HEADER TRANSFERASE 23-OCT-17 6BDN TITLE CRYSTAL STRUCTURE OF HUMAN TAO3 KINASE BINDING ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TAO3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-316; COMPND 5 SYNONYM: CUTANEOUS T-CELL LYMPHOMA-ASSOCIATED ANTIGEN HD-CL-09, CTCL- COMPND 6 ASSOCIATED ANTIGEN HD-CL-09, DENDRITIC CELL-DERIVED PROTEIN KINASE, COMPND 7 JNK/SAPK-INHIBITORY KINASE, JUN KINASE-INHIBITORY KINASE, KINASE FROM COMPND 8 CHICKEN HOMOLOG A, HKFC-A, THOUSAND AND ONE AMINO ACID PROTEIN 3; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAOK3, DPK, JIK, KDS, MAP3K18; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TAOK3, TRANSFERASE, KINASE, SERINE/THREONINE-PROTEIN KINASE, ADT- KEYWDS 2 BINDING, MAPK CASCADE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.ALESHIN,L.A.BANKTON,A.PINKERTON,S.A.COURTNEIDGE,R.C.LIDDINGTON REVDAT 2 04-OCT-23 6BDN 1 REMARK REVDAT 1 10-APR-19 6BDN 0 JRNL AUTH A.E.ALESHIN,L.A.BANKTON,A.PINKERTON,R.C.LIDDINGTON, JRNL AUTH 2 S.A.COURTNEIDGE JRNL TITL CRYSTAL STRUCTURE OF HUMAN TAO3 KINASE BINDING ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 246 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2606 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2469 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3537 ; 2.383 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5690 ; 1.164 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;34.296 ;23.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;14.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2906 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 609 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12708 REMARK 200 MONOCHROMATOR : SI(111) SIDE SCATTERING I-BEAM REMARK 200 BENT SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1U5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS: 1.8 UL PROTEIN + 1.0 UL WELL REMARK 280 SOLUTION, PROTEIN SOLUTION: 6.5 MG/ML TAO3K IN 0.7 MM ADP, 5 MM REMARK 280 MAGNESIUM CHLORIDE, 100 MM SODIUM CHLORIDE, 25 MM TRIS, PH 8.0, REMARK 280 2 MM BME, 0.3 MM EDTA, WELL SOLUTION: 20% PEG3350, 0.2 M REMARK 280 AMMONIUM SULFATE, 0.1 M BIS-TRIS, PH 6.5, CRYOPROTECTANT: 20% REMARK 280 PEG1500, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 279.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.59350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.08850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.94850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.08850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.59350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.94850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 145 H ASP A 147 1.24 REMARK 500 HE ARG A 77 O HOH A 501 1.55 REMARK 500 O HOH A 597 O