HEADER OXIDOREDUCTASE 02-NOV-17 6BII TITLE CRYSTAL STRUCTURE OF PYROCOCCUS YAYANOSII GLYOXYLATE HYDROXYPYRUVATE TITLE 2 REDUCTASE IN COMPLEX WITH NADP AND MALONATE (RE-REFINEMENT OF 5AOW) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.26; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS YAYANOSII (STRAIN CH1 / JCM 16557); SOURCE 3 ORGANISM_TAXID: 529709; SOURCE 4 STRAIN: CH1 / JCM 16557; SOURCE 5 GENE: GYAR, PYCH_09300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET41 KEYWDS HYDROXYPYRUVATE, REDUCTASE, GHRB, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LASSALLE,I.G.SHABALIN,E.GIRARD,W.MINOR REVDAT 5 04-OCT-23 6BII 1 REMARK REVDAT 4 16-MAY-18 6BII 1 JRNL REVDAT 3 28-FEB-18 6BII 1 JRNL REVDAT 2 31-JAN-18 6BII 1 JRNL REVDAT 1 17-JAN-18 6BII 0 SPRSDE 17-JAN-18 6BII 5AOW JRNL AUTH L.LASSALLE,S.ENGILBERGE,D.MADERN,P.VAUCLARE,B.FRANZETTI, JRNL AUTH 2 E.GIRARD JRNL TITL NEW INSIGHTS INTO THE MECHANISM OF SUBSTRATES TRAFFICKING IN JRNL TITL 2 GLYOXYLATE/HYDROXYPYRUVATE REDUCTASES. JRNL REF SCI REP V. 6 20629 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26865263 JRNL DOI 10.1038/SREP20629 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.KUTNER,I.G.SHABALIN,D.MATELSKA,K.B.HANDING,O.GASIOROWSKA, REMARK 1 AUTH 2 P.SROKA,M.W.GORNA,K.GINALSKI,K.WOZNIAK,W.MINOR REMARK 1 TITL STRUCTURAL, BIOCHEMICAL, AND EVOLUTIONARY CHARACTERIZATIONS REMARK 1 TITL 2 OF GLYOXYLATE/HYDROXYPYRUVATE REDUCTASES SHOW THEIR DIVISION REMARK 1 TITL 3 INTO TWO DISTINCT SUBFAMILIES. REMARK 1 REF BIOCHEMISTRY V. 57 963 2018 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 29309127 REMARK 1 DOI 10.1021/ACS.BIOCHEM.7B01137 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 97977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 369 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5510 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5327 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7477 ; 1.521 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12264 ; 0.969 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 6.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;35.767 ;23.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 944 ;13.304 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;17.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6005 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1150 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 333 B 2 333 21184 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 83.1220 31.5660 24.3490 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.1485 REMARK 3 T33: 0.1172 T12: -0.0166 REMARK 3 T13: -0.0409 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 2.5339 L22: 4.3840 REMARK 3 L33: 3.3598 L12: -0.3640 REMARK 3 L13: -0.1840 L23: 1.1087 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.2587 S13: 0.1607 REMARK 3 S21: 0.2075 S22: 0.0964 S23: -0.2389 REMARK 3 S31: -0.2220 S32: 0.4158 S33: -0.0980 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 80.3740 42.7010 15.