HEADER OXIDOREDUCTASE 26-OCT-17 6BFG TITLE CRYSTAL STRUCTURE OF MONOTOPIC MEMBRANE PROTEIN (S)-MANDELATE TITLE 2 DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-MANDELATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L(+)-MANDELATE DEHYDROGENASE,MDH; COMPND 5 EC: 1.1.99.31; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_COMMON: ARTHROBACTER SIDEROCAPSULATUS; SOURCE 4 ORGANISM_TAXID: 303; SOURCE 5 GENE: MDLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, FLAVOPROTEIN, ALPHA-HYDROXY ACID ENZYME, TIM KEYWDS 2 BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SUKUMAR REVDAT 5 04-OCT-23 6BFG 1 REMARK REVDAT 4 01-JAN-20 6BFG 1 REMARK REVDAT 3 20-FEB-19 6BFG 1 REMARK REVDAT 2 07-NOV-18 6BFG 1 JRNL REVDAT 1 15-AUG-18 6BFG 0 JRNL AUTH N.SUKUMAR,S.LIU,W.LI,F.S.MATHEWS,B.MITRA,P.KANDAVELU JRNL TITL STRUCTURE OF THE MONOTOPIC MEMBRANE PROTEIN (S)-MANDELATE JRNL TITL 2 DEHYDROGENASE AT 2.2 ANGSTROM RESOLUTION. JRNL REF BIOCHIMIE V. 154 45 2018 JRNL REFN ISSN 1638-6183 JRNL PMID 30071260 JRNL DOI 10.1016/J.BIOCHI.2018.07.017 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 54963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4494 - 5.2878 0.98 4166 159 0.1949 0.2598 REMARK 3 2 5.2878 - 4.1984 0.99 4088 153 0.1445 0.1754 REMARK 3 3 4.1984 - 3.6680 0.99 4062 149 0.1480 0.1642 REMARK 3 4 3.6680 - 3.3328 1.00 4049 152 0.1662 0.2087 REMARK 3 5 3.3328 - 3.0940 0.98 3969 150 0.1925 0.2433 REMARK 3 6 3.0940 - 2.9117 0.99 4056 154 0.2084 0.2433 REMARK 3 7 2.9117 - 2.7659 1.00 4019 159 0.2127 0.2410 REMARK 3 8 2.7659 - 2.6455 1.00 3998 151 0.2342 0.2899 REMARK 3 9 2.6455 - 2.5437 1.00 4007 140 0.2552 0.3002 REMARK 3 10 2.5437 - 2.4559 0.98 3948 154 0.2844 0.3375 REMARK 3 11 2.4559 - 2.3791 0.92 3676 137 0.2916 0.3695 REMARK 3 12 2.3791 - 2.3111 0.83 3350 126 0.2813 0.3505 REMARK 3 13 2.3111 - 2.2503 0.75 2993 102 0.2815 0.3010 REMARK 3 14 2.2503 - 2.1954 0.65 2590 106 0.2744 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6103 REMARK 3 ANGLE : 1.164 8245 REMARK 3 CHIRALITY : 0.059 916 REMARK 3 PLANARITY : 0.008 1043 REMARK 3 DIHEDRAL : 14.607 3634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 4396 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1P4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MONOETHYL ETHER 2000, 20% REMARK 280 GLYCEROL, 100MM TRI-SODIUM CITRATE PH 5.6, 5% PEG200, 1.3MM