HOH A 610 1.79 REMARK 500 O HOH A 501 O HOH A 706 1.89 REMARK 500 O HOH A 691 O HOH A 717 1.91 REMARK 500 O HOH A 509 O HOH A 673 1.96 REMARK 500 O HOH A 669 O HOH A 711 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 273 CD ARG A 273 NE -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 68 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 199 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 252 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 273 CG - CD - NE ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG A 273 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 273 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 295 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 30.10 -99.19 REMARK 500 ARG A 146 -5.19 74.70 REMARK 500 ASP A 165 80.15 62.01 REMARK 500 ARG A 217 -21.04 84.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 152 OD1 REMARK 620 2 ASP A 165 OD2 89.4 REMARK 620 3 ADP A 404 O1B 179.2 90.3 REMARK 620 4 ADP A 404 O1A 94.2 96.4 86.6 REMARK 620 5 HOH A 536 O 85.4 173.9 94.8 87.2 REMARK 620 6 HOH A 614 O 91.0 90.6 88.3 171.3 86.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 404 DBREF 6BDN A 1 316 UNP Q9H2K8 TAOK3_HUMAN 1 316 SEQADV 6BDN PRO A -3 UNP Q9H2K8 CLONING ARTIFACT SEQADV 6BDN LEU A -2 UNP Q9H2K8 CLONING ARTIFACT SEQADV 6BDN GLY A -1 UNP Q9H2K8 CLONING ARTIFACT SEQADV 6BDN SER A 0 UNP Q9H2K8 CLONING ARTIFACT SEQADV 6BDN ALA A 2 UNP Q9H2K8 ARG 2 ENGINEERED MUTATION SEQADV 6BDN ALA A 3 UNP Q9H2K8 LYS 3 ENGINEERED MUTATION SEQRES 1 A 320 PRO LEU GLY SER MET ALA ALA GLY VAL LEU LYS ASP PRO SEQRES 2 A 320 GLU ILE ALA ASP LEU PHE TYR LYS ASP ASP PRO GLU GLU SEQRES 3 A 320 LEU PHE ILE GLY LEU HIS GLU ILE GLY HIS GLY SER PHE SEQRES 4 A 320 GLY ALA VAL TYR PHE ALA THR ASN ALA HIS THR SER GLU SEQRES 5 A 320 VAL VAL ALA ILE LYS LYS MET SER TYR SER GLY LYS GLN SEQRES 6 A 320 THR HIS GLU LYS TRP GLN ASP ILE LEU LYS GLU VAL LYS SEQRES 7 A 320 PHE LEU ARG GLN LEU LYS HIS PRO ASN THR ILE GLU TYR SEQRES 8 A 320 LYS GLY CYS TYR LEU LYS GLU HIS THR ALA TRP LEU VAL SEQRES 9 A 320 MET GLU TYR CYS LEU GLY SER ALA SER ASP LEU LEU GLU SEQRES 10 A 320 VAL HIS LYS LYS PRO LEU GLN GLU VAL GLU ILE ALA ALA SEQRES 11 A 320 ILE THR HIS GLY ALA LEU HIS GLY LEU ALA TYR LEU HIS SEQRES 12 A 320 SER HIS ALA LEU ILE HIS ARG ASP ILE LYS ALA GLY ASN SEQRES 13 A 320 ILE LEU LEU THR GLU PRO GLY GLN VAL LYS LEU ALA ASP SEQRES 14 A 320 PHE GLY SER ALA SER MET ALA SER PRO ALA ASN SER PHE SEQRES 15 A 320 VAL GLY THR PRO TYR TRP MET ALA PRO GLU VAL ILE LEU SEQRES 16 A 320 ALA MET ASP GLU GLY GLN TYR ASP GLY LYS VAL ASP ILE SEQRES 17 A 320 TRP SER LEU GLY ILE THR CYS ILE GLU LEU ALA GLU ARG SEQRES 18 A 320 LYS PRO PRO LEU PHE ASN MET ASN ALA MET SER ALA LEU SEQRES 19 A 320 TYR