HEADER VIRAL PROTEIN 09-NOV-17 6BKR TITLE CRYSTAL STRUCTURE OF THE A/WYOMING/3/2003 (H3N2) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH 6'-SLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: A/WYOMING/3E/2003(H3); SOURCE 4 ORGANISM_TAXID: 430416; SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_COMMON: A/NYMC X-149C6(PUERTO RICO/8/1934-WYOMING/03/2003) SOURCE 11 (H3N2); SOURCE 12 ORGANISM_TAXID: 518976; SOURCE 13 GENE: HA; SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS INFLUENZA, HEMAGGLUTININ, RECEPTOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.C.WU,I.A.WILSON REVDAT 7 16-OCT-24 6BKR 1 REMARK REVDAT 6 04-OCT-23 6BKR 1 HETSYN LINK REVDAT 5 29-JUL-20 6BKR 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-DEC-19 6BKR 1 REMARK REVDAT 3 11-APR-18 6BKR 1 JRNL REVDAT 2 14-MAR-18 6BKR 1 COMPND REMARK ATOM REVDAT 1 28-FEB-18 6BKR 0 JRNL AUTH N.C.WU,A.J.THOMPSON,J.XIE,C.W.LIN,C.M.NYCHOLAT,X.ZHU, JRNL AUTH 2 R.A.LERNER,J.C.PAULSON,I.A.WILSON JRNL TITL A COMPLEX EPISTATIC NETWORK LIMITS THE MUTATIONAL JRNL TITL 2 REVERSIBILITY IN THE INFLUENZA HEMAGGLUTININ JRNL TITL 3 RECEPTOR-BINDING SITE. JRNL REF NAT COMMUN V. 9 1264 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29593268 JRNL DOI 10.1038/S41467-018-03663-5 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3869 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 255 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.62000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.244 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4300 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3960 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5866 ; 1.530 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9180 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;34.719 ;24.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 701 ;13.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;18.867 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 685 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4756 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 970 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1984 ; 0.845 ; 1.633 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1983 ; 0.845 ; 1.633 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 1.403 ; 2.445 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2484 ; 1.402 ; 2.445 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2316 ; 1.513 ; 2.200 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2316 ; 1.512 ; 2.200 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3371 ; 2.494 ; 3.246 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18348 ; 6.743 ;18.287 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 17765 ; 6.002 ;17.541 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0315 -35.1388 -60.6453 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0971 REMARK 3 T33: 0.1017 T12: -0.0148 REMARK 3 T13: -0.0553 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.3266 L22: 0.2519 REMARK 3 L33: 1.4902 L12: -0.0357 REMARK 3 L13: 0.2211 L23: -0.1060 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.0894 S13: -0.0245 REMARK 3 S21: -0.1058 S22: 0.0322 S23: 0.1118 REMARK 3 S31: 0.0809 S32: -0.1944 S33: -0.0994 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6599 -27.1599 -94.5465 REMARK 3 T TENSOR REMARK 3 T11: 0.2232 T22: 0.3381 REMARK 3 T33: 0.0764 T12: 0.0387 REMARK 3 T13: -0.1129 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 2.3110 L22: 1.5018 REMARK 3 L33: 2.1274 L12: 0.4039 REMARK 3 L13: -0.3382 L23: -0.2958 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.4020 S13: 0.1301 REMARK 3 S21: -0.3669 S22: -0.0322 S23: 0.2176 REMARK 3 S31: -0.0274 S32: -0.3352 S33: -0.0218 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2764 -30.2570 -96.8813 REMARK 3 T TENSOR REMARK 3 T11: 0.2696 T22: 0.3094 REMARK 3 T33: 0.0485 T12: 0.0200 REMARK 3 T13: -0.0686 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.1311 L22: 3.0268 REMARK 3 L33: 4.3853 L12: -0.9801 REMARK 3 L13: -1.1760 L23: 2.3952 REMARK 3 S TENSOR REMARK 3 S11: 0.1787 S12: 0.4538 S13: 0.0291 REMARK 3 S21: -0.4751 S22: 0.0324 S23: -0.0619 REMARK 3 S31: -0.0263 S32: 0.0816 S33: -0.2110 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 41.8373 -19.2482 -90.