HEADER PROTEIN BINDING 06-NOV-17 6BJE TITLE CRYSTAL STRUCTURE OF LYSOPHOSPHOLIPASE A2 CONJUGATED WITH TITLE 2 PHENYLMETHYLSULFONYL FLUORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-PROTEIN THIOESTERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APT-2,LYSOPHOSPHOLIPASE II,LYSOPLA II; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LYPLA2, APT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) KEYWDS LYSOPHOSPHOLIPASES, PMSF, INHIBITOR, COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.XU REVDAT 4 01-JAN-20 6BJE 1 REMARK REVDAT 3 13-MAR-19 6BJE 1 JRNL REVDAT 2 20-FEB-19 6BJE 1 REMARK REVDAT 1 14-NOV-18 6BJE 0 JRNL AUTH J.A.WEPY,J.J.GALLIGAN,P.J.KINGSLEY,S.XU,M.C.GOODMAN, JRNL AUTH 2 K.A.TALLMAN,C.A.ROUZER,L.J.MARNETT JRNL TITL LYSOPHOSPHOLIPASES COOPERATE TO MEDIATE LIPID HOMEOSTASIS JRNL TITL 2 AND LYSOPHOSPHOLIPID SIGNALING. JRNL REF J. LIPID RES. V. 60 360 2019 JRNL REFN ISSN 1539-7262 JRNL PMID 30482805 JRNL DOI 10.1194/JLR.M087890 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.9282 - 5.6155 1.00 1405 156 0.2134 0.2107 REMARK 3 2 5.6155 - 4.4574 1.00 1301 145 0.1904 0.2353 REMARK 3 3 4.4574 - 3.8940 1.00 1251 138 0.1836 0.2468 REMARK 3 4 3.8940 - 3.5380 1.00 1251 139 0.2030 0.2398 REMARK 3 5 3.5380 - 3.2844 1.00 1249 139 0.2213 0.2780 REMARK 3 6 3.2844 - 3.0908 1.00 1224 134 0.2431 0.3037 REMARK 3 7 3.0908 - 2.9360 1.00 1230 137 0.2490 0.3027 REMARK 3 8 2.9360 - 2.8082 1.00 1225 136 0.3007 0.3628 REMARK 3 9 2.8082 - 2.7001 1.00 1212 135 0.3728 0.4657 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3450 REMARK 3 ANGLE : 0.695 4696 REMARK 3 CHIRALITY : 0.046 538 REMARK 3 PLANARITY : 0.008 604 REMARK 3 DIHEDRAL : 13.795 2084 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.5756 45.5087 2.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.3767 REMARK 3 T33: 0.4624 T12: 0.0585 REMARK 3 T13: 0.0436 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: -0.0316 L22: 2.2436 REMARK 3 L33: 1.6875 L12: 0.2755 REMARK 3 L13: -0.1568 L23: 0.2090 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.5766 S13: 0.0168 REMARK 3 S21: -0.2590 S22: -0.1639 S23: 0.2969 REMARK 3 S31: 0.1041 S32: 0.1318 S33: 0.0383 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8862 43.0553 13.0067 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.1923 REMARK 3 T33: 0.2341 T12: 0.0219 REMARK 3 T13: 0.0126 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.5429 L22: 0.9732 REMARK 3 L33: 1.4443 L12: -1.0050 REMARK 3 L13: 1.1111 L23: -0.1721 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.0039 S13: 0.0191 REMARK 3 S21: -0.0428 S22: -0.0174 S23: 0.0204 REMARK 3 S31: -0.1492 S32: 0.0016 S33: 0.0638 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2030 45.7754 24.5543 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.2021 REMARK 3 T33: 0.1975 T12: -0.0051 REMARK 3 T13: 0.0529 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 3.2365 L22: 2.1655 REMARK 3 L33: 2.8964 L12: -0.5822 REMARK 3 L13: 0.7172 L23: -0.8770 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.3361 S13: 0.3461 REMARK 3 S21: 0.1555 S22: -0.0158 S23: -0.0301 REMARK 3 S31: -0.2070 S32: -0.0597 S33: 0.0357 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7782 42.8643 32.