FMN, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.67900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.93950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.63000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.67900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.93950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.63000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.67900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.93950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.63000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.67900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.93950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 376 REMARK 465 VAL A 377 REMARK 465 THR A 378 REMARK 465 ASN A 379 REMARK 465 THR A 380 REMARK 465 ALA A 381 REMARK 465 PRO A 382 REMARK 465 VAL A 383 REMARK 465 ASP A 384 REMARK 465 HIS A 385 REMARK 465 LEU A 386 REMARK 465 ILE A 387 REMARK 465 GLY A 388 REMARK 465 LYS A 389 REMARK 465 GLY A 390 REMARK 465 THR A 391 REMARK 465 HIS A 392 REMARK 465 ALA A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 376 REMARK 465 VAL B 377 REMARK 465 THR B 378 REMARK 465 ASN B 379 REMARK 465 THR B 380 REMARK 465 ALA B 381 REMARK 465 PRO B 382 REMARK 465 VAL B 383 REMARK 465 ASP B 384 REMARK 465 HIS B 385 REMARK 465 LEU B 386 REMARK 465 ILE B 387 REMARK 465 GLY B 388 REMARK 465 LYS B 389 REMARK 465 GLY B 390 REMARK 465 THR B 391 REMARK 465 HIS B 392 REMARK 465 ALA B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 17 CD CE NZ REMARK 480 ARG A 59 CD NE CZ NH1 NH2 REMARK 480 ARG A 70 NE CZ NH1 NH2 REMARK 480 LYS A 89 CD CE NZ REMARK 480 GLU A 116 CD OE1 OE2 REMARK 480 ARG A 120 CZ NH1 NH2 REMARK 480 GLU A 136 CG CD OE1 OE2 REMARK 480 LYS A 144 CD CE NZ REMARK 480 ARG A 172 CD NE CZ NH1 NH2 REMARK 480 TYR A 179 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG A 199 CD NE CZ NH1 NH2 REMARK 480 ARG A 225 CD NE CZ NH1 NH2 REMARK 480 GLN A 226 CG CD OE1 NE2 REMARK 480 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 17 CG CD CE NZ REMARK 480 ARG B 59 CD NE CZ NH1 NH2 REMARK 480 LYS B 89 CE NZ REMARK 480 LYS B 174 CD CE NZ REMARK 480 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 295 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 121 O HOH A 501 1.47 REMARK 500 OD1 ASP B 56 HG SER B 58 1.57 REMARK 500 HH21 ARG B 15 O LEU B 330 1.60 REMARK 500 NH2 ARG A 15 OE2 GLU A 28 1.94 REMARK 500 O HOH A 573 O HOH A 628 2.13 REMARK 500 O HOH A 631 O HOH A 642 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 354 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 354 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 -114.29 49.48 REMARK 500 ALA A 110 32.80 -95.10 REMARK 500 SER A 178 -162.92 63.79 REMARK 500 THR A 213 69.68 -111.19 REMARK 500 HIS A 245 -153.13 -97.74 REMARK 500 SER A 304 98.19 93.72 REMARK 500 ARG A 336 19.59 -147.92 REMARK 500 ASN B 4 55.79 -91.07 REMARK 500 GLU B 32 -116.00 51.20 REMARK 500 SER B 178 -164.23 64.41 REMARK 500 THR B 213 70.63 -110.70 REMARK 500 HIS B 245 -153.06 -97.94 REMARK 500 SER B 304 97.59 98.88 REMARK 500 ARG B 336 21.00 -149.