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.2329 REMARK 3 T33: 0.0709 T12: -0.0188 REMARK 3 T13: 0.0088 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 6.7369 L22: 21.4571 REMARK 3 L33: 3.5719 L12: 2.0486 REMARK 3 L13: 2.4975 L23: 1.3981 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 0.1822 S13: 0.1250 REMARK 3 S21: -0.3065 S22: 0.0522 S23: -0.2363 REMARK 3 S31: -0.2105 S32: 0.1593 S33: -0.1225 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6752 -28.8646 -90.4104 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.2518 REMARK 3 T33: 0.0465 T12: 0.0037 REMARK 3 T13: -0.0710 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 2.2295 L22: 1.3918 REMARK 3 L33: 2.0035 L12: -1.0153 REMARK 3 L13: -0.4427 L23: 0.6524 REMARK 3 S TENSOR REMARK 3 S11: 0.1283 S12: 0.3669 S13: 0.0290 REMARK 3 S21: -0.3329 S22: 0.0118 S23: 0.1026 REMARK 3 S31: -0.0386 S32: -0.0339 S33: -0.1401 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5356 -36.5311 -50.2582 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0904 REMARK 3 T33: 0.1128 T12: -0.0180 REMARK 3 T13: -0.0377 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.2432 L22: 0.2505 REMARK 3 L33: 1.4753 L12: -0.0191 REMARK 3 L13: 0.3887 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0085 S13: -0.0212 REMARK 3 S21: -0.0409 S22: 0.0308 S23: 0.1053 REMARK 3 S31: 0.0734 S32: -0.1738 S33: -0.0770 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9917 -40.8477 -13.6556 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.0875 REMARK 3 T33: 0.1033 T12: -0.0018 REMARK 3 T13: -0.0001 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 12.2031 L22: 2.9372 REMARK 3 L33: 2.3489 L12: 4.1472 REMARK 3 L13: -1.7678 L23: -0.1996 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.1651 S13: -0.1617 REMARK 3 S21: 0.0922 S22: 0.0302 S23: -0.0543 REMARK 3 S31: 0.2208 S32: 0.0203 S33: -0.0362 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1555 -33.8683 -14.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.1252 REMARK 3 T33: 0.1211 T12: -0.0108 REMARK 3 T13: 0.0202 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.6490 L22: 1.5810 REMARK 3 L33: 6.6001 L12: 0.7605 REMARK 3 L13: -1.8240 L23: -2.2799 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0017 S13: 0.0314 REMARK 3 S21: 0.0430 S22: 0.0059 S23: 0.1306 REMARK 3 S31: -0.1459 S32: -0.3078 S33: -0.0342 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 54 B 71 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5576 -31.0902 -55.1882 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1053 REMARK 3 T33: 0.1132 T12: 0.0029 REMARK 3 T13: -0.0228 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.0659 L22: 0.5656 REMARK 3 L33: 1.8688 L12: -0.1780 REMARK 3 L13: -0.9419 L23: -0.2184 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.0394 S13: -0.0439 REMARK 3 S21: 0.0679 S22: 0.0353 S23: 0.1099 REMARK 3 S31: -0.0081 S32: -0.1920 S33: -0.0465 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 72 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5150 -33.8001 -38.2486 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.0753 REMARK 3 T33: 0.1207 T12: -0.0131 REMARK 3 T13: -0.0077 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.3972 L22: 0.2750 