HEADER TRANSFERASE 23-OCT-17 6BDL TITLE CRYSTAL STRUCTURE OF CGMP-DEPENDENT PROTEIN KINASE IALPHA (PKG IALPHA) TITLE 2 CATALYTIC DOMAIN IN APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CGK1,CGMP-DEPENDENT PROTEIN KINASE I,CGKI; COMPND 5 EC: 2.7.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG1, PRKG1B, PRKGR1A, PRKGR1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULORVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PBLUEBACHIS2A KEYWDS SERINE/THREONINE PROTEIN KINASES (EC 2.7.11.12), TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.QIN,B.SANKARAN,C.KIM REVDAT 3 04-OCT-23 6BDL 1 REMARK REVDAT 2 01-JAN-20 6BDL 1 REMARK REVDAT 1 24-OCT-18 6BDL 0 JRNL AUTH L.QIN,B.SANKARAN,D.CASTEEL,C.KIM JRNL TITL CRYSTAL STRUCTURE OF CGMP-DEPENDENT PROTEIN KINASE IALPHA JRNL TITL 2 (PKG IALPHA) CATALYTIC DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1073 - 4.7211 0.98 3689 148 0.1688 0.1830 REMARK 3 2 4.7211 - 3.7483 1.00 3679 147 0.1600 0.1624 REMARK 3 3 3.7483 - 3.2748 1.00 3634 144 0.1943 0.1929 REMARK 3 4 3.2748 - 2.9755 1.00 3622 147 0.2212 0.2304 REMARK 3 5 2.9755 - 2.7623 1.00 3637 144 0.2250 0.2311 REMARK 3 6 2.7623 - 2.5995 1.00 3619 147 0.2344 0.2479 REMARK 3 7 2.5995 - 2.4693 1.00 3627 143 0.2442 0.2605 REMARK 3 8 2.4693 - 2.3619 1.00 3603 142 0.2364 0.2762 REMARK 3 9 2.3619 - 2.2710 1.00 3656 146 0.2526 0.2688 REMARK 3 10 2.2710 - 2.1926 1.00 3596 140 0.2658 0.2590 REMARK 3 11 2.1926 - 2.1241 1.00 3597 136 0.2555 0.2824 REMARK 3 12 2.1241 - 2.0633 1.00 3653 145 0.2638 0.3134 REMARK 3 13 2.0633 - 2.0090 1.00 3590 138 0.2827 0.3229 REMARK 3 14 2.0090 - 1.9600 1.00 3606 150 0.2921 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5341 REMARK 3 ANGLE : 0.677 7227 REMARK 3 CHIRALITY : 0.048 779 REMARK 3 PLANARITY : 0.005 928 REMARK 3 DIHEDRAL : 19.835 1920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000229866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 38.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.12_2829 REMARK 200 STARTING MODEL: 3FJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCTP, PH6.0, 25% W/V PEG1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 876 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 325 REMARK 465 SER A 326 REMARK 465 GLY A 327 REMARK 465 LEU A 328 REMARK 465 ASP A 329 REMARK 465 ASP A 330 REMARK 465 VAL A 331 REMARK 465 SER A 332 REMARK 465 ASN A 333 REMARK 465 LYS A 334 REMARK 465 ALA A 335 REMARK 465 TYR A 336 REMARK 465 GLY B 325 REMARK 465 SER B 326 REMARK 465 GLY B 327 REMARK 465 LEU B 328 REMARK 465 ASP B 329 REMARK 465 ASP B 330 REMARK 465 VAL B 331 REMARK 465 SER B 332 REMARK 465 ASN B 333 REMARK 465 LYS B 334 REMARK 465 ALA B 335 REMARK 465 TYR B 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 