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG B 402 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 LMT B 407 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 408 DBREF 6BFG A 1 393 UNP P20932 MDLB_PSEPU 1 393 DBREF 6BFG B 1 393 UNP P20932 MDLB_PSEPU 1 393 SEQADV 6BFG HIS A 394 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS A 395 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS A 396 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS A 397 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS A 398 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS A 399 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS B 394 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS B 395 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS B 396 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS B 397 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS B 398 UNP P20932 EXPRESSION TAG SEQADV 6BFG HIS B 399 UNP P20932 EXPRESSION TAG SEQRES 1 A 399 MET SER GLN ASN LEU PHE ASN VAL GLU ASP TYR ARG LYS SEQRES 2 A 399 LEU ARG GLN LYS ARG LEU PRO LYS MET VAL TYR ASP TYR SEQRES 3 A 399 LEU GLU GLY GLY ALA GLU ASP GLU TYR GLY VAL LYS HIS SEQRES 4 A 399 ASN ARG ASP VAL PHE GLN GLN TRP ARG PHE LYS PRO LYS SEQRES 5 A 399 ARG LEU VAL ASP VAL SER ARG ARG SER LEU GLN ALA GLU SEQRES 6 A 399 VAL LEU GLY LYS ARG GLN SER MET PRO LEU LEU ILE GLY SEQRES 7 A 399 PRO THR GLY LEU ASN GLY ALA LEU TRP PRO LYS GLY ASP SEQRES 8 A 399 LEU ALA LEU ALA ARG ALA ALA THR LYS ALA GLY ILE PRO SEQRES 9 A 399 PHE VAL LEU SER THR ALA SER ASN MET SER ILE GLU ASP SEQRES 10 A 399 LEU ALA ARG GLN CYS ASP GLY ASP LEU TRP PHE GLN LEU SEQRES 11 A 399 TYR VAL ILE HIS ARG GLU ILE ALA GLN GLY MET VAL LEU SEQRES 12 A 399 LYS ALA LEU HIS THR GLY TYR THR THR LEU VAL LEU THR SEQRES 13 A 399 THR ASP VAL ALA VAL ASN GLY TYR ARG GLU ARG ASP LEU SEQRES 14 A 399 HIS ASN ARG PHE LYS ILE PRO MET SER TYR SER ALA LYS SEQRES 15 A 399 VAL VAL LEU ASP GLY CYS LEU HIS PRO ARG TRP SER LEU SEQRES 16 A 399 ASP PHE VAL ARG HIS GLY MET PRO GLN LEU ALA ASN PHE SEQRES 17 A 399 VAL SER SER GLN THR SER SER LEU GLU MET GLN ALA ALA SEQRES 18 A 399 LEU MET SER ARG GLN MET ASP ALA SER PHE ASN TRP GLU SEQRES 19 A 399 ALA LEU ARG TRP LEU ARG ASP LEU TRP PRO HIS LYS LEU SEQRES 20 A 399 LEU VAL LYS GLY LEU LEU SER ALA GLU ASP ALA ASP ARG SEQRES 21 A 399 CYS ILE ALA GLU GLY ALA ASP GLY VAL ILE LEU SER ASN SEQRES 