HEADER SIGNALING PROTEIN 31-OCT-17 6BHO TITLE GREEN LIGHT-ABSORBING STATE OF NPR6012G4, A RED/GREEN TITLE 2 CYANOBACTERIOCHROME COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS SENSORY TRANSDUCER WITH COMPND 3 PHYTOCHROME SENSOR; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME PCC 73102; SOURCE 3 ORGANISM_TAXID: 63737; SOURCE 4 STRAIN: ATCC 29133 / PCC 73102; SOURCE 5 GENE: NPUN_R6012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBCR, PHYTOCHROME, BILIN, CYANOBACTERIA, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.LIM,Q.YU,N.C.ROCKWELL,S.S.MARTIN,J.C.LAGARIAS,J.B.AMES REVDAT 5 23-OCT-24 6BHO 1 REMARK REVDAT 4 04-DEC-19 6BHO 1 REMARK REVDAT 3 09-MAY-18 6BHO 1 SOURCE JRNL REVDAT 2 25-APR-18 6BHO 1 JRNL REVDAT 1 18-APR-18 6BHO 0 JRNL AUTH S.LIM,Q.YU,S.M.GOTTLIEB,C.W.CHANG,N.C.ROCKWELL,S.S.MARTIN, JRNL AUTH 2 D.MADSEN,J.C.LAGARIAS,D.S.LARSEN,J.B.AMES JRNL TITL CORRELATING STRUCTURAL AND PHOTOCHEMICAL HETEROGENEITY IN JRNL TITL 2 CYANOBACTERIOCHROME NPR6012G4. JRNL REF PROC. NATL. ACAD. SCI. V. 115 4387 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29632180 JRNL DOI 10.1073/PNAS.1720682115 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.LIM,Q.YU,N.C.ROCKWELL,S.S.MARTIN,J.C.LAGARIAS,J.B.AMES REMARK 1 TITL 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS OF REMARK 1 TITL 2 CYANOBACTERIOCHROME NPR6012G4 IN THE GREEN-ABSORBING REMARK 1 TITL 3 PHOTOPRODUCT STATE. REMARK 1 REF BIOMOL NMR ASSIGN V. 10 157 2016 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 26537963 REMARK 1 DOI 10.1007/S12104-015-9657-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.44 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPLICIT WATER REFINEMENT REMARK 4 REMARK 4 6BHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230799. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 49 REMARK 210 PRESSURE : 1013 MBAR REMARK 210 SAMPLE CONTENTS : 20 MM N.A. SODIUM PHOSPHATE, 95% REMARK 210 H2O/5% D2O; 20 MM N.A. POTASSIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 20 MM REMARK 210 N.A. POTASSIUM PHOSPHATE, 12 MM REMARK 210 N.A. PF1 PHAGE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HNCACO; 3D HBHA(CO)NH; 3D 15N REMARK 210 TOCSY-HSQC; 3D 15N NOESY-HSQC; REMARK 210 3D HCCH-TOCSY; 2D 15N IPAP-HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D (HB) REMARK 210 CB(CGCD)HD; 2D (HB)CB(CGCDCE)HE; REMARK 210 3D 13C NOESY HSQC; 3D 13C,15N REMARK 210 FILTERED/EDITED HSQC-NOESY; 3D REMARK 210 13C,15N FILTERED/EDITED NOESY- REMARK 210 HSQC; 2D FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 8.9, SPARKY 3.12 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 583 REMARK 465 GLY A 584 REMARK 465 GLU A 585 REMARK 465 LYS A 586 REMARK 465 ALA A 587 REMARK 465 VAL A 588 REMARK 465 THR A 589 REMARK 465 LYS A 590 REMARK 465 ILE A 591 REMARK 465 SER A 592 REMARK 465 ASN A 593 REMARK 465 ARG A 594 REMARK 465 ILE A 595 REMARK 465 ARG A 596 REMARK 465 GLN A 597 REMARK 465 SER A 598 REMARK 465 GLN A 755 REMARK 465 GLY A 756 REMARK 465 GLN A 757 REMARK 465 SER A 758 REMARK 465 ALA A 759 REMARK 465 LYS A 760 REMARK 465 PRO A 761 REMARK 465 GLY A 762 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 688 O2D CYC A 800 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 643 -169.15 -117.98 REMARK 500 1 GLN A 719 98.68 -177.46 REMARK 500 1 ASN A 720 50.19 21.96 REMARK 500 1 THR A 723 45.02 -83.78 REMARK 500 1 GLN A 753 179.06 59.93 REMARK 500 2 VAL A 647 38.17 -87.87 REMARK 500 2 GLN A 719 100.28 -160.52 REMARK 500 2 ASN A 720 73.66 23.25 REMARK 500 2 SER A 721 -72.59 93.83 REMARK 500 2 THR A 723 43.55 -74.49 REMARK 500 3 ASP A 678 