HEADER ELECTRON TRANSPORT 09-NOV-17 6BKV TITLE CRYSTAL STRUCTURE OF THIOREDOXIN FROM HELICOBACTER PYLORI (STRAIN G27) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEPYC.00029.A.B1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: BV499_05595, BZK25_01255, BZK28_00485, HPY207_04265; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HEPYC.00029.A.B1 KEYWDS SSGCID, HELICOBACTER PYLORI, THIOREDOXIN, TRXA, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, ELECTRON KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 03-APR-24 6BKV 1 REMARK REVDAT 1 06-DEC-17 6BKV 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN FROM HELICOBACTER PYLORI JRNL TITL 2 (STRAIN G27) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3454 - 5.3765 0.98 1328 131 0.1578 0.1597 REMARK 3 2 5.3765 - 4.2690 1.00 1283 123 0.1248 0.1460 REMARK 3 3 4.2690 - 3.7298 1.00 1232 164 0.1384 0.1691 REMARK 3 4 3.7298 - 3.3890 0.99 1233 148 0.1804 0.1918 REMARK 3 5 3.3890 - 3.1462 1.00 1237 153 0.2122 0.2875 REMARK 3 6 3.1462 - 2.9607 1.00 1257 116 0.2256 0.2517 REMARK 3 7 2.9607 - 2.8125 1.00 1217 148 0.2473 0.2924 REMARK 3 8 2.8125 - 2.6901 1.00 1216 152 0.2646 0.3083 REMARK 3 9 2.6901 - 2.5866 0.99 1196 140 0.2533 0.3133 REMARK 3 10 2.5866 - 2.4973 0.99 1239 140 0.2416 0.2883 REMARK 3 11 2.4973 - 2.4192 0.99 1233 132 0.2477 0.2742 REMARK 3 12 2.4192 - 2.3501 0.99 1225 123 0.2697 0.3162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1304 -24.6542 1.9734 REMARK 3 T TENSOR REMARK 3 T11: 0.6755 T22: 0.5754 REMARK 3 T33: 0.8349 T12: -0.2326 REMARK 3 T13: -0.0851 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 7.7522 L22: 8.9558 REMARK 3 L33: 7.7987 L12: -0.2382 REMARK 3 L13: 2.9037 L23: -0.1330 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: 0.2874 S13: 0.4948 REMARK 3 S21: 0.0956 S22: 0.2204 S23: 0.8348 REMARK 3 S31: 0.6427 S32: -0.6025 S33: -0.2116 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4124 -32.2769 1.6395 REMARK 3 T TENSOR REMARK 3 T11: 0.5983 T22: 0.4257 REMARK 3 T33: 0.5106 T12: -0.1637 REMARK 3 T13: 0.0210 T23: -0.0721 REMARK 3 L TENSOR REMARK 3 L11: 7.9679 L22: 5.4371 REMARK 3 L33: 4.8435 L12: 2.8151 REMARK 3 L13: -0.9431 L23: 0.7089 REMARK 3 S TENSOR REMARK 3 S11: 0.2123 S12: 0.1990 S13: 0.0796 REMARK 3 S21: 0.7463 S22: -0.3019 S23: -0.0519 REMARK 3 S31: 0.3222 S32: -0.2370 S33: 0.0989 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2137 -34.5520 10.7999 REMARK 3 T TENSOR REMARK 3 T11: 0.9403 T22: 0.6767 REMARK 3 T33: 0.6292 T12: -0.3343 REMARK 3 T13: 0.1706 T23: -0.0889 REMARK 3 L TENSOR REMARK 3 L11: 5.5134 L22: 6.5117 REMARK 3 L33: 6.3389 L12: 1.7811 REMARK 3 L13: 3.2462 L23: 0.3265 REMARK 3 S TENSOR REMARK 3 S11: 0.6830 S12: -1.1921 S13: -0.0148 REMARK 3 S21: 1.2222 S22: -0.7917 S23: 0.4225 REMARK 3 S31: 0.5459 S32: -0.7126 S33: 0.1303 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1533 3.1223 5.7938 REMARK 3 T TENSOR REMARK 3 T11: 1.2331 T22: 0.6552 REMARK 3 T33: 0.7095 T12: -0.2321 REMARK 3 T13: 0.2766 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 7.3688 L22: 4.3560 REMARK 3 L33: 7.6767 L12: 1.4632 REMARK 3 L13: -2.6882 L23: 4.3185 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: 0.1766 S13: 0.6234 REMARK 3 S21: 2.0143 S22: -0.2237 S23: 0.5725 REMARK 3 S31: 1.5362 S32: -1.5741 S33: 0.1761 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1372 -3.2252 -10.6236 REMARK 3 T TENSOR REMARK 3 T11: 1.3976 T22: 