HEADER HYDROLASE/DNA 22-OCT-17 6BDA TITLE WILD-TYPE I-ONUI BOUND TO A3G SUBSTRATE (POST-CLEAVAGE COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN 3/HOMING ENDONUCLEASE-LIKE PROTEIN COMPND 3 FUSION; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CLEAVED COGNATE DNA STRAND, +11 SENSE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CLEAVED COGNATE DNA STRAND, -11 SENSE; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: CLEAVED COGNATE DNA STRAND, -11 ANTISENSE; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: CLEAVED COGNATE DNA STRAND, +11 ANTISENSE; COMPND 20 CHAIN: E; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI SUBSP. AMERICANA; SOURCE 3 ORGANISM_TAXID: 170178; SOURCE 4 GENE: HEG FUSION, RPS3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI; SOURCE 10 ORGANISM_TAXID: 42373; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI; SOURCE 14 ORGANISM_TAXID: 42373; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI; SOURCE 18 ORGANISM_TAXID: 42373; SOURCE 19 MOL_ID: 5; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI; SOURCE 22 ORGANISM_TAXID: 42373 KEYWDS NUCLEIC ACID, HYDROLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.BROWN,K.ZHANG,M.LAFORET,T.MCMURROUGH,G.B.GLOOR,D.R.EDGELL,M.JUNOP REVDAT 2 13-MAR-24 6BDA 1 LINK REVDAT 1 24-OCT-18 6BDA 0 JRNL AUTH M.LAFORET,T.MCMURROUGH,C.BROWN,K.ZHANG,M.JUNOP,G.B.GLOOR, JRNL AUTH 2 D.R.EDGELL JRNL TITL WILD-TYPE I-ONUI BOUND TO A3G SUBSTRATE (POST-CLEAVAGE JRNL TITL 2 COMPLEX) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2861 - 4.5292 1.00 2895 160 0.1489 0.2069 REMARK 3 2 4.5292 - 3.5956 1.00 2779 138 0.1509 0.2117 REMARK 3 3 3.5956 - 3.1413 0.99 2701 136 0.1716 0.1571 REMARK 3 4 3.1413 - 2.8542 1.00 2725 140 0.2064 0.2519 REMARK 3 5 2.8542 - 2.6496 1.00 2693 146 0.2187 0.2809 REMARK 3 6 2.6496 - 2.4934 1.00 2700 126 0.2124 0.2652 REMARK 3 7 2.4934 - 2.3686 1.00 2660 154 0.2120 0.2559 REMARK 3 8 2.3686 - 2.2655 1.00 2671 138 0.2143 0.2626 REMARK 3 9 2.2655 - 2.1783 1.00 2674 142 0.2140 0.2440 REMARK 3 10 2.1783 - 2.1031 1.00 2667 133 0.2176 0.2461 REMARK 3 11 2.1031 - 2.0374 1.00 2630 140 0.2442 0.2844 REMARK 3 12 2.0374 - 1.9791 1.00 2661 143 0.2472 0.2902 REMARK 3 13 1.9791 - 1.9270 1.00 2635 144 0.2674 0.3218 REMARK 3 14 1.9270 - 1.8800 1.00 2652 138 0.2831 0.2854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3554 REMARK 3 ANGLE : 0.810 5003 REMARK 3 CHIRALITY : 0.032 566 REMARK 3 PLANARITY : 0.003 454 REMARK 3 DIHEDRAL : 21.551 1382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 68.