REMARK 3 L33: 6.5436 L12: -0.1088 REMARK 3 L13: -1.2425 L23: 0.3655 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.0003 S13: -0.0198 REMARK 3 S21: -0.0110 S22: 0.0047 S23: 0.0244 REMARK 3 S31: -0.0109 S32: 0.0412 S33: -0.0373 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 168 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6209 -30.9348 4.9375 REMARK 3 T TENSOR REMARK 3 T11: 0.0669 T22: 0.0920 REMARK 3 T33: 0.0684 T12: -0.0240 REMARK 3 T13: 0.0460 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.3089 L22: 1.9477 REMARK 3 L33: 2.1877 L12: 0.3504 REMARK 3 L13: 0.6501 L23: 0.4250 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.1916 S13: 0.1160 REMARK 3 S21: 0.1826 S22: 0.0108 S23: 0.1080 REMARK 3 S31: 0.0188 S32: -0.0297 S33: -0.0097 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 169 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 45.9801 -34.9994 14.6431 REMARK 3 T TENSOR REMARK 3 T11: 0.6328 T22: 0.7304 REMARK 3 T33: 0.5918 T12: 0.0000 REMARK 3 T13: -0.1982 T23: 0.3808 REMARK 3 L TENSOR REMARK 3 L11: 28.1735 L22: 3.4918 REMARK 3 L33: 5.4345 L12: -5.9159 REMARK 3 L13: 5.9775 L23: 1.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.3898 S12: -2.4994 S13: -0.6470 REMARK 3 S21: 0.4780 S22: 0.6434 S23: -0.5681 REMARK 3 S31: 0.7717 S32: 0.3777 S33: -0.2535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 712 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 18.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 52.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4O5N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 9 AND 42% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.22900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.99973 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 128.56400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.22900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.99973 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 128.56400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.22900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.99973 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 128.56400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.22900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.99973 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 128.56400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.22900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.99973 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 128.56400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.22900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.99973 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.56400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.99945 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 257.12800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.99945 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 257.12800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.99945 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 257.12800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.99945 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 257.12800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.99945 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 257.12800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.99945 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 257.12800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 48240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.22900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -86.99918 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 100.45800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 538 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 