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.5393 T22: 0.6604 REMARK 3 T33: 0.3514 T12: 0.0427 REMARK 3 T13: -0.0002 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2710 L22: 0.3555 REMARK 3 L33: 1.4090 L12: 0.2047 REMARK 3 L13: -0.8103 L23: 0.4029 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.1730 S13: 0.5249 REMARK 3 S21: -0.0515 S22: -0.1048 S23: -0.0550 REMARK 3 S31: -0.0783 S32: 0.2016 S33: -0.0632 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.3779 37.7681 23.0888 REMARK 3 T TENSOR REMARK 3 T11: 0.3899 T22: 0.2762 REMARK 3 T33: 0.3021 T12: 0.0533 REMARK 3 T13: 0.0478 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.0745 L22: 1.3762 REMARK 3 L33: 0.9377 L12: 0.3800 REMARK 3 L13: -0.3863 L23: -0.3402 REMARK 3 S TENSOR REMARK 3 S11: -0.2894 S12: -0.1141 S13: -0.2251 REMARK 3 S21: 0.5104 S22: 0.2115 S23: 0.4625 REMARK 3 S31: 0.1783 S32: -0.0801 S33: 0.0254 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1637 19.7774 6.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.3693 T22: 0.2848 REMARK 3 T33: 0.2618 T12: -0.0030 REMARK 3 T13: -0.0560 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.6197 L22: 1.2231 REMARK 3 L33: 1.5751 L12: 1.3324 REMARK 3 L13: -0.3001 L23: 0.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 0.1799 S13: -0.1506 REMARK 3 S21: 0.0513 S22: 0.0490 S23: -0.3124 REMARK 3 S31: 0.1289 S32: 0.2064 S33: -0.0727 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3711 21.5107 11.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.3545 T22: 0.3380 REMARK 3 T33: 0.3136 T12: 0.0727 REMARK 3 T13: -0.0294 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 0.9361 L22: 1.3190 REMARK 3 L33: 1.1874 L12: 0.4158 REMARK 3 L13: -0.1974 L23: -0.4439 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: -0.2436 S13: -0.4117 REMARK 3 S21: 0.0764 S22: 0.1536 S23: 0.1455 REMARK 3 S31: 0.0829 S32: -0.1648 S33: -0.0871 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9717 17.4808 25.3922 REMARK 3 T TENSOR REMARK 3 T11: 0.7570 T22: 0.5774 REMARK 3 T33: 0.5100 T12: -0.1087 REMARK 3 T13: -0.2517 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.0310 L22: 0.2613 REMARK 3 L33: 0.3720 L12: 0.1065 REMARK 3 L13: -0.0558 L23: 0.