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM FORMATE 20% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.34500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.34500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 MET A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 PHE A 148 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 155 OG REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 303 C PHE A 303 O 0.158 REMARK 500 PHE A 303 C PHE A 303 OXT 0.235 REMARK 500 DG C 15 P DG C 15 OP3 -0.126 REMARK 500 DA E 16 P DA E 16 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 303 CA - C - O ANGL. DEV. = -19.3 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 -116.93 53.59 REMARK 500 SER A 230 -119.98 55.39 REMARK 500 ASN A 298 -122.88 49.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 826 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 6.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 178 OE1 94.1 REMARK 620 3 HOH A 544 O 89.4 88.9 REMARK 620 4 DC B 14 OP1 176.3 88.5 93.3 REMARK 620 5 HOH D 109 O 83.8 92.0 173.2 93.5 REMARK 620 6 DA E 16 OP2 88.4 174.9 95.6 88.9 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 90.4 REMARK 620 3 HOH A 541 O 85.2 74.5 REMARK 620 4 DG C 15 OP3 170.4 90.2 85.8 REMARK 620 5 HOH C 207 O 89.2 95.7 168.7 100.2 REMARK 620 6 DT D 15 OP1 88.2 175.3 100.8 90.5 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 719 O REMARK 620 2 DG C 15 OP1 99.2 REMARK 620 3 DA C 16 OP1 150.3 94.7 REMARK 620 4 HOH C 214 O 75.7 102.4 75.7 REMARK 620 5 HOH C 223 O 102.2 75.6 106.7 176.9 REMARK 620 6 HOH C 233 O 81.3 163.0 92.9 94.2 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT B 12 O2 REMARK 620 2 DT B 13 O4' 98.7 REMARK 620 3 HOH B 211 O 108.1 77.2 REMARK 620 4 HOH B 217 O 80.1 88.6 164.4 REMARK 620 5 DT D 15 O2 96.3 163.3 91.4 101.1 REMARK 620 6 HOH E 110 O 163.0 89.4 88.2 85.2 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT B 13 O3' REMARK 620 2 HOH B 211 O 95.0 REMARK 620 3 DT D 15 O3' 158.9 98.5 REMARK 620 4 HOH D 109 O 105.0 112.2 54.8 REMARK 620 5 DA E 16 OP2 87.5 175.0 77.9 62.9 REMARK 620 6 HOH E 110 O 107.4 74.9 91.7 146.1 108.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 15 OP3 REMARK 620 2 HOH C 226 O 111.2 REMARK 620 3 HOH D 122 O 164.3 83.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 102 DBREF 6BDA A 1 303 UNP Q4VWW5 Q4VWW5_OPHNO 413 715 DBREF 6BDA B 1 14 PDB 6BDA 6BDA 1 14 DBREF 6BDA C 15 25 PDB 6BDA 6BDA 15 25 DBREF 6BDA D 1 15 PDB 6BDA 6BDA 1 15 DBREF 6BDA E 16 25 PDB 6BDA 6BDA 16 25 SEQADV 6BDA GLY A -3 UNP Q4VWW5 EXPRESSION TAG SEQADV 6BDA PRO A -2 UNP Q4VWW5 EXPRESSION TAG SEQADV 6BDA LEU A -1 UNP Q4VWW5 EXPRESSION TAG