301 O HOH B 327 1.09 REMARK 500 O HOH B 358 O HOH B 444 1.39 REMARK 500 O HOH B 405 O HOH B 489 1.76 REMARK 500 ND2 ASN A 246 O HOH A 501 1.87 REMARK 500 O HOH B 302 O HOH B 332 1.92 REMARK 500 O HOH B 351 O HOH B 380 2.04 REMARK 500 OD1 ASN B 104 O HOH B 301 2.13 REMARK 500 NE2 HIS B 26 O HOH B 302 2.18 REMARK 500 O6 GAL G 2 O6 SIA G 3 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 351 O HOH B 351 2545 1.95 REMARK 500 O HOH A 534 O HOH B 464 3655 2.06 REMARK 500 O HOH B 304 O HOH B 304 6555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 75.43 -106.82 REMARK 500 GLU A 62 -120.16 51.44 REMARK 500 SER A 143 -3.96 69.13 REMARK 500 ALA B 5 -66.79 -91.85 REMARK 500 PHE B 63 -110.26 -120.35 REMARK 500 GLN B 65 -134.07 -131.15 REMARK 500 ARG B 127 -122.24 52.11 REMARK 500 TYR B 141 31.79 -90.74 REMARK 500 ASP B 145 -177.75 -69.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE GLYCAN COMPONENT REMARK 630 MOLECULE NAME: 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 NAG A 401 REMARK 630 NAG A 412 REMARK 630 NAG B 201 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE DBREF 6BKR A 11 329 UNP A4GYF9 A4GYF9_9INFA 11 329 DBREF 6BKR B 1 174 UNP B4UPH9 B4UPH9_9INFA 346 519 SEQADV 6BKR ALA A 7 UNP A4GYF9 EXPRESSION TAG SEQADV 6BKR ASP A 8 UNP A4GYF9 EXPRESSION TAG SEQADV 6BKR PRO A 9 UNP A4GYF9 EXPRESSION TAG SEQADV 6BKR GLY A 10 UNP A4GYF9 EXPRESSION TAG SEQADV 6BKR PHE A 219 UNP A4GYF9 SER 219 ENGINEERED MUTATION SEQRES 1 A 323 ALA ASP PRO GLY ALA THR LEU CYS LEU GLY HIS HIS ALA SEQRES 2 A 323 VAL PRO ASN GLY THR ILE VAL LYS THR ILE THR ASN ASP SEQRES 3 A 323 GLN ILE GLU VAL THR ASN ALA THR GLU LEU VAL GLN SER SEQRES 4 A 323 SER SER THR GLY GLY ILE CYS ASP SER PRO HIS GLN ILE SEQRES 5 A 323 LEU ASP GLY GLU ASN CYS THR LEU ILE ASP ALA LEU LEU SEQRES 6 A 323 GLY ASP PRO GLN CYS ASP GLY PHE GLN ASN LYS LYS TRP SEQRES 7 A 323 ASP LEU PHE VAL GLU ARG SER LYS ALA TYR SER ASN CYS SEQRES 8 A 323 TYR PRO TYR ASP VAL PRO ASP TYR ALA SER LEU ARG SER SEQRES 9 A 323 LEU VAL ALA SER SER GLY THR LEU GLU PHE ASN ASN GLU SEQRES 10 A 323 SER PHE ASN TRP ALA GLY VAL THR GLN ASN GLY THR SER SEQRES 11 A 323 SER ALA CYS LYS ARG ARG SER ASN LYS SER PHE PHE SER SEQRES 12 A 323 ARG LEU ASN TRP LEU THR HIS LEU LYS TYR LYS TYR PRO SEQRES 13 A 323 ALA LEU ASN VAL THR MET PRO ASN ASN GLU LYS PHE ASP SEQRES 14 A 323 LYS LEU TYR ILE TRP GLY VAL HIS HIS PRO VAL THR ASP SEQRES 15 A 323 SER ASP GLN ILE SER LEU TYR ALA GLN ALA SER GLY ARG SEQRES 16 A 323 ILE THR VAL SER THR LYS ARG SER GLN GLN THR VAL ILE SEQRES 17 A 323 PRO ASN ILE GLY PHE ARG PRO ARG VAL ARG ASP ILE SER SEQRES 18 A 323 SER ARG ILE SER ILE TYR TRP THR ILE VAL LYS PRO GLY SEQRES 19 A 323 ASP ILE LEU LEU ILE ASN SER THR GLY ASN LEU ILE ALA SEQRES 20 A 323 PRO ARG GLY TYR PHE LYS ILE ARG SER GLY LYS SER SER SEQRES 21 A 323 ILE MET ARG SER ASP ALA PRO ILE GLY LYS CYS ASN SER SEQRES 22 A 323 GLU CYS ILE THR PRO ASN GLY SER ILE PRO ASN ASP LYS SEQRES 23 A 323 PRO PHE GLN ASN VAL ASN ARG ILE THR TYR GLY ALA CYS SEQRES 24 A 323 PRO ARG TYR VAL LYS GLN ASN THR LEU LYS LEU ALA THR SEQRES 25 A 323 GLY MET ARG ASN VAL PRO GLU LYS GLN THR ARG SEQRES 1 B 174 GLY ILE PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 174 TRP GLU GLY MET VAL ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 174 GLN ASN SER GLU GLY THR GLY GLN ALA ALA ASP LEU LYS SEQRES 4 B 174 SER THR GLN ALA ALA ILE ASN GLN ILE ASN GLY LYS LEU SEQRES 5 B 174 ASN ARG LEU ILE GLY LYS THR ASN GLU LYS PHE HIS GLN SEQRES 6 B 174 ILE GLU LYS GLU PHE SER GLU VAL GLU GLY ARG ILE GLN SEQRES 7 B 174 ASP LEU GLU LYS TYR VAL GLU ASP THR LYS ILE ASP LEU SEQRES 8 B 174 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA LEU GLU ASN SEQRES 9 B 174 GLN HIS THR ILE ASP LEU THR ASP SER GLU MET