126.52 -175.13 REMARK 500 3 GLN A 710 -151.51 -163.76 REMARK 500 3 GLN A 719 99.97 -161.68 REMARK 500 3 ASN A 720 63.16 22.84 REMARK 500 3 SER A 721 -73.54 69.61 REMARK 500 3 ARG A 724 -56.04 70.93 REMARK 500 4 VAL A 647 45.10 -81.81 REMARK 500 4 ASP A 678 139.46 -171.08 REMARK 500 4 ASN A 720 73.71 22.20 REMARK 500 4 SER A 721 -63.33 82.87 REMARK 500 4 THR A 723 44.78 -71.83 REMARK 500 5 VAL A 635 -33.97 -131.70 REMARK 500 5 ALA A 707 97.77 -162.37 REMARK 500 5 GLN A 710 -103.41 65.43 REMARK 500 5 GLN A 719 101.52 -166.11 REMARK 500 5 ASN A 720 53.69 26.78 REMARK 500 5 SER A 721 -70.07 72.01 REMARK 500 5 ARG A 724 -54.25 70.05 REMARK 500 5 GLN A 753 -77.73 65.27 REMARK 500 6 VAL A 635 -42.32 -139.94 REMARK 500 6 LEU A 646 -130.03 -132.05 REMARK 500 6 GLU A 709 30.77 -79.18 REMARK 500 6 GLN A 710 -86.24 65.49 REMARK 500 6 GLN A 719 95.61 -163.39 REMARK 500 6 ASN A 720 36.03 22.91 REMARK 500 6 ARG A 724 -71.68 67.55 REMARK 500 7 VAL A 635 -51.26 -130.21 REMARK 500 7 ARG A 667 -71.39 -37.91 REMARK 500 7 GLU A 709 36.21 -80.73 REMARK 500 7 GLN A 710 -88.53 72.56 REMARK 500 7 ASN A 720 66.59 23.10 REMARK 500 7 THR A 723 42.74 -73.52 REMARK 500 7 GLN A 753 89.93 60.95 REMARK 500 8 VAL A 647 71.44 -108.93 REMARK 500 8 ASP A 678 126.49 -172.03 REMARK 500 8 GLU A 709 34.71 -76.63 REMARK 500 8 GLN A 710 -88.35 70.69 REMARK 500 8 ASN A 720 69.66 24.16 REMARK 500 8 SER A 721 -58.20 76.62 REMARK 500 8 THR A 723 43.32 -76.20 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYC A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26577 RELATED DB: BMRB REMARK 900 RELATED ID: 6BHN RELATED DB: PDB DBREF 6BHO A 585 760 UNP B2IU14 B2IU14_NOSP7 585 760 SEQADV 6BHO MET A 583 UNP B2IU14 INITIATING METHIONINE SEQADV 6BHO GLY A 584 UNP B2IU14 EXPRESSION TAG SEQADV 6BHO PRO A 761 UNP B2IU14 EXPRESSION TAG SEQADV 6BHO GLY A 762 UNP B2IU14 EXPRESSION TAG SEQRES 1 A 180 MET GLY GLU LYS ALA VAL THR LYS ILE SER ASN ARG ILE SEQRES 2 A 180 ARG GLN SER SER ASP VAL GLU GLU ILE PHE LYS THR THR SEQRES 3 A 180 THR GLN GLU VAL ARG GLN LEU LEU ARG CYS ASP ARG VAL SEQRES 4 A 180 ALA VAL TYR ARG PHE ASN PRO ASN TRP THR GLY GLU PHE SEQRES 5 A 180 VAL ALA GLU SER VAL ALA HIS THR TRP VAL LYS LEU VAL SEQRES 6 A 180 GLY PRO ASP ILE LYS THR VAL TRP GLU ASP THR HIS LEU SEQRES 7 A 180 GLN GLU THR GLN GLY GLY ARG TYR ALA GLN GLY GLU ASN SEQRES 8 A 180 PHE VAL VAL ASN ASP ILE TYR GLN VAL GLY HIS SER PRO SEQRES 9 A 180 CYS HIS ILE GLU ILE LEU GLU GLN PHE GLU VAL LYS ALA SEQRES 10 A 180 TYR VAL ILE VAL PRO VAL PHE ALA GLY GLU GLN LEU TRP SEQRES 11 A 180 GLY LEU LEU ALA ALA TYR GLN ASN SER GLY THR ARG ASP SEQRES 12 A 180 TRP ASP GLU SER GLU VAL THR LEU LEU ALA ARG ILE GLY SEQRES 13 A 180 ASN GLN LEU GLY LEU ALA LEU GLN GLN THR GLU TYR LEU SEQRES 14 A 180 GLN GLN VAL GLN GLY GLN SER ALA LYS PRO GLY HET CYC A 800 81 HETNAM CYC PHYCOCYANOBILIN FORMUL 2 CYC C33 H40 N4 O6 HELIX 1 AA1 SER A 599 LEU A 616 1 18 HELIX 2 AA2 HIS A 659 GLN A 664 1 6 HELIX 3 AA3 GLY A 665 GLY A 671 1 7 HELIX 4 AA4 ASP A 678 GLY A 683 1 6 HELIX 5 AA5 SER A 685 PHE A 695 1 11 HELIX 6 AA6 ASP A 727 GLN A 753 1 27 SHEET 1 AA1 5 GLU A 633 VAL A 639 0 SHEET 2 AA1 5 ARG A 620 ARG A 625 -1 N VAL A 623 O ALA A 636 SHEET 3 AA1 5 GLN A 710 TYR A 718 -1 O ALA A 716 N ALA A 622 SHEET 4 AA1 5 TYR A 700 ALA A 707 -1 N VAL A 705 O GLY A 713 SHEET 5 AA1 5 PHE A 674 VAL A 676 -1 N PHE A 674 O ILE A 702 LINK SG CYS A 687 CAC CYC A 800 1555 1555 1.83 SITE 1 AC1 11 TYR A 624 ASP A 657 HIS A 659 TYR A 668 SITE 2 AC1 11 HIS A 684 SER A 685 CYS A 687 HIS A 688 SITE 3 AC1 11 ILE A 691 PHE A 695 TYR A 700 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1