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.8787 S12: 0.5349 S13: -0.4493 REMARK 3 S21: 0.9529 S22: 0.6914 S23: -0.7110 REMARK 3 S31: 1.7949 S32: 0.4361 S33: -0.2956 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3207 12.2205 19.4736 REMARK 3 T TENSOR REMARK 3 T11: 0.5479 T22: 0.3400 REMARK 3 T33: 0.2993 T12: 0.0594 REMARK 3 T13: -0.0491 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.2672 L22: 2.4214 REMARK 3 L33: 0.6139 L12: -0.0536 REMARK 3 L13: -0.9425 L23: 0.7663 REMARK 3 S TENSOR REMARK 3 S11: 0.2460 S12: -0.1115 S13: -0.4188 REMARK 3 S21: 0.1827 S22: -0.2990 S23: -0.0186 REMARK 3 S31: 0.5595 S32: 0.0228 S33: -0.0094 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5869 20.7644 29.3869 REMARK 3 T TENSOR REMARK 3 T11: 0.5507 T22: 0.3737 REMARK 3 T33: 0.4543 T12: -0.0557 REMARK 3 T13: -0.1352 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 2.3010 L22: 0.8412 REMARK 3 L33: 1.7840 L12: 1.3265 REMARK 3 L13: 0.4613 L23: -0.0807 REMARK 3 S TENSOR REMARK 3 S11: 0.5540 S12: -0.5181 S13: -0.2792 REMARK 3 S21: 1.0881 S22: -0.4808 S23: -0.0619 REMARK 3 S31: 0.2447 S32: 0.0568 S33: -0.1676 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0006 20.0133 17.6835 REMARK 3 T TENSOR REMARK 3 T11: 0.4376 T22: 0.5179 REMARK 3 T33: 0.3953 T12: 0.0707 REMARK 3 T13: -0.0675 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 2.7050 L22: 0.8217 REMARK 3 L33: 2.1128 L12: -0.4495 REMARK 3 L13: -0.2867 L23: -0.9217 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: 0.0150 S13: -0.2089 REMARK 3 S21: 0.0299 S22: -0.0748 S23: -0.4681 REMARK 3 S31: -0.1594 S32: 0.7392 S33: -0.0617 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 139.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.12500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACITRIC PH 5.6, 15% PEG-3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 139.80950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.38450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.38450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 209.71425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.38450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.38450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.90475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.38450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.38450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 209.71425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.38450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.38450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.90475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.80950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -54.76900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 54.76900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 158 REMARK 465 ALA A 159 REMARK 465 PHE B 155 REMARK 465 PRO B 156 REMARK 465 GLN B 157 REMARK 465 ALA B 158 REMARK 465 ALA B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 122 O2S PMS B 301 1.60 REMARK 500 OE2 GLU B 97 O HOH B 401 1.98 REMARK 500 