344 CE NZ REMARK 470 TYR A 345 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 356 CE NZ REMARK 470 ILE A 362 CD1 REMARK 470 GLU A 382 OE1 OE2 REMARK 470 GLU A 404 CD OE1 OE2 REMARK 470 GLN A 411 OE1 NE2 REMARK 470 ARG A 462 CD NE CZ NH1 NH2 REMARK 470 ASP A 502 OD2 REMARK 470 LYS A 508 NZ REMARK 470 ILE A 509 CD1 REMARK 470 PHE A 518 CD2 CE1 CE2 CZ REMARK 470 THR A 521 OG1 CG2 REMARK 470 VAL A 525 CG1 CG2 REMARK 470 ILE A 530 CD1 REMARK 470 LEU A 531 CD1 REMARK 470 LYS A 533 CE NZ REMARK 470 PRO A 561 CG CD REMARK 470 ASP A 562 OD1 REMARK 470 MET A 564 CG SD CE REMARK 470 LYS A 565 CG CD CE NZ REMARK 470 TYR A 567 CD2 CE2 REMARK 470 ASN A 568 ND2 REMARK 470 ILE A 569 CD1 REMARK 470 LEU A 571 CD1 CD2 REMARK 470 ARG A 572 NE CZ NH1 NH2 REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 LYS A 581 CG CD CE NZ REMARK 470 LYS A 582 NZ REMARK 470 LYS A 592 CE NZ REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 ARG A 596 NE CZ NH1 NH2 REMARK 470 SER A 600 OG REMARK 470 GLU A 601 CG CD OE1 OE2 REMARK 470 LEU A 603 CD1 CD2 REMARK 470 LYS A 607 CD CE NZ REMARK 470 LYS A 611 CE NZ REMARK 470 LYS A 615 CD CE NZ REMARK 470 LYS A 617 CE NZ REMARK 470 GLU A 625 OE1 OE2 REMARK 470 LYS A 629 CE NZ REMARK 470 GLU A 654 CD OE1 OE2 REMARK 470 ILE A 669 CD1 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 LYS B 342 CE NZ REMARK 470 LYS B 344 CE NZ REMARK 470 ASN B 354 OD1 REMARK 470 LYS B 356 CE NZ REMARK 470 ILE B 362 CD1 REMARK 470 VAL B 368 CG1 REMARK 470 PHE B 371 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 382 OE1 OE2 REMARK 470 LYS B 393 CE NZ REMARK 470 ARG B 395 NE CZ NH1 NH2 REMARK 470 ARG B 401 NE CZ NH1 NH2 REMARK 470 GLU B 404 CD OE1 OE2 REMARK 470 GLN B 411 OE1 NE2 REMARK 470 GLU B 457 CD OE1 OE2 REMARK 470 ASP B 502 OD2 REMARK 470 LYS B 508 CE NZ REMARK 470 ILE B 509 CD1 REMARK 470 THR B 521 OG1 CG2 REMARK 470 PRO B 561 CG CD REMARK 470 ASP B 562 OD1 REMARK 470 MET B 564 CG SD CE REMARK 470 LYS B 565 CG CD CE NZ REMARK 470 ILE B 569 CD1 REMARK 470 GLU B 578 OE1 OE2 REMARK 470 LYS B 581 CG CD CE NZ REMARK 470 LYS B 582 NZ REMARK 470 LYS B 607 NZ REMARK 470 LYS B 611 CE NZ REMARK 470 GLU B 625 OE1 OE2 REMARK 470 LYS B 629 CE NZ REMARK 470 GLU B 654 CG CD OE1 OE2 REMARK 470 ASN B 656 OD1 ND2 REMARK 470 GLU B 658 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 877 O HOH A 889 1.87 REMARK 500 OD2 ASP A 597 O HOH A 801 1.89 REMARK 500 OD1 ASP B 338 O HOH B 801 1.90 REMARK 500 NZ LYS A 393 O HOH A 802 1.91 REMARK 500 O HOH B 1031 O HOH B 1040 1.92 REMARK 500 O HOH B 918 O HOH B 1034 1.95 REMARK 500 OE2 GLU A 409 O HOH A 803 1.97 REMARK 500 O HOH B 918 O HOH B 1013 1.98 REMARK 500 OG SER B 651 O HOH B 802 1.99 REMARK 500 O HOH A 949 O HOH A 