0.6575 REMARK 3 T33: 0.6732 T12: -0.3561 REMARK 3 T13: 0.0343 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 4.0952 L22: 6.0648 REMARK 3 L33: 9.6336 L12: 0.6439 REMARK 3 L13: 2.6036 L23: 7.3113 REMARK 3 S TENSOR REMARK 3 S11: -0.4121 S12: 0.0867 S13: -0.0036 REMARK 3 S21: -1.8404 S22: -0.0889 S23: -0.1647 REMARK 3 S31: -0.1802 S32: -0.9615 S33: -0.2996 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9726 -9.8561 -5.9937 REMARK 3 T TENSOR REMARK 3 T11: 0.8523 T22: 0.4915 REMARK 3 T33: 0.8427 T12: -0.1744 REMARK 3 T13: -0.0966 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 7.2829 L22: 3.7222 REMARK 3 L33: 7.4370 L12: 0.2169 REMARK 3 L13: -2.8590 L23: -0.8534 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: 0.9215 S13: 0.5424 REMARK 3 S21: -1.7108 S22: 0.6367 S23: 0.5802 REMARK 3 S31: -0.1086 S32: -0.6482 S33: -0.5118 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4927 -10.3464 5.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.6464 T22: 0.3698 REMARK 3 T33: 0.7498 T12: -0.0566 REMARK 3 T13: -0.1261 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 8.0640 L22: 4.2587 REMARK 3 L33: 7.6888 L12: -3.8149 REMARK 3 L13: 0.6546 L23: -0.3030 REMARK 3 S TENSOR REMARK 3 S11: -0.2185 S12: -0.0574 S13: 0.7070 REMARK 3 S21: 0.2531 S22: 0.5977 S23: 0.0900 REMARK 3 S31: -0.0945 S32: -0.1599 S33: -0.3353 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3365 -15.8517 -4.1638 REMARK 3 T TENSOR REMARK 3 T11: 0.7908 T22: 0.4221 REMARK 3 T33: 0.5930 T12: -0.1626 REMARK 3 T13: -0.0800 T23: -0.1048 REMARK 3 L TENSOR REMARK 3 L11: 5.0251 L22: 9.5227 REMARK 3 L33: 5.2847 L12: 1.1200 REMARK 3 L13: -1.0866 L23: -0.1820 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 0.6485 S13: -0.4581 REMARK 3 S21: -1.7107 S22: 0.4916 S23: 0.1380 REMARK 3 S31: 0.2470 S32: -0.1024 S33: -0.2565 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID -2 THROUGH 8 OR REMARK 3 (RESID 9 AND (NAME N OR NAME CA OR NAME C REMARK 3 OR NAME O OR NAME CB )) OR RESID 10 REMARK 3 THROUGH 62 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64 THROUGH 105)) REMARK 3 SELECTION : (CHAIN B AND (RESID -2 THROUGH 61 OR REMARK 3 (RESID 62 THROUGH 63 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 64 THROUGH 105)) REMARK 3 ATOM PAIRS NUMBER : 986 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.339 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.563 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.71 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 2YNXA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTIC MCSG1 SCREEN, E12: 2.4 MM REMARK 280 SODIUM MALONATE, 24.59 MG/ML HEPYC.00029.A.B1.PS38229, REMARK 280 CRYOPROTECTANT: DIRECT, TRAY 290729 E12, PUCK BYM2-1, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.01667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.01667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A 106 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 GLY B 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 HIS B -4 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 63 CG CD OE1 OE2 REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 72 OG SER B 2 4545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HEPYC.00029.A RELATED DB: TARGETTRACK DBREF1 6BKV A 1 106 UNP A0A0B2EU35_HELPX DBREF2 6BKV A A0A0B2EU35 1 106 DBREF1 6BKV B 1 106 UNP A0A0B2EU35_HELPX DBREF2 6BKV B A0A0B2EU35 1 106 SEQADV 