OG1 THR B 65 OD2 ASP B 77 2.02 REMARK 500 OG SER A 122 O2S PMS A 301 2.02 REMARK 500 O THR B 65 O HOH B 402 2.06 REMARK 500 OH TYR B 130 O HOH B 403 2.16 REMARK 500 O GLU A 89 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -159.89 -111.18 REMARK 500 ILE A 47 98.98 -69.76 REMARK 500 MET A 68 16.96 53.15 REMARK 500 SER A 122 -119.86 55.04 REMARK 500 PRO A 138 81.40 -65.36 REMARK 500 ALA A 154 34.64 -75.92 REMARK 500 ASP A 165 33.45 -90.21 REMARK 500 MET A 178 -80.32 -95.89 REMARK 500 VAL A 194 -71.96 -70.96 REMARK 500 MET A 209 -141.15 -113.20 REMARK 500 PRO A 230 80.99 -63.87 REMARK 500 LEU B 11 84.38 -151.57 REMARK 500 GLU B 21 -167.75 -102.19 REMARK 500 ASP B 35 -156.90 -109.99 REMARK 500 MET B 68 48.05 -74.53 REMARK 500 SER B 122 -126.22 58.02 REMARK 500 PRO B 138 85.66 -65.83 REMARK 500 ALA B 140 -75.74 -66.47 REMARK 500 SER B 162 11.74 58.64 REMARK 500 ALA B 163 56.97 -152.90 REMARK 500 LYS B 164 60.81 -101.47 REMARK 500 ASP B 165 70.12 -111.84 REMARK 500 ASP B 176 104.61 -56.72 REMARK 500 MET B 178 -83.39 -101.24 REMARK 500 VAL B 195 -167.77 -117.44 REMARK 500 MET B 209 -137.12 -110.74 REMARK 500 PRO B 230 83.21 -64.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PMS B 301 and SER B REMARK 800 122 DBREF 6BJE A 10 231 UNP O95372 LYPA2_HUMAN 10 231 DBREF 6BJE B 10 231 UNP O95372 LYPA2_HUMAN 10 231 SEQRES 1 A 222 LEU LEU THR ASP ALA ALA THR VAL SER GLY ALA GLU ARG SEQRES 2 A 222 GLU THR ALA ALA VAL ILE PHE LEU HIS GLY LEU GLY ASP SEQRES 3 A 222 THR GLY HIS SER TRP ALA ASP ALA LEU SER THR ILE ARG SEQRES 4 A 222 LEU PRO HIS VAL LYS TYR ILE CYS PRO HIS ALA PRO ARG SEQRES 5 A 222 ILE PRO VAL THR LEU ASN MET LYS MET VAL MET PRO SER SEQRES 6 A 222 TRP PHE ASP LEU MET GLY LEU SER PRO ASP ALA PRO GLU SEQRES 7 A 222 ASP GLU ALA GLY ILE LYS LYS ALA ALA GLU ASN ILE LYS SEQRES 8 A 222 ALA LEU ILE GLU HIS GLU MET LYS ASN GLY ILE PRO ALA SEQRES 9 A 222 ASN ARG ILE VAL LEU GLY GLY PHE SER GLN GLY GLY ALA SEQRES 10 A 222 LEU SER LEU TYR THR ALA LEU THR CYS PRO HIS PRO LEU SEQRES 11 A 222 ALA GLY ILE VAL ALA LEU SER CYS TRP LEU PRO LEU HIS SEQRES 12 A 222 ARG ALA PHE PRO GLN ALA ALA ASN GLY SER ALA LYS ASP SEQRES 13 A 222 LEU ALA ILE LEU GLN CYS HIS GLY GLU LEU ASP PRO MET SEQRES 14 A 222 VAL PRO VAL ARG PHE GLY ALA LEU THR ALA GLU LYS LEU SEQRES 15 A 222 ARG SER VAL VAL THR PRO ALA ARG VAL GLN PHE LYS THR SEQRES 16 A 222 TYR PRO GLY VAL MET HIS SER SER CYS PRO GLN GLU MET SEQRES 17 A 222 ALA ALA VAL LYS GLU PHE LEU GLU LYS LEU LEU PRO PRO SEQRES 18 A 222 VAL SEQRES 1 B 222 LEU LEU THR ASP ALA ALA THR VAL SER GLY ALA GLU ARG SEQRES 2 B 222 GLU THR ALA ALA VAL ILE PHE LEU HIS GLY LEU GLY ASP SEQRES 3 B 222 THR GLY HIS SER TRP ALA ASP ALA LEU SER THR ILE ARG SEQRES 4 B 222 LEU PRO HIS VAL LYS TYR ILE CYS PRO HIS ALA PRO ARG SEQRES 5 B 222 ILE PRO VAL THR LEU ASN MET LYS MET VAL MET PRO SER SEQRES 6 