22 A 399 HIS GLY GLY ARG GLN LEU ASP CYS ALA ILE SER PRO MET SEQRES 23 A 399 GLU VAL LEU ALA GLN SER VAL ALA LYS THR GLY LYS PRO SEQRES 24 A 399 VAL LEU ILE ASP SER GLY PHE ARG ARG GLY SER ASP ILE SEQRES 25 A 399 VAL LYS ALA LEU ALA LEU GLY ALA GLU ALA VAL LEU LEU SEQRES 26 A 399 GLY ARG ALA THR LEU TYR GLY LEU ALA ALA ARG GLY GLU SEQRES 27 A 399 THR GLY VAL ASP GLU VAL LEU THR LEU LEU LYS ALA ASP SEQRES 28 A 399 ILE ASP ARG THR LEU ALA GLN ILE GLY CYS PRO ASP ILE SEQRES 29 A 399 THR SER LEU SER PRO ASP TYR LEU GLN ASN GLU GLY VAL SEQRES 30 A 399 THR ASN THR ALA PRO VAL ASP HIS LEU ILE GLY LYS GLY SEQRES 31 A 399 THR HIS ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 399 MET SER GLN ASN LEU PHE ASN VAL GLU ASP TYR ARG LYS SEQRES 2 B 399 LEU ARG GLN LYS ARG LEU PRO LYS MET VAL TYR ASP TYR SEQRES 3 B 399 LEU GLU GLY GLY ALA GLU ASP GLU TYR GLY VAL LYS HIS SEQRES 4 B 399 ASN ARG ASP VAL PHE GLN GLN TRP ARG PHE LYS PRO LYS SEQRES 5 B 399 ARG LEU VAL ASP VAL SER ARG ARG SER LEU GLN ALA GLU SEQRES 6 B 399 VAL LEU GLY LYS ARG GLN SER MET PRO LEU LEU ILE GLY SEQRES 7 B 399 PRO THR GLY LEU ASN GLY ALA LEU TRP PRO LYS GLY ASP SEQRES 8 B 399 LEU ALA LEU ALA ARG ALA ALA THR LYS ALA GLY ILE PRO SEQRES 9 B 399 PHE VAL LEU SER THR ALA SER ASN MET SER ILE GLU ASP SEQRES 10 B 399 LEU ALA ARG GLN CYS ASP GLY ASP LEU TRP PHE GLN LEU SEQRES 11 B 399 TYR VAL ILE HIS ARG GLU ILE ALA GLN GLY MET VAL LEU SEQRES 12 B 399 LYS ALA LEU HIS THR GLY TYR THR THR LEU VAL LEU THR SEQRES 13 B 399 THR ASP VAL ALA VAL ASN GLY TYR ARG GLU ARG ASP LEU SEQRES 14 B 399 HIS ASN ARG PHE LYS ILE PRO MET SER TYR SER ALA LYS SEQRES 15 B 399 VAL VAL LEU ASP GLY CYS LEU HIS PRO ARG TRP SER LEU SEQRES 16 B 399 ASP PHE VAL ARG HIS GLY MET PRO GLN LEU ALA ASN PHE SEQRES 17 B 399 VAL SER SER GLN THR SER SER LEU GLU MET GLN ALA ALA SEQRES 18 B 399 LEU MET SER ARG GLN MET ASP ALA SER PHE ASN TRP GLU SEQRES 19 B 399 ALA LEU ARG TRP LEU ARG ASP LEU TRP PRO HIS LYS LEU SEQRES 20 B 399 LEU VAL LYS GLY LEU LEU SER ALA GLU ASP ALA ASP ARG SEQRES 21 B 399 CYS ILE ALA GLU GLY ALA ASP GLY VAL ILE LEU SER ASN SEQRES 22 B 399 HIS GLY GLY ARG GLN LEU ASP CYS ALA ILE SER PRO MET SEQRES 23 B 399 GLU VAL LEU ALA GLN SER VAL ALA LYS THR GLY LYS PRO SEQRES 24 B 399 VAL LEU ILE ASP SER GLY PHE ARG ARG GLY SER ASP ILE SEQRES 25 B 399 VAL LYS ALA LEU ALA LEU GLY ALA GLU ALA VAL LEU LEU SEQRES 26 B 399 GLY ARG ALA THR LEU TYR GLY LEU ALA ALA ARG GLY GLU SEQRES 27 B 399 THR GLY VAL ASP GLU VAL LEU THR LEU LEU LYS ALA ASP SEQRES 28 B 399 ILE ASP ARG THR LEU ALA GLN ILE GLY CYS PRO ASP ILE SEQRES 29 B 399 THR SER LEU SER PRO ASP TYR LEU GLN ASN GLU GLY