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.2839 T22: 0.0804 REMARK 3 T33: 0.1519 T12: -0.0401 REMARK 3 T13: -0.0470 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 9.8927 L22: 15.0111 REMARK 3 L33: 14.2025 L12: 1.5697 REMARK 3 L13: -5.6160 L23: 2.7542 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: 0.0880 S13: 0.6241 REMARK 3 S21: -0.1742 S22: 0.1280 S23: -0.1285 REMARK 3 S31: -0.4504 S32: 0.1660 S33: -0.2037 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 55.1130 21.0260 21.6720 REMARK 3 T TENSOR REMARK 3 T11: 0.2345 T22: 0.0584 REMARK 3 T33: 0.0637 T12: 0.0868 REMARK 3 T13: -0.0067 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.6387 L22: 0.6532 REMARK 3 L33: 0.8270 L12: 0.0595 REMARK 3 L13: -0.0713 L23: 0.0138 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.0476 S13: 0.0397 REMARK 3 S21: 0.0049 S22: 0.0389 S23: 0.0643 REMARK 3 S31: -0.1072 S32: -0.1592 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 47.8230 27.4370 13.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.2745 T22: 0.1175 REMARK 3 T33: 0.0685 T12: 0.1112 REMARK 3 T13: -0.0293 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.8761 L22: 1.4730 REMARK 3 L33: 1.6034 L12: 0.5145 REMARK 3 L13: 0.2045 L23: 0.1907 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.1698 S13: 0.1640 REMARK 3 S21: -0.2215 S22: 0.0236 S23: 0.1367 REMARK 3 S31: -0.1715 S32: -0.2184 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 49.2850 33.6720 25.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.2424 T22: 0.0887 REMARK 3 T33: 0.0801 T12: 0.0820 REMARK 3 T13: -0.0259 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 7.8505 L22: 2.0721 REMARK 3 L33: 2.5971 L12: -0.6813 REMARK 3 L13: -2.9263 L23: -0.5881 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.1337 S13: 0.4924 REMARK 3 S21: 0.0941 S22: 0.0452 S23: 0.0373 REMARK 3 S31: -0.3954 S32: -0.1502 S33: -0.0705 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 70.9700 27.6100 18.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.0295 REMARK 3 T33: 0.0504 T12: 0.0248 REMARK 3 T13: -0.0396 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.1935 L22: 0.5898 REMARK 3 L33: 2.0637 L12: 0.0623 REMARK 3 L13: -1.3419 L23: 0.0275 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: 0.0077 S13: 0.1671 REMARK 3 S21: -0.0472 S22: 0.0827 S23: -0.0623 REMARK 3 S31: -0.2155 S32: 0.0650 S33: -0.0234 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 30 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0500 5.8960 38.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.3967 REMARK 3 T33: 0.6387 T12: 0.0193 REMARK 3 T13: 0.0923 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.4433 L22: 5.8801 REMARK 3 L33: 3.2235 L12: 1.8451 REMARK 3 L13: 0.8054 L23: 0.9770 REMARK 3 S TENSOR REMARK 3 S11: -0.1663 S12: -0.0327 S13: -0.0132 REMARK 3 S21: -0.0365 S22: -0.0676 S23: 1.1742 REMARK 3 S31: -0.0870 S32: -0.7247 S33: 0.2339 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6710 -2.4870 47.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.3976 T22: 0.3877 REMARK 3 T33: 0.4594 T12: 0.0255 REMARK 3 T13: 0.2148 T23: 0.0811 REMARK 3 L TENSOR REMARK 3 L11: 3.5710 L22: 4.3350 REMARK 3 L33: 4.7599 L12: 0.1152 REMARK 3 L13: -0.2115 L23: -0.0446 REMARK 3 S TENSOR REMARK 3 S11: -0.2291 S12: -0.4394 S13: -0.4441 REMARK 3 S21: 0.5841 S22: 0.0646 S23: 0.6844 REMARK 3 S31: 0.2701 S32: -0.4312 S33: 0.1646 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4010 6.8520 31.