SEQADV 6BDA GLY A 0 UNP Q4VWW5 EXPRESSION TAG SEQADV 6BDA PHE A 148 UNP Q4VWW5 LYS 560 CONFLICT SEQRES 1 A 307 GLY PRO LEU GLY SER ALA TYR MET SER ARG ARG GLU SER SEQRES 2 A 307 ILE ASN PRO TRP ILE LEU THR GLY PHE ALA ASP ALA GLU SEQRES 3 A 307 GLY SER PHE LEU LEU ARG ILE ARG ASN ASN ASN LYS SER SEQRES 4 A 307 SER VAL GLY TYR SER THR GLU LEU GLY PHE GLN ILE THR SEQRES 5 A 307 LEU HIS ASN LYS ASP LYS SER ILE LEU GLU ASN ILE GLN SEQRES 6 A 307 SER THR TRP LYS VAL GLY VAL ILE ALA ASN SER GLY ASP SEQRES 7 A 307 ASN ALA VAL SER LEU LYS VAL THR ARG PHE GLU ASP LEU SEQRES 8 A 307 LYS VAL ILE ILE ASP HIS PHE GLU LYS TYR PRO LEU ILE SEQRES 9 A 307 THR GLN LYS LEU GLY ASP TYR MET LEU PHE LYS GLN ALA SEQRES 10 A 307 PHE CYS VAL MET GLU ASN LYS GLU HIS LEU LYS ILE ASN SEQRES 11 A 307 GLY ILE LYS GLU LEU VAL ARG ILE LYS ALA LYS LEU ASN SEQRES 12 A 307 TRP GLY LEU THR ASP GLU LEU LYS PHE ALA PHE PRO GLU SEQRES 13 A 307 ILE ILE SER LYS GLU ARG SER LEU ILE ASN LYS ASN ILE SEQRES 14 A 307 PRO ASN PHE LYS TRP LEU ALA GLY PHE THR SER GLY GLU SEQRES 15 A 307 GLY CYS PHE PHE VAL ASN LEU ILE LYS SER LYS SER LYS SEQRES 16 A 307 LEU GLY VAL GLN VAL GLN LEU VAL PHE SER ILE THR GLN SEQRES 17 A 307 HIS ILE LYS ASP LYS ASN LEU MET ASN SER LEU ILE THR SEQRES 18 A 307 TYR LEU GLY CYS GLY TYR ILE LYS GLU LYS ASN LYS SER SEQRES 19 A 307 GLU PHE SER TRP LEU ASP PHE VAL VAL THR LYS PHE SER SEQRES 20 A 307 ASP ILE ASN ASP LYS ILE ILE PRO VAL PHE GLN GLU ASN SEQRES 21 A 307 THR LEU ILE GLY VAL LYS LEU GLU ASP PHE GLU ASP TRP SEQRES 22 A 307 CYS LYS VAL ALA LYS LEU ILE GLU GLU LYS LYS HIS LEU SEQRES 23 A 307 THR GLU SER GLY LEU ASP GLU ILE LYS LYS ILE LYS LEU SEQRES 24 A 307 ASN MET ASN LYS GLY ARG VAL PHE SEQRES 1 B 14 DC DT DT DT DC DC DA DC DT DT DA DT DT SEQRES 2 B 14 DC SEQRES 1 C 11 DG DA DC DC DT DT DT DT DA DC DC SEQRES 1 D 15 DG DG DT DA DA DA DA DG DG DT DC DG DA SEQRES 2 D 15 DA DT SEQRES 1 E 10 DA DA DG DT DG DG DA DA DA DG HET MG A 401 1 HET MG A 402 1 HET MG B 101 1 HET MG B 102 1 HET MG C 101 1 HET MG C 102 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG 6(MG 2+) FORMUL 12 HOH *470(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 ASP A 53 LYS A 65 1 13 HELIX 3 AA3 ARG A 83 GLU A 85 5 3 HELIX 4 AA4 ASP A 86 TYR A 97 1 12 HELIX 5 AA5 GLN A 102 ASN A 119 1 18 HELIX 6 AA6 LYS A 120 LEU A 123 5 4 HELIX 7 AA7 LYS A 124 ALA A 136 1 13 HELIX 8 AA8 THR A 143 PHE A 150 1 8 HELIX 9 AA9 ASN A 167 GLU A 178 1 12 HELIX 10 AB1 ASP A 208 GLY A 220 1 13 HELIX 11 AB2 LYS A 241 LYS A 248 1 8 HELIX 12 AB3 LYS A 248 ASN A 256 1 9 HELIX 13 AB4 VAL A 261 GLU A 278 1 18 HELIX 14 AB5 LYS A 279 LEU A 