ASN LYS SEQRES 10 B 174 LEU PHE GLU ARG THR LYS LYS GLN LEU ARG GLU ASN ALA SEQRES 11 B 174 GLU ASP MET GLY ASN GLY CYS PHE LYS ILE TYR HIS LYS SEQRES 12 B 174 CYS ASP ASN ALA CYS ILE GLU SER ILE ARG ASN GLY THR SEQRES 13 B 174 TYR ASP HIS ASP VAL TYR ARG ASP GLU ALA LEU ASN ASN SEQRES 14 B 174 ARG PHE GLN ILE LYS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG G 1 15 HET GAL G 2 11 HET SIA G 3 20 HET NAG A 401 14 HET NAG A 412 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 7 GAL C6 H12 O6 FORMUL 7 SIA C11 H19 N O9 FORMUL 11 HOH *541(H2 O) HELIX 1 AA1 THR A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 73 GLN A 80 5 8 HELIX 3 AA3 ASP A 104 GLY A 116 1 13 HELIX 4 AA4 THR A 187 ALA A 196 1 10 HELIX 5 AA5 ASP B 37 ILE B 56 1 20 HELIX 6 AA6 GLY B 75 ARG B 127 1 53 HELIX 7 AA7 ASP B 145 ASN B 154 1 10 HELIX 8 AA8 ASP B 158 PHE B 171 1 14 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N PHE B 24 O ALA B 35 SHEET 3 AA1 5 ALA A 11 HIS A 17 -1 N CYS A 14 O ARG B 25 SHEET 4 AA1 5 CYS B 137 ILE B 140 -1 O ILE B 140 N ALA A 11 SHEET 5 AA1 5 ALA B 130 ASP B 132 -1 N GLU B 131 O LYS B 139 SHEET 1 AA2 2 THR A 24 VAL A 26 0 SHEET 2 AA2 2 ILE A 34 VAL A 36 -1 O ILE A 34 N VAL A 26 SHEET 1 AA3 2 ALA A 39 GLU A 41 0 SHEET 2 AA3 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 AA4 3 VAL A 43 GLN A 44 0 SHEET 2 AA4 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 AA4 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 AA5 2 ILE A 51 SER A 54 0 SHEET 2 AA5 2 ILE A 274 ASN A 278 1 O GLY A 275 N ILE A 51 SHEET 1 AA6 3 ILE A 58 ASP A 60 0 SHEET 2 AA6 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 SER A 266 ARG A 269 1 O MET A 268 N PHE A 87 SHEET 1 AA7 5 TYR A 100 ASP A 101 0 SHEET 2 AA7 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA7 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA7 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 AA7 5 PHE A 120 ASN A 122 -1 N ASN A 121 O TYR A 257 SHEET 1 AA8 5 TYR A 100 ASP A 101 0 SHEET 2 AA8 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 AA8 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 AA8 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 AA8 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 AA9 2 SER A 136 ARG A 141 0 SHEET 2 AA9 2 ASN A 144 SER A 146 -1 O ASN A 144 N ARG A 141 SHEET 1 AB1 4 LEU A 164 PRO A 169 0 SHEET 2 AB1 4 ILE A 242 SER A 247 -1 O SER A 247 N LEU A 164 SHEET 3 AB1 4 ILE A 202 SER A 205 -1 N SER A 205 O LEU A 244 SHEET 4 AB1 4 GLN A 210 VAL A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 AB2 4 GLY A 286 ILE A 288 0 SHEET 2 AB2 4 CYS A 281 THR A 283 -1 N CYS A 281 O ILE A 288 SHEET 3 AB2 4 TYR A 302 CYS A 305 -1 O TYR A 302 N ILE A 282 SHEET 4 AB2 4 ASN B 60 LYS B 62 -1 O LYS B 62 N GLY A 303 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.12 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.10 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.10 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.07 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.05 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.17 LINK ND2 ASN A 38 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 63 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 133 C1 NAG A 412 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 246 C1 NAG F 1 1555 1555 1.47 LINK ND2 ASN A 285 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 154 C1 NAG B 201 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O4 NAG G 1 C1 GAL G 2 1555 1555 1.44 LINK O6 GAL G 2 C2 SIA G 3 1555 1555 1.33 CISPEP 1 SER A 54 PRO A 55 0 4.05 CRYST1 100.458 100.458 385.692 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009954 0.005747 0.000000 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002593 0.00000