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.0884 REMARK 3 T33: 0.0538 T12: 0.0808 REMARK 3 T13: 0.0245 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.8749 L22: 1.4553 REMARK 3 L33: 0.9311 L12: -0.3303 REMARK 3 L13: -0.2071 L23: 0.1512 REMARK 3 S TENSOR REMARK 3 S11: -0.0316 S12: -0.0738 S13: -0.1816 REMARK 3 S21: 0.0996 S22: 0.0218 S23: 0.1011 REMARK 3 S31: 0.0475 S32: -0.1146 S33: 0.0098 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 181 B 240 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5750 -5.4430 32.0630 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.0608 REMARK 3 T33: 0.1157 T12: 0.0631 REMARK 3 T13: 0.0158 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.2987 L22: 2.2085 REMARK 3 L33: 2.1713 L12: -0.2590 REMARK 3 L13: -0.6931 L23: 0.3470 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0060 S13: -0.2030 REMARK 3 S21: 0.0456 S22: 0.0217 S23: 0.0757 REMARK 3 S31: 0.2395 S32: -0.0963 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 241 B 269 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5090 2.9180 44.0550 REMARK 3 T TENSOR REMARK 3 T11: 0.2692 T22: 0.1144 REMARK 3 T33: 0.0898 T12: 0.0694 REMARK 3 T13: 0.0247 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 10.0087 L22: 3.1103 REMARK 3 L33: 1.8422 L12: 1.1481 REMARK 3 L13: 0.4644 L23: -0.3704 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.6796 S13: -0.1316 REMARK 3 S21: 0.4649 S22: -0.0296 S23: -0.0637 REMARK 3 S31: 0.1097 S32: -0.0406 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 270 B 333 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9450 0.6000 35.7850 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.1985 REMARK 3 T33: 0.3066 T12: 0.0239 REMARK 3 T13: 0.0947 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.0516 L22: 2.4635 REMARK 3 L33: 1.6229 L12: 0.2928 REMARK 3 L13: -0.0061 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.1367 S12: 0.0669 S13: -0.3811 REMARK 3 S21: 0.0312 S22: 0.0812 S23: 0.5911 REMARK 3 S31: 0.2332 S32: -0.4541 S33: 0.0554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6BII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979637 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRISTAL REMARK 200 OPTICS : MIRROR M1 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : 1.88000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 MALONATE (HAMPTON), PH 7.0. 1 ML REMARK 280 OF MOTHER LIQUOR WAS PLACED IN THE WELL OF THE CRYSTALLIZATION REMARK 280 PLATE AND THE DROP WAS FORMED BY MIXING 1.5 UL OF PROTEIN REMARK 280 SOLUTION AT 10 MG/ML AND 1.5 UL OF MOTHER LIQUOR, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 173.86133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.93067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 173.86133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.93067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 173.86133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.93067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 