960 1.99 REMARK 500 O HOH A 914 O HOH A 1020 2.03 REMARK 500 O HOH A 848 O HOH A 984 2.06 REMARK 500 O HOH B 806 O HOH B 977 2.07 REMARK 500 OH TYR B 433 O HOH B 803 2.07 REMARK 500 OD2 ASP A 399 O HOH A 804 2.10 REMARK 500 NE1 TRP A 542 O HOH A 805 2.12 REMARK 500 O HOH B 1004 O HOH B 1025 2.13 REMARK 500 O HOH A 860 O HOH A 981 2.14 REMARK 500 O HOH B 893 O HOH B 997 2.14 REMARK 500 O HOH B 858 O HOH B 967 2.14 REMARK 500 NE ARG B 423 O HOH B 804 2.15 REMARK 500 OH TYR A 433 O HOH A 806 2.15 REMARK 500 OD1 ASN B 648 O HOH B 805 2.16 REMARK 500 OD2 ASP A 484 O HOH A 807 2.17 REMARK 500 OG SER B 381 O HOH B 806 2.17 REMARK 500 O TYR A 524 O HOH A 808 2.18 REMARK 500 OD2 ASP B 419 O HOH B 807 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 363 -60.73 -95.75 REMARK 500 ARG A 483 -41.85 77.49 REMARK 500 ASP A 502 96.03 66.21 REMARK 500 ASP A 536 -159.50 -145.56 REMARK 500 CYS A 595 40.46 -101.87 REMARK 500 ILE B 363 -61.56 -95.73 REMARK 500 ARG B 483 -40.54 78.26 REMARK 500 ASP B 502 95.48 65.46 REMARK 500 ASP B 536 -157.29 -145.56 REMARK 500 CYS B 595 43.13 -100.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 700 DBREF 6BDL A 327 671 UNP Q13976 KGP1_HUMAN 45 389 DBREF 6BDL B 327 671 UNP Q13976 KGP1_HUMAN 45 389 SEQADV 6BDL GLY A 325 UNP Q13976 EXPRESSION TAG SEQADV 6BDL SER A 326 UNP Q13976 EXPRESSION TAG SEQADV 6BDL GLY B 325 UNP Q13976 EXPRESSION TAG SEQADV 6BDL SER B 326 UNP Q13976 EXPRESSION TAG SEQRES 1 A 347 GLY SER GLY LEU ASP ASP VAL SER ASN LYS ALA TYR GLU SEQRES 2 A 347 ASP ALA GLU ALA LYS ALA LYS TYR GLU ALA GLU ALA ALA SEQRES 3 A 347 PHE PHE ALA ASN LEU LYS LEU SER ASP PHE ASN ILE ILE SEQRES 4 A 347 ASP THR LEU GLY VAL GLY GLY PHE GLY ARG VAL GLU LEU SEQRES 5 A 347 VAL GLN LEU LYS SER GLU GLU SER LYS THR PHE ALA MET SEQRES 6 A 347 LYS ILE LEU LYS LYS ARG HIS ILE VAL ASP THR ARG GLN SEQRES 7 A 347 GLN GLU HIS ILE ARG SER GLU LYS GLN ILE MET GLN GLY SEQRES 8 A 347 ALA HIS SER ASP PHE ILE VAL ARG LEU TYR ARG THR PHE SEQRES 9 A 347 LYS ASP SER LYS TYR LEU TYR MET LEU MET GLU ALA CYS SEQRES 10 A 347 LEU GLY GLY GLU LEU TRP THR ILE LEU ARG ASP ARG GLY SEQRES 11 A 347 SER PHE GLU ASP SER THR THR ARG PHE TYR THR ALA CYS SEQRES 12 A 347 VAL VAL GLU ALA PHE ALA TYR LEU HIS SER LYS GLY ILE SEQRES 13 A 347 ILE TYR ARG ASP LEU LYS PRO GLU ASN LEU ILE LEU ASP SEQRES 14 A 347 HIS ARG GLY TYR ALA LYS LEU VAL ASP PHE GLY PHE ALA SEQRES 15 A 347 LYS LYS ILE GLY PHE GLY LYS LYS THR TRP TPO PHE CYS SEQRES 16 A 347 GLY THR PRO GLU TYR VAL ALA PRO GLU ILE ILE LEU ASN SEQRES 17 A 347 LYS GLY HIS ASP ILE SER ALA ASP TYR TRP SER LEU GLY SEQRES 18 A 347 ILE LEU MET TYR GLU LEU LEU THR GLY SER PRO PRO PHE SEQRES 19 A 347 SER GLY PRO ASP PRO MET LYS THR TYR ASN ILE ILE LEU SEQRES 20 A 347 ARG