VAL SEQRES 30 B 399 THR ASN THR ALA PRO VAL ASP HIS LEU ILE GLY LYS GLY SEQRES 31 B 399 THR HIS ALA HIS HIS HIS HIS HIS HIS HET FMN A 401 50 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET SO4 A 405 5 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET CIT A 410 13 HET EDO A 411 4 HET FMN B 401 50 HET PEG B 402 5 HET GOL B 403 6 HET PO4 B 404 5 HET NA B 405 1 HET EDO B 406 4 HET LMT B 407 74 HET EDO B 408 4 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CIT CITRIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 7 SO4 O4 S 2- FORMUL 8 EDO 7(C2 H6 O2) FORMUL 12 CIT C6 H8 O7 FORMUL 15 PEG C4 H10 O3 FORMUL 17 PO4 O4 P 3- FORMUL 18 NA NA 1+ FORMUL 20 LMT C24 H46 O11 FORMUL 22 HOH *260(H2 O) HELIX 1 AA1 ASN A 7 LEU A 19 1 13 HELIX 2 AA2 PRO A 20 GLY A 29 1 10 HELIX 3 AA3 GLU A 34 VAL A 43 1 10 HELIX 4 AA4 PHE A 44 TRP A 47 5 4 HELIX 5 AA5 LEU A 82 LEU A 86 5 5 HELIX 6 AA6 LYS A 89 ALA A 101 1 13 HELIX 7 AA7 SER A 114 CYS A 122 1 9 HELIX 8 AA8 HIS A 134 THR A 148 1 15 HELIX 9 AA9 ARG A 165 ARG A 172 1 8 HELIX 10 AB1 SER A 180 LEU A 189 1 10 HELIX 11 AB2 HIS A 190 GLY A 201 1 12 HELIX 12 AB3 LEU A 205 VAL A 209 5 5 HELIX 13 AB4 SER A 215 MET A 227 1 13 HELIX 14 AB5 ASN A 232 TRP A 243 1 12 HELIX 15 AB6 SER A 254 GLU A 264 1 11 HELIX 16 AB7 ASN A 273 ARG A 277 5 5 HELIX 17 AB8 SER A 284 GLU A 287 5 4 HELIX 18 AB9 VAL A 288 GLY A 297 1 10 HELIX 19 AC1 ARG A 308 GLY A 319 1 12 HELIX 20 AC2 GLY A 326 GLY A 360 1 35 HELIX 21 AC3 ASP A 363 LEU A 367 5 5 HELIX 22 AC4 SER A 368 ASP A 370 5 3 HELIX 23 AC5 ASN B 7 LEU B 19 1 13 HELIX 24 AC6 PRO B 20 GLY B 29 1 10 HELIX 25 AC7 GLU B 34 VAL B 43 1 10 HELIX 26 AC8 PHE B 44 TRP B 47 5 4 HELIX 27 AC9 LEU B 82 LEU B 86 5 5 HELIX 28 AD1 LYS B 89 ALA B 101 1 13 HELIX 29 AD2 SER B 114 CYS B 122 1 9 HELIX 30 AD3 HIS B 134 THR B 148 1 15 HELIX 31 AD4 ARG B 165 ARG B 172 1 8 HELIX 32 AD5 SER B 180 LEU B 189 1 10 HELIX 33 AD6 HIS B 190 GLY B 201 1 12 HELIX 34 AD7 LEU B 205 VAL B 209 5 5 HELIX 35 AD8 SER B 215 MET B 227 1 13 HELIX 36 AD9 ASN B 232 TRP B 243 1 12 HELIX 37 AE1 SER B 254 GLU B 264 1 11 HELIX 38 AE2 ASN B 273 ARG B 277 5 5 HELIX 39 AE3 SER B 284 GLU B 287 5 4 HELIX 40 AE4 VAL B 288 GLY B 297 1 10 HELIX 41 AE5 ARG B 308 GLY B 319 1 12 HELIX 42 AE6 GLY B 326 GLY B 360 1 35 HELIX 43 AE7 ASP B 363 LEU B 367 5 5 HELIX 44 AE8 SER B 368 ASP B 370 5 3 SHEET 1 AA1 2 ARG A 48 PHE A 49 0 SHEET 2 AA1 2 LEU A 372 GLN A 373 -1 O GLN A 373 N ARG A 48 SHEET 1 AA2 2 ALA A 64 VAL A 66 0 SHEET 2 AA2 2 LYS A 69 GLN A 71 -1 O LYS A 69 N VAL A 66 SHEET 1 AA3 2 LEU A 75 ILE A 77 0 SHEET 2 AA3 2 VAL A 323 LEU A 325 1 O LEU A 325 N LEU A 76 SHEET 1 AA4 6 PHE