 130 ? A GLU 332 ? 1_555 79.0 ? 16 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 72.8 ? 17 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 111.7 ? 18 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 75.3 ? 19 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 118.4 ? 20 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 83.1 ? 21 O ? A GLU 130 ? A GLU 332 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 80.9 ? 22 OD1 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 107.3 ? 23 OD2 ? A ASP 95 ? A ASP 297 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 84.2 ? 24 OE1 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 128.2 ? 25 OE2 ? A GLU 99 ? A GLU 301 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 82.3 ? 26 OD1 ? A ASN 122 ? A ASN 324 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 94.6 ? 27 O ? A GLU 130 ? A GLU 332 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 75.5 ? 28 OD1 ? A ASN 131 ? A ASN 333 ? 1_555 CA ? D CA . ? A CA 402 ? 1_555 O ? F HOH . ? A HOH 541 ? 1_555 156.2 ? 29 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 72.6 ? 30 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 152.1 ? 31 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 83.8 ? 32 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 64.9 ? 33 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 135.9 ? 34 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 140.3 ? 35 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A ASP 143 ? A ASP 345 ? 1_555 123.3 ? 36 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A ASP 143 ? A ASP 345 ? 1_555 142.7 ? 37 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A ASP 143 ? A ASP 345 ? 1_555 69.0 ? 38 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O ? A ASP 143 ? A ASP 345 ? 1_555 75.1 ? 39 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 68.3 ? 40 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 82.6 ? 41 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 94.7 ? 42 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 91.9 ? 43 O ? A ASP 143 ? A ASP 345 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 75.0 ? 44 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O4 ? B MAN . ? B MAN 4 ? 5_565 131.5 ? 45 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O4 ? B MAN . ? B MAN 4 ? 5_565 119.2 ? 46 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O4 ? B MAN . ? B MAN 4 ? 5_565 73.0 ? 47 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O4 ? B MAN . ? B MAN 4 ? 5_565 83.3 ? 48 O ? A ASP 143 ? A ASP 345 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O4 ? B MAN . ? B MAN 4 ? 5_565 77.6 ? 49 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O4 ? B MAN . ? B MAN 4 ? 5_565 152.5 ? 50 OE1 ? A GLU 119 ? A GLU 321 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 73.4 ? 51 OD1 ? A ASN 121 ? A ASN 323 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 76.1 ? 52 OE1 ? A GLU 130 ? A GLU 332 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 115.6 ? 53 OD1 ? A ASN 142 ? A ASN 344 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 81.1 ? 54 O ? A ASP 143 ? A ASP 345 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 138.3 ? 55 OD1 ? A ASP 143 ? A ASP 345 ? 1_555 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 140.2 ? 56 O4 ? B MAN . ? B MAN 4 ? 5_565 CA ? C CA . ? A CA 401 ? 1_555 O3 ? B MAN . ? B MAN 4 ? 5_565 65.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-05-30 3 'Structure model' 1 2 2018-07-18 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2021-03-24 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Source and taxonomy' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' atom_site 6 4 'Structure model' atom_site_anisotrop 7 4 'Structure model' chem_comp 8 4 'Structure model' entity 9 4 'Structure model' pdbx_branch_scheme 10 4 'Structure model' pdbx_chem_comp_identifier 11 4 'Structure model' pdbx_entity_branch 12 4 'Structure model' pdbx_entity_branch_descriptor 13 4 'Structure model' pdbx_entity_branch_link 14 4 'Structure model' pdbx_entity_branch_list 15 4 'Structure model' pdbx_entity_nonpoly 16 4 'Structure model' pdbx_nonpoly_scheme 17 4 'Structure model' pdbx_struct_assembly_gen 18 4 'Structure model' pdbx_struct_conn_angle 19 4 'Structure model' struct_asym 20 4 'Structure model' struct_conn 21 4 'Structure model' struct_conn_type 22 4 'Structure model' struct_site 23 4 'Structure model' struct_site_gen 24 5 'Structure model' chem_comp 25 5 'Structure model' entity_src_gen 26 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation_author.name' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation_author.name' 9 4 'Structure model' '_atom_site.B_iso_or_equiv' 10 4 'Structure model' '_atom_site.Cartn_x' 11 4 'Structure model' '_atom_site.Cartn_y' 12 4 'Structure model' '_atom_site.Cartn_z' 13 4 'Structure model' '_atom_site.auth_asym_id' 14 4 'Structure model' '_atom_site.auth_atom_id' 15 4 'Structure model' '_atom_site.auth_comp_id' 16 4 'Structure model' '_atom_site.auth_seq_id' 17 4 'Structure model' '_atom_site.label_asym_id' 18 4 'Structure model' '_atom_site.label_atom_id' 19 4 'Structure model' '_atom_site.label_comp_id' 20 4 'Structure model' '_atom_site.label_entity_id' 21 4 'Structure model' '_atom_site.occupancy' 22 4 'Structure model' '_atom_site.pdbx_formal_charge' 23 4 'Structure model' '_atom_site.type_symbol' 24 4 'Structure model' '_atom_site_anisotrop.id' 25 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 26 4 'Structure model' '_chem_comp.name' 27 4 'Structure model' '_chem_comp.type' 28 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 34 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 35 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 36 4 'Structure model' '_struct_conn.conn_type_id' 37 4 'Structure model' '_struct_conn.id' 38 4 'Structure model' '_struct_conn.pdbx_dist_value' 39 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 40 4 'Structure model' '_struct_conn.pdbx_role' 41 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 42 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 43 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 44 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 45 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 46 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 47 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 48 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 49 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 50 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 51 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 52 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 53 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 54 4 'Structure model' '_struct_conn.ptnr2_symmetry' 55 4 'Structure model' '_struct_conn_type.id' 56 5 'Structure model' '_chem_comp.pdbx_synonyms' 57 5 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 58 5 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 59 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 307 ? ? -69.82 17.47 2 1 ASN A 316 ? ? -140.31 50.01 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 203 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # _pdbx_audit_support.funding_organization 'Open Technology Program Grant' _pdbx_audit_support.country Netherlands _pdbx_audit_support.grant_number 10388 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 500 n B 2 NAG 2 B NAG 2 A NAG 510 n B 2 BMA 3 B BMA 3 A BMA 520 n B 2 MAN 4 B MAN 4 A MAN 531 n B 2 NAG 5 B NAG 5 A NAG 541 n B 2 MAN 6 B MAN 6 A MAN 532 n B 2 NAG 7 B NAG 7 A NAG 542 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-3-1/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1' WURCS PDB2Glycan 1.1.0 3 2 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}}}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 2 6 MAN C1 O1 3 BMA O6 HO6 sing ? 6 2 7 NAG C1 O1 6 MAN O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 NAG 5 n 2 MAN 6 n 2 NAG 7 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 '2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL' 1PG 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #