HEADER TRANSFERASE 30-OCT-17 6BHG TITLE CRYSTAL STRUCTURE OF SETDB1 WITH A MODIFIED H3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 190-410; COMPND 5 SYNONYM: ERG-ASSOCIATED PROTEIN WITH SET DOMAIN, ESET, HISTONE H3-K9 COMPND 6 METHYLTRANSFERASE 4, H3-K9-HMTASE 4, LYSINE N-METHYLTRANSFERASE 1E, COMPND 7 SET DOMAIN BIFURCATED 1; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HISTONE H3.1; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: HISTONE H3/A, HISTONE H3/B, HISTONE H3/C, HISTONE H3/D, COMPND 14 HISTONE H3/F, HISTONE H3/H, HISTONE H3/I, HISTONE H3/J, HISTONE H3/K, COMPND 15 HISTONE H3/L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETDB1, KIAA0067, KMT1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.QIN,W.TEMPEL,A.DONG,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 15-NOV-23 6BHG 1 REMARK REVDAT 3 04-OCT-23 6BHG 1 REMARK REVDAT 2 03-JAN-18 6BHG 1 JRNL REVDAT 1 06-DEC-17 6BHG 0 JRNL AUTH R.Z.JURKOWSKA,S.QIN,G.KUNGULOVSKI,W.TEMPEL,Y.LIU, JRNL AUTH 2 P.BASHTRYKOV,J.STIEFELMAIER,T.P.JURKOWSKI,S.KUDITHIPUDI, JRNL AUTH 3 S.WEIRICH,R.TAMAS,H.WU,L.DOMBROVSKI,P.LOPPNAU,R.REINHARDT, JRNL AUTH 4 J.MIN,A.JELTSCH JRNL TITL H3K14AC IS LINKED TO METHYLATION OF H3K9 BY THE TRIPLE TUDOR JRNL TITL 2 DOMAIN OF SETDB1. JRNL REF NAT COMMUN V. 8 2057 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29234025 JRNL DOI 10.1038/S41467-017-02259-9 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2428 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1857 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1735 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2529 ; 1.662 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4024 ; 0.996 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.509 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;30.706 ;23.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;10.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2043 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 389 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 916 ; 2.650 ; 1.849 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 915 ; 2.563 ; 1.845 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1145 ; 3.049 ; 2.780 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3592 ; 2.185 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 148 ;26.859 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3656 ;13.059 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WE THANK AIPING DONG FOR COLLECTION OF REMARK 3 DIFFRACTION DATA. WATER SITES WERE PICKED WITH PHENIX. COOT WAS REMARK 3 USED FOR INTERACTIVE MODEL BUILDING. MODEL GEOMETRY WAS REMARK 3 EVALUATED WITH MOLPROBITY. UNINTERPRETED DENSITY IN THE AROMATIC REMARK 3 CAGE OF TUDOR DOMAIN THREE MAY HAVE ARISEN FROM THE K9 SIDE REMARK 3 CHAIN OF BOUND HISTONE PEPTIDE OR FROM THE R384 SIDE CHAIN OF REMARK 3 SETDB1. REMARK 4 REMARK 4 6BHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97944 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53270 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 41.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: EARLIER VERSION OF COORDINATES OF NEARLY REMARK 200 ISOMORPHOUS CRYSTAL STRUCTURE (SEE PDB ENTRY 6BHE) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG5000 MME, 0.1 M BIS-TRIS, PH REMARK 280 6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.18150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 ARG A 182 REMARK 465 GLU A 183 REMARK 465 ASN A 184 REMARK 465 LEU A 185 REMARK 465 TYR A 186 REMARK 465 PHE A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 271 REMARK 465 ASN A 272 REMARK 465 GLN A 273 REMARK 465 SER A 407 REMARK 465 ALA A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 ACE B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 GLN B 19 REMARK 465 NH2 B 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 194 CD CE NZ REMARK 470 ARG A 209 CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CD CE NZ REMARK 470 ASN A 236 CG OD1 ND2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 ASP A 270 CG OD1 OD2 REMARK 470 TRP A 275 CE3 CZ2 CZ3 CH2 REMARK 470 LYS A 288 CE NZ REMARK 470 LYS A 290 CE NZ REMARK 470 LYS A 349 CE NZ REMARK 470 LYS A 364 NZ REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 402 CE NZ REMARK 470 SER A 405 OG REMARK 470 ALA A 406 C O CB REMARK 470 SER B 10 OG REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 292 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 201 -11.21 100.30 REMARK 500 ASP A 250 57.05 -94.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 811 DISTANCE = 6.19 ANGSTROMS DBREF 6BHG A 190 410 UNP Q15047 SETB1_HUMAN 190 410 DBREF 6BHG B 4 19 UNP P68431 H31_HUMAN 5 20 SEQADV 6BHG MET A 172 UNP Q15047 EXPRESSION TAG SEQADV 6BHG HIS A 173 UNP Q15047 EXPRESSION TAG SEQADV 6BHG HIS A 174 UNP Q15047 EXPRESSION TAG SEQADV 6BHG HIS A 175 UNP Q15047 EXPRESSION TAG SEQADV 6BHG HIS A 176 UNP Q15047 EXPRESSION TAG SEQADV 6BHG HIS A 177 UNP Q15047 EXPRESSION TAG SEQADV 6BHG HIS A 178 UNP Q15047 EXPRESSION TAG SEQADV 6BHG SER A 179 UNP Q15047 EXPRESSION TAG SEQADV 6BHG SER A 180 UNP Q15047 EXPRESSION TAG SEQADV 6BHG GLY A 181 UNP Q15047 EXPRESSION TAG SEQADV 6BHG ARG A 182 UNP Q15047 EXPRESSION TAG SEQADV 6BHG GLU A 183 UNP Q15047 EXPRESSION TAG SEQADV 6BHG ASN A 184 UNP Q15047 EXPRESSION TAG SEQADV 6BHG LEU A 185 UNP Q15047 EXPRESSION TAG SEQADV 6BHG TYR A 186 UNP Q15047 EXPRESSION TAG SEQADV 6BHG PHE A 187 UNP Q15047 EXPRESSION TAG SEQADV 6BHG GLN A 188 UNP Q15047 EXPRESSION TAG SEQADV 6BHG GLY A 189 UNP Q15047 EXPRESSION TAG SEQADV 6BHG ACE B 3 UNP P68431 ACETYLATION SEQADV 6BHG NH2 B 20 UNP P68431 AMIDATION SEQRES 1 A 239 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 239 LEU TYR PHE GLN GLY GLY GLU LEU SER LYS ASP GLY ASP SEQRES 3 A 239 LEU ILE VAL SER MET ARG ILE LEU GLY LYS LYS ARG THR SEQRES 4 A 239 LYS THR TRP HIS LYS GLY THR LEU ILE ALA ILE GLN THR SEQRES 5 A 239 VAL GLY PRO GLY LYS LYS TYR LYS VAL LYS PHE ASP ASN SEQRES 6 A 239 LYS GLY LYS SER LEU LEU SER GLY ASN HIS ILE ALA TYR SEQRES 7 A 239 ASP TYR HIS PRO PRO ALA ASP LYS LEU TYR VAL GLY SER SEQRES 8 A 239 ARG VAL VAL ALA LYS TYR LYS ASP GLY ASN GLN VAL TRP SEQRES 9 A 239 LEU TYR ALA GLY ILE VAL ALA GLU THR PRO ASN VAL LYS SEQRES 10 A 239 ASN LYS LEU ARG PHE LEU ILE PHE PHE ASP ASP GLY TYR SEQRES 11 A 239 ALA SER TYR VAL THR GLN SER GLU LEU TYR PRO ILE CYS SEQRES 12 A 239 ARG PRO LEU LYS LYS THR TRP GLU ASP ILE GLU ASP ILE SEQRES 13 A 239 SER CYS ARG ASP PHE ILE GLU GLU TYR VAL THR ALA TYR SEQRES 14 A 239 PRO ASN ARG PRO MET VAL LEU LEU LYS SER GLY GLN LEU SEQRES 15 A 239 ILE LYS THR GLU TRP GLU GLY THR TRP TRP LYS SER ARG SEQRES 16 A 239 VAL GLU GLU VAL ASP GLY SER LEU VAL ARG ILE LEU PHE SEQRES 17 A 239 LEU ASP ASP LYS ARG CYS GLU TRP ILE TYR ARG GLY SER SEQRES 18 A 239 THR ARG LEU GLU PRO MET PHE SER MET LYS THR SER SER SEQRES 19 A 239 ALA SER ALA LEU GLU SEQRES 1 B 18 ACE LYS GLN THR ALA ARG LYS SER THR GLY GLY ALY ALA SEQRES 2 B 18 PRO ARG LYS GLN NH2 MODRES 6BHG ALY B 14 LYS MODIFIED RESIDUE HET ALY B 14 12 HET UNX A 501 1 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX A 515 1 HET UNX A 516 1 HET UNX A 517 1 HET UNX A 518 1 HET UNX A 519 1 HET UNX A 520 1 HET UNX A 521 1 HET UNX A 522 1 HET UNX A 523 1 HET UNX A 524 1 HET UNX A 525 1 HET UNX A 526 1 HET UNX A 527 1 HET UNX A 528 1 HET UNX A 529 1 HET UNX A 530 1 HET UNX A 531 1 HET UNX A 532 1 HET UNX A 533 1 HET UNX A 534 1 HET UNX A 535 1 HET UNX A 536 1 HET UNX A 537 1 HET UNX A 538 1 HET UNX A 539 1 HET UNX A 540 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 UNX 40(X) FORMUL 43 HOH *223(H2 O) HELIX 1 AA1 PRO A 254 LEU A 258 5 5 HELIX 2 AA2 ASN A 286 LYS A 290 5 5 HELIX 3 AA3 THR A 306 SER A 308 5 3 HELIX 4 AA4 LYS A 319 ILE A 324 5 6 HELIX 5 AA5 ASP A 326 TYR A 340 1 15 HELIX 6 AA6 LEU A 395 SER A 404 1 10 SHEET 1 AA1 4 GLU A 191 LEU A 192 0 SHEET 2 AA1 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA1 4 GLY A 227 PHE A 234 -1 O LYS A 231 N ILE A 219 SHEET 4 AA1 4 LYS A 239 SER A 243 -1 O LEU A 242 N TYR A 230 SHEET 1 AA2 4 GLU A 191 LEU A 192 0 SHEET 2 AA2 4 TRP A 213 VAL A 224 -1 O ILE A 221 N LEU A 192 SHEET 3 AA2 4 ARG A 203 LYS A 207 -1 N ILE A 204 O GLY A 216 SHEET 4 AA2 4 ILE A 247 TYR A 249 -1 O ALA A 248 N LEU A 205 SHEET 1 AA3 2 LYS A 194 ASP A 195 0 SHEET 2 AA3 2 LEU A 198 ILE A 199 -1 O LEU A 198 N ASP A 195 SHEET 1 AA4 5 ALA A 302 VAL A 305 0 SHEET 2 AA4 5 PHE A 293 PHE A 297 -1 N ILE A 295 O SER A 303 SHEET 3 AA4 5 TRP A 275 GLU A 283 -1 N ALA A 282 O LEU A 294 SHEET 4 AA4 5 ARG A 263 TYR A 268 -1 N TYR A 268 O TRP A 275 SHEET 5 AA4 5 LEU A 310 PRO A 312 -1 O TYR A 311 N VAL A 265 SHEET 1 AA5 4 LEU A 353 TRP A 358 0 SHEET 2 AA5 4 THR A 361 ASP A 371 -1 O TRP A 363 N THR A 356 SHEET 3 AA5 4 LEU A 374 PHE A 379 -1 O LEU A 378 N ARG A 366 SHEET 4 AA5 4 CYS A 385 TYR A 389 -1 O GLU A 386 N ILE A 377 LINK C GLY B 13 N ALY B 14 1555 1555 1.32 LINK C ALY B 14 N ALA B 15 1555 1555 1.33 CISPEP 1 TYR A 340 PRO A 341 0 13.01 CRYST1 37.709 72.363 52.501 90.00 104.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026519 0.000000 0.006982 0.00000 SCALE2 0.000000 0.013819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019696 0.00000