6BKV MET A -7 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV ALA A -6 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS A -5 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS A -4 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS A -3 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS A -2 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS A -1 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS A 0 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV MET B -7 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV ALA B -6 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS B -5 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS B -4 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS B -3 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS B -2 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS B -1 UNP A0A0B2EU3 EXPRESSION TAG SEQADV 6BKV HIS B 0 UNP A0A0B2EU3 EXPRESSION TAG SEQRES 1 A 114 MET ALA HIS HIS HIS HIS HIS HIS MET SER HIS TYR ILE SEQRES 2 A 114 GLU LEU THR GLU GLU ASN PHE GLU SER THR ILE LYS LYS SEQRES 3 A 114 GLY VAL ALA LEU VAL ASP PHE TRP ALA PRO TRP CYS GLY SEQRES 4 A 114 PRO CYS LYS MET LEU SER PRO VAL ILE ASP GLU LEU ALA SEQRES 5 A 114 SER GLU TYR GLN GLY LYS ALA LYS ILE CYS LYS VAL ASN SEQRES 6 A 114 THR ASP GLU GLN GLU GLU LEU SER ALA LYS PHE GLY ILE SEQRES 7 A 114 ARG SER ILE PRO THR LEU LEU PHE THR LYS ASP GLY GLU SEQRES 8 A 114 VAL VAL HIS GLN LEU VAL GLY VAL GLN THR LYS VAL ALA SEQRES 9 A 114 LEU LYS GLU GLN LEU ASN LYS LEU LEU GLY SEQRES 1 B 114 MET ALA HIS HIS HIS HIS HIS HIS MET SER HIS TYR ILE SEQRES 2 B 114 GLU LEU THR GLU GLU ASN PHE GLU SER THR ILE LYS LYS SEQRES 3 B 114 GLY VAL ALA LEU VAL ASP PHE TRP ALA PRO TRP CYS GLY SEQRES 4 B 114 PRO CYS LYS MET LEU SER PRO VAL ILE ASP GLU LEU ALA SEQRES 5 B 114 SER GLU TYR GLN GLY LYS ALA LYS ILE CYS LYS VAL ASN SEQRES 6 B 114 THR ASP GLU GLN GLU GLU LEU SER ALA LYS PHE GLY ILE SEQRES 7 B 114 ARG SER ILE PRO THR LEU LEU PHE THR LYS ASP GLY GLU SEQRES 8 B 114 VAL VAL HIS GLN LEU VAL GLY VAL GLN THR LYS VAL ALA SEQRES 9 B 114 LEU LYS GLU GLN LEU ASN LYS LEU LEU GLY FORMUL 3 HOH *50(H2 O) HELIX 1 AA1 ASN A 11 LYS A 17 1 7 HELIX 2 AA2 CYS A 30 TYR A 47 1 18 HELIX 3 AA3 GLN A 61 PHE A 68 1 8 HELIX 4 AA4 THR A 93 LEU A 105 1 13 HELIX 5 AA5 ASN B 11 LYS B 17 1 7 HELIX 6 AA6 CYS B 30 TYR B 47 1 18 HELIX 7 AA7 GLN B 61 PHE B 68 1 8 HELIX 8 AA8 THR B 93 LEU B 105 1 13 SHEET 1 AA1 2 HIS A 0 MET A 1 0 SHEET 2 AA1 2 SER B 72 ILE B 73 1 O ILE B 73 N HIS A 0 SHEET 1 AA2 5 ILE A 5 GLU A 6 0 SHEET 2 AA2 5 LYS A 52 ASN A 57 1 O LYS A 55 N ILE A 5 SHEET 3 AA2 5 VAL A 20 TRP A 26 1 N LEU A 22 O CYS A 54 SHEET 4 AA2 5 THR A 75 LYS A 80 -1 O THR A 75 N PHE A 25 SHEET 5 AA2 5 GLU A 83 VAL A 89 -1 O LEU A 88 N LEU A 76 SHEET 1 AA3 5 ILE B 5 GLU B 6 0 SHEET 2 AA3 5 LYS B 52 ASN B 57 1 O ILE B 53 N ILE B 5 SHEET 3 AA3 5 VAL B 20 TRP B 26 1 N LEU B 22 O CYS B 54 SHEET 4 AA3 5 THR B 75 LYS B 80 -1 O THR B 75 N PHE B 25 SHEET 5 AA3 5 GLU B 83 VAL B 89 -1 O VAL B 85 N PHE B 78 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.07 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.08 CISPEP 1 ILE A 73 PRO A 74 0 0.54 CISPEP 2 ILE B 73 PRO B 74 0 0.16 CRYST1 93.160 93.160 78.050 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010734 0.006197 0.000000 0.00000 SCALE2 0.000000 0.012395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012812 0.00000