GLY ILE ASP MET ILE GLU PHE PRO LYS LYS ILE ALA SEQRES 21 A 347 LYS ASN ALA ALA ASN LEU ILE LYS LYS LEU CYS ARG ASP SEQRES 22 A 347 ASN PRO SER GLU ARG LEU GLY ASN LEU LYS ASN GLY VAL SEQRES 23 A 347 LYS ASP ILE GLN LYS HIS LYS TRP PHE GLU GLY PHE ASN SEQRES 24 A 347 TRP GLU GLY LEU ARG LYS GLY THR LEU THR PRO PRO ILE SEQRES 25 A 347 ILE PRO SER VAL ALA SER PRO THR ASP THR SER ASN PHE SEQRES 26 A 347 ASP SER PHE PRO GLU ASP ASN ASP GLU PRO PRO PRO ASP SEQRES 27 A 347 ASP ASN SER GLY TRP ASP ILE ASP PHE SEQRES 1 B 347 GLY SER GLY LEU ASP ASP VAL SER ASN LYS ALA TYR GLU SEQRES 2 B 347 ASP ALA GLU ALA LYS ALA LYS TYR GLU ALA GLU ALA ALA SEQRES 3 B 347 PHE PHE ALA ASN LEU LYS LEU SER ASP PHE ASN ILE ILE SEQRES 4 B 347 ASP THR LEU GLY VAL GLY GLY PHE GLY ARG VAL GLU LEU SEQRES 5 B 347 VAL GLN LEU LYS SER GLU GLU SER LYS THR PHE ALA MET SEQRES 6 B 347 LYS ILE LEU LYS LYS ARG HIS ILE VAL ASP THR ARG GLN SEQRES 7 B 347 GLN GLU HIS ILE ARG SER GLU LYS GLN ILE MET GLN GLY SEQRES 8 B 347 ALA HIS SER ASP PHE ILE VAL ARG LEU TYR ARG THR PHE SEQRES 9 B 347 LYS ASP SER LYS TYR LEU TYR MET LEU MET GLU ALA CYS SEQRES 10 B 347 LEU GLY GLY GLU LEU TRP THR ILE LEU ARG ASP ARG GLY SEQRES 11 B 347 SER PHE GLU ASP SER THR THR ARG PHE TYR THR ALA CYS SEQRES 12 B 347 VAL VAL GLU ALA PHE ALA TYR LEU HIS SER LYS GLY ILE SEQRES 13 B 347 ILE TYR ARG ASP LEU LYS PRO GLU ASN LEU ILE LEU ASP SEQRES 14 B 347 HIS ARG GLY TYR ALA LYS LEU VAL ASP PHE GLY PHE ALA SEQRES 15 B 347 LYS LYS ILE GLY PHE GLY LYS LYS THR TRP TPO PHE CYS SEQRES 16 B 347 GLY THR PRO GLU TYR VAL ALA PRO GLU ILE ILE LEU ASN SEQRES 17 B 347 LYS GLY HIS ASP ILE SER ALA ASP TYR TRP SER LEU GLY SEQRES 18 B 347 ILE LEU MET TYR GLU LEU LEU THR GLY SER PRO PRO PHE SEQRES 19 B 347 SER GLY PRO ASP PRO MET LYS THR TYR ASN ILE ILE LEU SEQRES 20 B 347 ARG GLY ILE ASP MET ILE GLU PHE PRO LYS LYS ILE ALA SEQRES 21 B 347 LYS ASN ALA ALA ASN LEU ILE LYS LYS LEU CYS ARG ASP SEQRES 22 B 347 ASN PRO SER GLU ARG LEU GLY ASN LEU LYS ASN GLY VAL SEQRES 23 B 347 LYS ASP ILE GLN LYS HIS LYS TRP PHE GLU GLY PHE ASN SEQRES 24 B 347 TRP GLU GLY LEU ARG LYS GLY THR LEU THR PRO PRO ILE SEQRES 25 B 347 ILE PRO SER VAL ALA SER PRO THR ASP THR SER ASN PHE SEQRES 26 B 347 ASP SER PHE PRO GLU ASP ASN ASP GLU PRO PRO PRO ASP SEQRES 27 B 347 ASP ASN SER GLY TRP ASP ILE ASP PHE MODRES 6BDL TPO A 517 THR MODIFIED RESIDUE MODRES 6BDL TPO B 517 THR MODIFIED RESIDUE HET TPO A 517 11 HET TPO B 517 11 HET IMD A 700 5 HET IMD B 700 5 HETNAM TPO PHOSPHOTHREONINE HETNAM IMD IMIDAZOLE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 IMD 2(C3 H5 N2 1+) FORMUL 5 HOH *468(H2 O) HELIX 1 AA1 GLU A 337 ASN A 354 1 18 HELIX 2 AA2 LEU A 355 SER A 358 5 4 HELIX 3 AA3 LYS A 394 THR A 400 1 7 HELIX 4 