B 222 TRP PHE ASP LEU MET GLY LEU SER PRO ASP ALA PRO GLU SEQRES 7 B 222 ASP GLU ALA GLY ILE LYS LYS ALA ALA GLU ASN ILE LYS SEQRES 8 B 222 ALA LEU ILE GLU HIS GLU MET LYS ASN GLY ILE PRO ALA SEQRES 9 B 222 ASN ARG ILE VAL LEU GLY GLY PHE SER GLN GLY GLY ALA SEQRES 10 B 222 LEU SER LEU TYR THR ALA LEU THR CYS PRO HIS PRO LEU SEQRES 11 B 222 ALA GLY ILE VAL ALA LEU SER CYS TRP LEU PRO LEU HIS SEQRES 12 B 222 ARG ALA PHE PRO GLN ALA ALA ASN GLY SER ALA LYS ASP SEQRES 13 B 222 LEU ALA ILE LEU GLN CYS HIS GLY GLU LEU ASP PRO MET SEQRES 14 B 222 VAL PRO VAL ARG PHE GLY ALA LEU THR ALA GLU LYS LEU SEQRES 15 B 222 ARG SER VAL VAL THR PRO ALA ARG VAL GLN PHE LYS THR SEQRES 16 B 222 TYR PRO GLY VAL MET HIS SER SER CYS PRO GLN GLU MET SEQRES 17 B 222 ALA ALA VAL LYS GLU PHE LEU GLU LYS LEU LEU PRO PRO SEQRES 18 B 222 VAL HET PMS A 301 10 HET PMS B 301 10 HETNAM PMS PHENYLMETHANESULFONIC ACID FORMUL 3 PMS 2(C7 H8 O3 S) FORMUL 5 HOH *32(H2 O) HELIX 1 AA1 GLY A 37 SER A 45 1 9 HELIX 2 AA2 ASP A 88 ASN A 109 1 22 HELIX 3 AA3 PRO A 112 ASN A 114 5 3 HELIX 4 AA4 SER A 122 CYS A 135 1 14 HELIX 5 AA5 PRO A 180 VAL A 195 1 16 HELIX 6 AA6 THR A 196 ALA A 198 5 3 HELIX 7 AA7 CYS A 213 LEU A 228 1 16 HELIX 8 AA8 GLY B 37 SER B 45 1 9 HELIX 9 AA9 ASP B 88 ASN B 109 1 22 HELIX 10 AB1 PRO B 112 ASN B 114 5 3 HELIX 11 AB2 SER B 122 LEU B 133 1 12 HELIX 12 AB3 PRO B 180 VAL B 195 1 16 HELIX 13 AB4 THR B 196 ALA B 198 5 3 HELIX 14 AB5 CYS B 213 LEU B 228 1 16 SHEET 1 AA1 6 VAL A 52 ILE A 55 0 SHEET 2 AA1 6 ALA A 25 LEU A 30 1 N VAL A 27 O ILE A 55 SHEET 3 AA1 6 ILE A 116 PHE A 121 1 O GLY A 119 N ILE A 28 SHEET 4 AA1 6 GLY A 141 LEU A 145 1 O GLY A 141 N LEU A 118 SHEET 5 AA1 6 ALA A 167 GLY A 173 1 O ALA A 167 N ILE A 142 SHEET 6 AA1 6 VAL A 200 TYR A 205 1 O GLN A 201 N GLN A 170 SHEET 1 AA2 2 ARG A 61 PRO A 63 0 SHEET 2 AA2 2 VAL A 71 PRO A 73 -1 O MET A 72 N ILE A 62 SHEET 1 AA3 7 ALA B 14 VAL B 17 0 SHEET 2 AA3 7 VAL B 52 PRO B 57 -1 O TYR B 54 N VAL B 17 SHEET 3 AA3 7 ALA B 25 LEU B 30 1 N VAL B 27 O ILE B 55 SHEET 4 AA3 7 ILE B 116 PHE B 121 1 O GLY B 119 N ILE B 28 SHEET 5 AA3 7 GLY B 141 LEU B 145 1 O VAL B 143 N GLY B 120 SHEET 6 AA3 7 ALA B 167 GLY B 173 1 O ALA B 167 N ILE B 142 SHEET 7 AA3 7 VAL B 200 TYR B 205 1 O GLN B 201 N ILE B 168 SHEET 1 AA4 2 ARG B 61 PRO B 63 0 SHEET 2 AA4 2 VAL B 71 PRO B 73 -1 O MET B 72 N ILE B 62 LINK OG SER A 122 S PMS A 301 1555 1555 1.56 LINK OG SER B 122 S PMS B 301 1555 1555 1.58 SITE 1 AC1 8 LEU A 33 LEU A 78 SER A 122 GLN A 123 SITE 2 AC1 8 TRP A 148 MET A 178 HIS A 210 ASN B 67 SITE 1 AC2 15 LEU B 33 LEU B 66 LEU B 78 PHE B 121 SITE 2 AC2 15 GLN B 123 GLY B 124 GLY B 125 ALA B 126 SITE 3 AC2 15 LEU B 145 SER B 146 CYS B 147 TRP B 148 SITE 4 AC2 15 MET B 178 VAL B 179 HIS B 210 CRYST1 54.769 54.769 279.619 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003576 0.00000