173.86133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 86.93067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 570 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 LYS A 141 CD CE NZ REMARK 470 LYS A 189 CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 LYS B 44 CD CE NZ REMARK 470 ARG B 59 NE CZ NH1 NH2 REMARK 470 LYS B 189 CE NZ REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 GLU B 324 CD OE1 OE2 REMARK 470 ARG B 330 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 75 149.68 179.96 REMARK 500 TYR A 78 24.06 -140.98 REMARK 500 ASP A 98 -50.47 75.72 REMARK 500 ALA A 211 44.75 -146.14 REMARK 500 ALA A 240 -97.13 -93.56 REMARK 500 ALA B 75 148.98 178.36 REMARK 500 TYR B 78 24.71 -141.87 REMARK 500 ASP B 98 -52.72 76.44 REMARK 500 ALA B 211 45.23 -145.32 REMARK 500 ASN B 223 -169.04 -108.86 REMARK 500 ALA B 240 -97.46 -94.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 909 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 DBREF 6BII A 1 333 UNP F8AEA4 F8AEA4_PYRYC 1 333 DBREF 6BII B 1 333 UNP F8AEA4 F8AEA4_PYRYC 1 333 SEQRES 1 A 333 MET LYS PRO LYS VAL LEU ILE THR ARG ALA ILE PRO GLU SEQRES 2 A 333 ASN GLY ILE GLU LEU LEU ARG GLU HIS PHE GLU VAL GLU SEQRES 3 A 333 VAL TRP GLU HIS GLU HIS GLU ILE PRO ARG GLU VAL LEU SEQRES 4 A 333 LEU GLU LYS VAL LYS ASP VAL ASP ALA LEU VAL THR MET SEQRES 5 A 333 LEU SER GLU LYS ILE ASP ARG GLU VAL PHE ASP ALA ALA SEQRES 6 A 333 PRO ARG LEU ARG ILE VAL ALA ASN TYR ALA VAL GLY TYR SEQRES 7 A 333 ASP ASN ILE ASP ILE GLU GLU ALA THR LYS ARG GLY ILE SEQRES 8 A 333 TYR VAL THR ASN THR PRO ASP VAL LEU THR ASP ALA THR SEQRES 9 A 333 ALA ASP LEU ALA TRP ALA LEU LEU LEU ALA ALA ALA ARG SEQRES 10 A 333 HIS VAL VAL LYS GLY ASP LYS PHE VAL ARG SER GLY GLU SEQRES 11 A 333 TRP LYS ARG ARG GLY ILE ALA TRP HIS PRO LYS MET PHE SEQRES 12 A 333 LEU GLY TYR ASP VAL TYR GLY LYS THR ILE GLY ILE VAL SEQRES 13 A 333 GLY PHE GLY ARG ILE GLY GLN ALA ILE ALA LYS ARG ALA SEQRES 14 A 333 LYS GLY PHE GLY MET ARG ILE LEU TYR THR ALA ARG SER SEQRES 15 A 333 ARG LYS PRO GLU ALA GLU LYS GLU LEU GLY ALA GLU PHE SEQRES 16 A 333 LYS PRO LEU GLU GLU LEU LEU ARG GLU SER ASP PHE VAL SEQRES 17 A 333 VAL LEU ALA VAL PRO LEU THR LYS GLU THR TYR HIS MET SEQRES 18 A 333 ILE ASN GLU GLU ARG LEU ARG LEU MET LYS PRO THR ALA SEQRES 19 A 333 VAL LEU VAL ASN VAL ALA ARG GLY LYS VAL VAL ASP THR SEQRES 20 A 333 LYS ALA LEU ILE ARG ALA LEU LYS GLU GLY TRP ILE ALA SEQRES 21 A 333 ALA ALA GLY LEU ASP VAL PHE GLU GLU GLU PRO TYR TYR SEQRES 22 A 333 ASP GLU GLU LEU PHE ALA LEU ASP ASN VAL VAL LEU THR SEQRES 23 A 333 PRO HIS ILE GLY SER ALA THR PHE GLY ALA ARG GLU GLY SEQRES 24 A 333 MET ALA GLU LEU VAL ALA LYS ASN LEU ILE ALA PHE LYS SEQRES 25 A 333 ASN GLY GLU VAL PRO PRO THR LEU VAL ASN ARG GLU VAL SEQRES 26 A 333 LEU LYS VAL ARG ARG PRO GLY PHE SEQRES 1 B 333 MET LYS PRO LYS VAL LEU ILE THR ARG ALA ILE PRO GLU SEQRES 2 B 333 ASN GLY ILE GLU LEU LEU ARG GLU HIS PHE GLU VAL GLU SEQRES 3 B 333 VAL TRP GLU HIS GLU HIS GLU ILE PRO ARG GLU VAL LEU SEQRES 4 B 333 LEU GLU LYS VAL LYS ASP VAL ASP ALA LEU VAL THR MET SEQRES 5 B 333 LEU SER GLU LYS ILE ASP ARG GLU VAL PHE ASP ALA ALA