AA4 GLN A 402 ALA A 416 1 15 HELIX 5 AA5 LEU A 446 GLY A 454 1 9 HELIX 6 AA6 GLU A 457 LYS A 478 1 22 HELIX 7 AA7 LYS A 486 GLU A 488 5 3 HELIX 8 AA8 THR A 521 VAL A 525 5 5 HELIX 9 AA9 ALA A 526 LEU A 531 1 6 HELIX 10 AB1 ILE A 537 GLY A 554 1 18 HELIX 11 AB2 ASP A 562 GLY A 573 1 12 HELIX 12 AB3 ILE A 574 ILE A 577 5 4 HELIX 13 AB4 ALA A 584 CYS A 595 1 12 HELIX 14 AB5 ASN A 598 ARG A 602 5 5 HELIX 15 AB6 GLY A 609 LYS A 615 1 7 HELIX 16 AB7 HIS A 616 GLU A 620 5 5 HELIX 17 AB8 ASN A 623 LYS A 629 1 7 HELIX 18 AB9 ASP B 338 ASN B 354 1 17 HELIX 19 AC1 LEU B 355 SER B 358 5 4 HELIX 20 AC2 LYS B 394 THR B 400 1 7 HELIX 21 AC3 GLN B 402 ALA B 416 1 15 HELIX 22 AC4 LEU B 446 GLY B 454 1 9 HELIX 23 AC5 GLU B 457 LYS B 478 1 22 HELIX 24 AC6 LYS B 486 GLU B 488 5 3 HELIX 25 AC7 THR B 521 VAL B 525 5 5 HELIX 26 AC8 ALA B 526 LEU B 531 1 6 HELIX 27 AC9 ILE B 537 GLY B 554 1 18 HELIX 28 AD1 ASP B 562 GLY B 573 1 12 HELIX 29 AD2 ILE B 574 ILE B 577 5 4 HELIX 30 AD3 ALA B 584 CYS B 595 1 12 HELIX 31 AD4 ASN B 598 ARG B 602 5 5 HELIX 32 AD5 GLY B 609 LYS B 615 1 7 HELIX 33 AD6 HIS B 616 GLU B 620 5 5 HELIX 34 AD7 ASN B 623 LYS B 629 1 7 SHEET 1 AA1 5 PHE A 360 VAL A 368 0 SHEET 2 AA1 5 GLY A 372 LEU A 379 -1 O LEU A 376 N ILE A 363 SHEET 3 AA1 5 THR A 386 LYS A 393 -1 O MET A 389 N GLU A 375 SHEET 4 AA1 5 TYR A 433 GLU A 439 -1 O MET A 438 N ALA A 388 SHEET 5 AA1 5 LEU A 424 LYS A 429 -1 N ARG A 426 O LEU A 437 SHEET 1 AA2 3 GLY A 444 GLU A 445 0 SHEET 2 AA2 3 LEU A 490 LEU A 492 -1 O LEU A 492 N GLY A 444 SHEET 3 AA2 3 ALA A 498 LEU A 500 -1 O LYS A 499 N ILE A 491 SHEET 1 AA3 2 ILE A 480 ILE A 481 0 SHEET 2 AA3 2 LYS A 507 LYS A 508 -1 O LYS A 507 N ILE A 481 SHEET 1 AA4 5 PHE B 360 VAL B 368 0 SHEET 2 AA4 5 GLY B 372 LEU B 379 -1 O LEU B 376 N ILE B 363 SHEET 3 AA4 5 THR B 386 LYS B 393 -1 O ILE B 391 N ARG B 373 SHEET 4 AA4 5 TYR B 433 GLU B 439 -1 O MET B 438 N ALA B 388 SHEET 5 AA4 5 LEU B 424 LYS B 429 -1 N ARG B 426 O LEU B 437 SHEET 1 AA5 3 GLY B 444 GLU B 445 0 SHEET 2 AA5 3 LEU B 490 LEU B 492 -1 O LEU B 492 N GLY B 444 SHEET 3 AA5 3 ALA B 498 LEU B 500 -1 O LYS B 499 N ILE B 491 SHEET 1 AA6 2 ILE B 480 ILE B 481 0 SHEET 2 AA6 2 LYS B 507 LYS B 508 -1 O LYS B 507 N ILE B 481 LINK C TRP A 516 N TPO A 517 1555 1555 1.33 LINK C TPO A 517 N PHE A 518 1555 1555 1.33 LINK C TRP B 516 N TPO B 517 1555 1555 1.33 LINK C TPO B 517 N PHE B 518 1555 1555 1.33 SITE 1 AC1 5 LEU A 366 ALA A 388 GLU A 439 CYS A 441 SITE 2 AC1 5 ILE A 491 SITE 1 AC2 4 ALA B 388 GLU B 439 CYS B 441 ILE B 491 CRYST1 85.114 50.879 85.531 90.00 90.00 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011749 0.000000 0.000001 0.00000 SCALE2 0.000000 0.019654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011692 0.00000