282 5 4 HELIX 15 AB6 THR A 283 MET A 297 1 15 HELIX 16 AB7 ASN A 298 ARG A 301 5 4 SHEET 1 AA1 4 GLY A 23 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 HIS A 50 -1 O GLU A 42 N ARG A 28 SHEET 3 AA1 4 ALA A 76 VAL A 81 -1 O VAL A 77 N LEU A 49 SHEET 4 AA1 4 VAL A 68 ASN A 71 -1 N VAL A 68 O LYS A 80 SHEET 1 AA2 4 GLY A 179 LYS A 187 0 SHEET 2 AA2 4 VAL A 194 HIS A 205 -1 O GLN A 195 N ILE A 186 SHEET 3 AA2 4 PHE A 232 VAL A 239 -1 O LEU A 235 N GLN A 204 SHEET 4 AA2 4 TYR A 223 LYS A 229 -1 N TYR A 223 O VAL A 238 LINK O ALA A 21 MG MG A 402 1555 1555 2.18 LINK OE2 GLU A 22 MG MG A 401 1555 1555 2.05 LINK O GLY A 177 MG MG A 401 1555 1555 2.31 LINK OE1 GLU A 178 MG MG A 402 1555 1555 2.07 LINK MG MG A 401 O HOH A 541 1555 1555 2.19 LINK MG MG A 401 OP3 DG C 15 1555 1555 2.00 LINK MG MG A 401 O HOH C 207 1555 1555 2.14 LINK MG MG A 401 OP1 DT D 15 1555 1555 2.11 LINK MG MG A 402 O HOH A 544 1555 1555 2.14 LINK MG MG A 402 OP1 DC B 14 1555 1555 2.06 LINK MG MG A 402 O HOH D 109 1555 1555 2.17 LINK MG MG A 402 OP2 DA E 16 1555 1555 2.00 LINK O HOH A 719 MG MG C 102 1555 1555 2.27 LINK O2 DT B 12 MG MG B 101 1555 1555 2.54 LINK O4' DT B 13 MG MG B 101 1555 1555 2.86 LINK O3' DT B 13 MG MG B 102 1555 1555 2.86 LINK MG MG B 101 O HOH B 211 1555 1555 2.60 LINK MG MG B 101 O HOH B 217 1555 1555 2.58 LINK MG MG B 101 O2 DT D 15 1555 1555 2.79 LINK MG MG B 101 O HOH E 110 1555 1555 2.27 LINK MG MG B 102 O HOH B 211 1555 1555 2.81 LINK MG MG B 102 O3' DT D 15 1555 1555 2.95 LINK MG MG B 102 O HOH D 109 1555 1555 2.78 LINK MG MG B 102 OP2 DA E 16 1555 1555 2.56 LINK MG MG B 102 O HOH E 110 1555 1555 2.77 LINK OP3 DG C 15 MG MG C 101 1555 1555 2.52 LINK OP1 DG C 15 MG MG C 102 1555 1555 2.17 LINK OP1 DA C 16 MG MG C 102 1555 1555 2.21 LINK MG MG C 101 O HOH C 226 1555 1555 2.72 LINK MG MG C 101 O HOH D 122 1555 1555 2.62 LINK MG MG C 102 O HOH C 214 1555 1555 2.23 LINK MG MG C 102 O HOH C 223 1555 1555 2.43 LINK MG MG C 102 O HOH C 233 1555 1555 2.27 SITE 1 AC1 7 GLU A 22 GLY A 177 HOH A 541 DG C 15 SITE 2 AC1 7 MG C 101 HOH C 207 DT D 15 SITE 1 AC2 7 ALA A 21 GLU A 178 HOH A 544 DC B 14 SITE 2 AC2 7 MG B 102 HOH D 109 DA E 16 SITE 1 AC3 6 DT B 12 DT B 13 HOH B 211 HOH B 217 SITE 2 AC3 6 DT D 15 HOH E 110 SITE 1 AC4 8 MG A 402 DT B 13 DC B 14 HOH B 211 SITE 2 AC4 8 DT D 15 HOH D 109 DA E 16 HOH E 110 SITE 1 AC5 8 MG A 401 HOH A 541 DC B 14 DG C 15 SITE 2 AC5 8 HOH C 226 DA D 14 DT D 15 HOH D 122 SITE 1 AC6 6 HOH A 719 DG C 15 DA C 16 HOH C 214 SITE 2 AC6 6 HOH C 223 HOH C 233 CRYST1 42.690 68.980 161.720 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006184 0.00000