A 105 SER A 108 0 SHEET 2 AA4 6 LEU A 126 TYR A 131 1 O TRP A 127 N LEU A 107 SHEET 3 AA4 6 THR A 152 THR A 156 1 O VAL A 154 N PHE A 128 SHEET 4 AA4 6 LYS A 246 LEU A 252 1 O LEU A 248 N LEU A 155 SHEET 5 AA4 6 GLY A 268 LEU A 271 1 O ILE A 270 N VAL A 249 SHEET 6 AA4 6 VAL A 300 ILE A 302 1 O LEU A 301 N LEU A 271 SHEET 1 AA5 2 ARG B 48 PHE B 49 0 SHEET 2 AA5 2 LEU B 372 GLN B 373 -1 O GLN B 373 N ARG B 48 SHEET 1 AA6 2 ALA B 64 VAL B 66 0 SHEET 2 AA6 2 LYS B 69 GLN B 71 -1 O GLN B 71 N ALA B 64 SHEET 1 AA7 2 LEU B 75 ILE B 77 0 SHEET 2 AA7 2 VAL B 323 LEU B 325 1 O LEU B 325 N LEU B 76 SHEET 1 AA8 6 PHE B 105 SER B 108 0 SHEET 2 AA8 6 LEU B 126 TYR B 131 1 O TRP B 127 N LEU B 107 SHEET 3 AA8 6 THR B 152 THR B 156 1 O VAL B 154 N LEU B 130 SHEET 4 AA8 6 LYS B 246 LEU B 252 1 O LYS B 250 N LEU B 155 SHEET 5 AA8 6 GLY B 268 LEU B 271 1 O ILE B 270 N VAL B 249 SHEET 6 AA8 6 VAL B 300 ILE B 302 1 O LEU B 301 N VAL B 269 SITE 1 AC1 25 TYR A 26 LEU A 27 PRO A 79 THR A 80 SITE 2 AC1 25 GLY A 81 SER A 108 GLN A 129 TYR A 131 SITE 3 AC1 25 THR A 156 LYS A 250 SER A 272 HIS A 274 SITE 4 AC1 25 GLY A 275 ARG A 277 ASP A 303 SER A 304 SITE 5 AC1 25 GLY A 305 ARG A 307 GLY A 326 ARG A 327 SITE 6 AC1 25 GOL A 404 HOH A 552 HOH A 563 HOH A 584 SITE 7 AC1 25 HOH A 599 SITE 1 AC2 2 ASP A 196 GOL A 403 SITE 1 AC3 2 ARG A 192 GOL A 402 SITE 1 AC4 6 TYR A 26 TYR A 131 ARG A 165 HIS A 274 SITE 2 AC4 6 ARG A 277 FMN A 401 SITE 1 AC5 2 ASP A 186 LEU A 189 SITE 1 AC6 3 TYR A 24 GLU A 28 ARG A 167 SITE 1 AC7 7 LYS A 52 ARG A 53 VAL A 55 ALA A 357 SITE 2 AC7 7 HOH A 511 THR B 157 ALA B 160 SITE 1 AC8 3 LYS A 17 PRO A 191 ARG A 192 SITE 1 AC9 6 PRO A 88 LYS A 89 LEU A 92 ALA A 93 SITE 2 AC9 6 GLU A 338 ASP B 123 SITE 1 AD1 23 PRO B 79 THR B 80 GLY B 81 SER B 108 SITE 2 AD1 23 GLN B 129 TYR B 131 THR B 156 LYS B 250 SITE 3 AD1 23 SER B 272 HIS B 274 GLY B 275 ARG B 277 SITE 4 AD1 23 ASP B 303 SER B 304 GLY B 305 ARG B 307 SITE 5 AD1 23 GLY B 326 ARG B 327 GOL B 403 HOH B 511 SITE 6 AD1 23 HOH B 555 HOH B 563 HOH B 572 SITE 1 AD2 2 ARG B 192 ASP B 196 SITE 1 AD3 6 TYR B 26 TYR B 131 ARG B 165 HIS B 274 SITE 2 AD3 6 ARG B 277 FMN B 401 SITE 1 AD4 2 ASP B 186 LEU B 189 SITE 1 AD5 3 SER B 114 ILE B 115 GLU B 116 SITE 1 AD6 8 TYR A 164 PHE B 6 ASN B 7 LEU B 347 SITE 2 AD6 8 ALA B 350 ASP B 351 ARG B 354 HOH B 515 SITE 1 AD7 8 ASN B 162 PHE B 173 ILE B 175 MET B 177 SITE 2 AD7 8 VAL B 183 GLY B 187 PHE B 197 MET B 202 SITE 1 AD8 8 THR A 157 ALA A 160 LYS B 52 ARG B 53 SITE 2 AD8 8 VAL B 55 ALA B 357 GLY B 360 HOH B 561 CRYST1 123.358 129.879 143.260 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006980 0.00000