SEQRES 6 B 333 PRO ARG LEU ARG ILE VAL ALA ASN TYR ALA VAL GLY TYR SEQRES 7 B 333 ASP ASN ILE ASP ILE GLU GLU ALA THR LYS ARG GLY ILE SEQRES 8 B 333 TYR VAL THR ASN THR PRO ASP VAL LEU THR ASP ALA THR SEQRES 9 B 333 ALA ASP LEU ALA TRP ALA LEU LEU LEU ALA ALA ALA ARG SEQRES 10 B 333 HIS VAL VAL LYS GLY ASP LYS PHE VAL ARG SER GLY GLU SEQRES 11 B 333 TRP LYS ARG ARG GLY ILE ALA TRP HIS PRO LYS MET PHE SEQRES 12 B 333 LEU GLY TYR ASP VAL TYR GLY LYS THR ILE GLY ILE VAL SEQRES 13 B 333 GLY PHE GLY ARG ILE GLY GLN ALA ILE ALA LYS ARG ALA SEQRES 14 B 333 LYS GLY PHE GLY MET ARG ILE LEU TYR THR ALA ARG SER SEQRES 15 B 333 ARG LYS PRO GLU ALA GLU LYS GLU LEU GLY ALA GLU PHE SEQRES 16 B 333 LYS PRO LEU GLU GLU LEU LEU ARG GLU SER ASP PHE VAL SEQRES 17 B 333 VAL LEU ALA VAL PRO LEU THR LYS GLU THR TYR HIS MET SEQRES 18 B 333 ILE ASN GLU GLU ARG LEU ARG LEU MET LYS PRO THR ALA SEQRES 19 B 333 VAL LEU VAL ASN VAL ALA ARG GLY LYS VAL VAL ASP THR SEQRES 20 B 333 LYS ALA LEU ILE ARG ALA LEU LYS GLU GLY TRP ILE ALA SEQRES 21 B 333 ALA ALA GLY LEU ASP VAL PHE GLU GLU GLU PRO TYR TYR SEQRES 22 B 333 ASP GLU GLU LEU PHE ALA LEU ASP ASN VAL VAL LEU THR SEQRES 23 B 333 PRO HIS ILE GLY SER ALA THR PHE GLY ALA ARG GLU GLY SEQRES 24 B 333 MET ALA GLU LEU VAL ALA LYS ASN LEU ILE ALA PHE LYS SEQRES 25 B 333 ASN GLY GLU VAL PRO PRO THR LEU VAL ASN ARG GLU VAL SEQRES 26 B 333 LEU LYS VAL ARG ARG PRO GLY PHE HET NAP A 401 48 HET MLI A 402 7 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET NAP B 401 48 HET MLI B 402 7 HET GOL B 403 6 HET GOL B 404 6 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM MLI MALONATE ION HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 MLI 2(C3 H2 O4 2-) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 12 HOH *710(H2 O) HELIX 1 AA1 PRO A 12 GLU A 21 1 10 HELIX 2 AA2 PRO A 35 VAL A 43 1 9 HELIX 3 AA3 LYS A 44 VAL A 46 5 3 HELIX 4 AA4 ASP A 58 ALA A 65 1 8 HELIX 5 AA5 ASP A 82 ARG A 89 1 8 HELIX 6 AA6 LEU A 100 HIS A 118 1 19 HELIX 7 AA7 HIS A 118 SER A 128 1 11 HELIX 8 AA8 GLY A 129 GLY A 135 1 7 HELIX 9 AA9 GLY A 159 PHE A 172 1 14 HELIX 10 AB1 LYS A 184 GLY A 192 1 9 HELIX 11 AB2 PRO A 197 SER A 205 1 9 HELIX 12 AB3 ASN A 223 MET A 230 1 8 HELIX 13 AB4 ARG A 241 VAL A 245 5 5 HELIX 14 AB5 ASP A 246 GLU A 256 1 11 HELIX 15 AB6 ASP A 274 ALA A 279 1 6 HELIX 16 AB7 THR A 293 ASN A 313 1 21 HELIX 17 AB8 ASN A 322 VAL A 328 5 7 HELIX 18 AB9 PRO B 12 GLU B 21 1 10 HELIX 19 AC1 PRO B 35 VAL B 43 1 9 HELIX 20 AC2 LYS B 44 VAL B 46 5 3 HELIX 21 AC3 ASP B 58 ALA B 65 1 8 HELIX 22 AC4 ASP B 82 ARG B 89 1 8 HELIX 23 AC5 LEU B 100 HIS B 118 1 19 HELIX 24 AC6 HIS B 118 SER B 128 1 11 HELIX 25 AC7 GLY B 129 GLY B 135 1 7 HELIX 26 AC8 GLY B 159 PHE B 172 1 14 HELIX 27 AC9 LYS B 184 GLY B 192 1 9 HELIX 28 AD1 PRO B 197 SER B 205 1 9 HELIX 29 AD2 ASN B 223 MET B 230 1 8 HELIX 30 AD3 ARG B 241 VAL B 245 5 5 HELIX 31 AD4 ASP B 246 GLY B 257 1 12 HELIX 32 AD5 ASP B 274 ALA B 279 1 6 HELIX 33 AD6 THR B 293 ASN B 313 1 21 HELIX 34 AD7 ASN B 322 VAL B 328 5 7 SHEET 1 AA1 5 GLU A 24 VAL A 27 0 SHEET 2 AA1 5 LYS A 4 ILE A 7 1 N ILE A 7 O GLU A 26 SHEET 3 AA1 5 ALA A 48 THR A 51 1 O VAL A 50 N LEU A 6 SHEET 4 AA1 