HIS ILE ALA GLN ASN ASP SER PRO THR LEU GLN SER SEQRES 20 A 320 ASN GLU TRP THR ASP SER PHE ARG ARG PHE VAL ASP TYR SEQRES 21 A 320 CYS LEU GLN LYS ILE PRO GLN GLU ARG PRO THR SER ALA SEQRES 22 A 320 GLU LEU LEU ARG HIS ASP PHE VAL ARG ARG ASP ARG PRO SEQRES 23 A 320 LEU ARG VAL LEU ILE ASP LEU ILE GLN ARG THR LYS ASP SEQRES 24 A 320 ALA VAL ARG GLU LEU ASP ASN LEU GLN TYR ARG LYS MET SEQRES 25 A 320 LYS LYS ILE LEU PHE GLN GLU THR HET PO4 A 401 4 HET SO4 A 402 5 HET MG A 403 1 HET ADP A 404 39 HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 PO4 O4 P 3- FORMUL 3 SO4 O4 S 2- FORMUL 4 MG MG 2+ FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *246(H2 O) HELIX 1 AA1 ASP A 8 ASP A 13 1 6 HELIX 2 AA2 ASP A 19 LEU A 23 1 5 HELIX 3 AA3 SER A 58 LYS A 60 5 3 HELIX 4 AA4 GLN A 61 GLN A 78 1 18 HELIX 5 AA5 ALA A 108 LYS A 116 1 9 HELIX 6 AA6 GLN A 120 HIS A 141 1 22 HELIX 7 AA7 LYS A 149 GLY A 151 5 3 HELIX 8 AA8 THR A 181 MET A 185 5 5 HELIX 9 AA9 ALA A 186 MET A 193 1 8 HELIX 10 AB1 GLY A 200 ARG A 217 1 18 HELIX 11 AB2 ASN A 225 ASN A 236 1 12 HELIX 12 AB3 THR A 247 LEU A 258 1 12 HELIX 13 AB4 ILE A 261 ARG A 265 5 5 HELIX 14 AB5 THR A 267 LEU A 272 1 6 HELIX 15 AB6 HIS A 274 ARG A 279 1 6 HELIX 16 AB7 ARG A 284 GLU A 299 1 16 HELIX 17 AB8 ASP A 301 LYS A 309 1 9 HELIX 18 AB9 LYS A 310 PHE A 313 5 4 SHEET 1 AA1 5 PHE A 24 GLY A 33 0 SHEET 2 AA1 5 GLY A 36 ASN A 43 -1 O THR A 42 N ILE A 25 SHEET 3 AA1 5 VAL A 49 SER A 56 -1 O VAL A 50 N ALA A 41 SHEET 4 AA1 5 THR A 96 GLU A 102 -1 O LEU A 99 N LYS A 53 SHEET 5 AA1 5 TYR A 87 LYS A 93 -1 N LYS A 88 O VAL A 100 SHEET 1 AA2 3 GLY A 106 SER A 107 0 SHEET 2 AA2 3 ILE A 153 LEU A 155 -1 O LEU A 155 N GLY A 106 SHEET 3 AA2 3 VAL A 161 LEU A 163 -1 O LYS A 162 N LEU A 154 LINK OG SER A 177 P PO4 A 401 1555 1555 1.57 LINK OD1 ASN A 152 MG MG A 403 1555 1555 2.16 LINK OD2 ASP A 165 MG MG A 403 1555 1555 2.10 LINK MG MG A 403 O1B ADP A 404 1555 1555 2.09 LINK MG MG A 403 O1A ADP A 404 1555 1555 2.05 LINK MG MG A 403 O HOH A 536 1555 1555 2.08 LINK MG MG A 403 O HOH A 614 1555 1555 2.09 CISPEP 1 SER A 173 PRO A 174 0 9.45 SITE 1 AC1 7 ARG A 146 ASN A 176 SER A 177 HOH A 545 SITE 2 AC1 7 HOH A 547 HOH A 593 HOH A 655 SITE 1 AC2 5 LYS A 149 HOH A 536 HOH A 559 HOH A 614 SITE 2 AC2 5 HOH A 622 SITE 1 AC3 5 ASN A 152 ASP A 165 ADP A 404 HOH A 536 SITE 2 AC3 5 HOH A 614 SITE 1 AC4 23 ILE A 30 GLY A 31 GLY A 33 PHE A 35 SITE 2 AC4 23 VAL A 38 ALA A 51 LYS A 53 GLU A 102 SITE 3 AC4 23 CYS A 104 ASP A 110 GLY A 151 ASN A 152 SITE 4 AC4 23 LEU A 154 ASP A 165 LYS A 310 MG A 403 SITE 5 AC4 23 HOH A 509 HOH A 536 HOH A 556 HOH A 573 SITE 6 AC4 23 HOH A 614 HOH A 671 HOH A 672 CRYST1 55.187 59.897 110.177 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009076 0.00000