5 ILE A 70 ASN A 73 1 O ALA A 72 N LEU A 49 SHEET 5 AA1 5 TYR A 92 THR A 94 1 O THR A 94 N ASN A 73 SHEET 1 AA2 7 ALA A 193 PHE A 195 0 SHEET 2 AA2 7 ARG A 175 THR A 179 1 N ILE A 176 O GLU A 194 SHEET 3 AA2 7 THR A 152 VAL A 156 1 N ILE A 153 O LEU A 177 SHEET 4 AA2 7 PHE A 207 LEU A 210 1 O PHE A 207 N GLY A 154 SHEET 5 AA2 7 VAL A 235 ASN A 238 1 O VAL A 237 N VAL A 208 SHEET 6 AA2 7 ALA A 261 LEU A 264 1 O GLY A 263 N LEU A 236 SHEET 7 AA2 7 VAL A 283 LEU A 285 1 O VAL A 284 N LEU A 264 SHEET 1 AA3 5 GLU B 24 VAL B 27 0 SHEET 2 AA3 5 LYS B 4 ILE B 7 1 N ILE B 7 O GLU B 26 SHEET 3 AA3 5 ALA B 48 THR B 51 1 O VAL B 50 N LEU B 6 SHEET 4 AA3 5 ILE B 70 ASN B 73 1 O ALA B 72 N LEU B 49 SHEET 5 AA3 5 TYR B 92 THR B 94 1 O THR B 94 N ASN B 73 SHEET 1 AA4 7 ALA B 193 PHE B 195 0 SHEET 2 AA4 7 ARG B 175 THR B 179 1 N ILE B 176 O GLU B 194 SHEET 3 AA4 7 THR B 152 VAL B 156 1 N ILE B 153 O LEU B 177 SHEET 4 AA4 7 PHE B 207 LEU B 210 1 O PHE B 207 N GLY B 154 SHEET 5 AA4 7 VAL B 235 ASN B 238 1 O VAL B 237 N VAL B 208 SHEET 6 AA4 7 ALA B 261 LEU B 264 1 O GLY B 263 N ASN B 238 SHEET 7 AA4 7 VAL B 283 LEU B 285 1 O VAL B 284 N LEU B 264 CISPEP 1 GLU A 270 PRO A 271 0 -3.54 CISPEP 2 GLU B 270 PRO B 271 0 -6.55 SITE 1 AC1 39 VAL A 76 THR A 104 GLY A 157 PHE A 158 SITE 2 AC1 39 GLY A 159 ARG A 160 ILE A 161 ALA A 180 SITE 3 AC1 39 ARG A 181 SER A 182 LYS A 184 ALA A 211 SITE 4 AC1 39 VAL A 212 PRO A 213 GLU A 217 THR A 218 SITE 5 AC1 39 VAL A 239 ALA A 240 ARG A 241 ASP A 265 SITE 6 AC1 39 HIS A 288 GLY A 290 SER A 291 MLI A 402 SITE 7 AC1 39 HOH A 521 HOH A 531 HOH A 566 HOH A 574 SITE 8 AC1 39 HOH A 577 HOH A 580 HOH A 597 HOH A 604 SITE 9 AC1 39 HOH A 605 HOH A 614 HOH A 620 HOH A 623 SITE 10 AC1 39 HOH A 673 HOH A 676 HOH A 687 SITE 1 AC2 11 LEU A 53 ALA A 75 VAL A 76 GLY A 77 SITE 2 AC2 11 LEU A 100 ARG A 241 HIS A 288 NAP A 401 SITE 3 AC2 11 HOH A 516 HOH A 673 TRP B 138 SITE 1 AC3 7 TYR A 78 ASN A 95 ARG A 160 HOH A 570 SITE 2 AC3 7 HOH A 574 HOH A 657 HOH A 716 SITE 1 AC4 4 HIS A 30 GLU A 31 HIS A 32 HOH A 690 SITE 1 AC5 6 GLN A 163 LYS A 184 PRO A 185 GLU A 186 SITE 2 AC5 6 ALA A 187 HOH A 727 SITE 1 AC6 37 VAL B 76 THR B 104 GLY B 157 PHE B 158 SITE 2 AC6 37 GLY B 159 ARG B 160 ILE B 161 ALA B 180 SITE 3 AC6 37 ARG B 181 SER B 182 LYS B 184 ALA B 211 SITE 4 AC6 37 VAL B 212 PRO B 213 THR B 218 VAL B 239 SITE 5 AC6 37 ALA B 240 ARG B 241 ASP B 265 HIS B 288 SITE 6 AC6 37 GLY B 290 SER B 291 MLI B 402 HOH B 529 SITE 7 AC6 37 HOH B 550 HOH B 551 HOH B 561 HOH B 566 SITE 8 AC6 37 HOH B 574 HOH B 593 HOH B 596 HOH B 614 SITE 9 AC6 37 HOH B 615 HOH B 631 HOH B 638 HOH B 641 SITE 10 AC6 37 HOH B 663 SITE 1 AC7 11 TRP A 138 LEU B 53 ALA B 75 VAL B 76 SITE 2 AC7 11 GLY B 77 LEU B 100 ARG B 241 HIS B 288 SITE 3 AC7 11 NAP B 401 HOH B 503 HOH B 615 SITE 1 AC8 6 TYR B 78 ASN B 95 ARG B 160 HOH B 540 SITE 2 AC8 6 HOH B 561 HOH B 569 SITE 1 AC9 6 LYS B 184 PRO B 185 GLU B 186 ALA B 187 SITE 2 AC9 6 HOH B 553 HOH B 685 CRYST1 141.063 141.063 260.792 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007089 0.004093 0.000000 0.00000 SCALE2 0.000000 0.008186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003834 0.00000