HEADER TRANSFERASE 09-NOV-17 6BL8
TITLE PREDICTING THE CONFORMATIONAL VARIABILITY OF ABL TYROSINE KINASE USING
TITLE 2 MOLECULAR DYNAMICS SIMULATIONS AND MARKOV STATE MODELS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 233-504;
COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1, ABELSON
COMPND 6 TYROSINE-PROTEIN KINASE 1, PROTO-ONCOGENE C-ABL, P150;
COMPND 7 EC: 2.7.10.2;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ABL1, ABL, JTK7;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ABL, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.K.CLAWSON,C.GAO
REVDAT 4 06-MAR-24 6BL8 1 REMARK
REVDAT 3 04-DEC-19 6BL8 1 REMARK
REVDAT 2 16-MAY-18 6BL8 1 JRNL
REVDAT 1 07-MAR-18 6BL8 0
JRNL AUTH Y.MENG,C.GAO,D.K.CLAWSON,S.ATWELL,M.RUSSELL,M.VIETH,B.ROUX
JRNL TITL PREDICTING THE CONFORMATIONAL VARIABILITY OF ABL TYROSINE
JRNL TITL 2 KINASE USING MOLECULAR DYNAMICS SIMULATIONS AND MARKOV STATE
JRNL TITL 3 MODELS.
JRNL REF J CHEM THEORY COMPUT V. 14 2721 2018
JRNL REFN ISSN 1549-9626
JRNL PMID 29474075
JRNL DOI 10.1021/ACS.JCTC.7B01170
REMARK 2
REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.78
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 3 NUMBER OF REFLECTIONS : 27265
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.177
REMARK 3 R VALUE (WORKING SET) : 0.175
REMARK 3 FREE R VALUE : 0.204
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090
REMARK 3 FREE R VALUE TEST SET COUNT : 1388
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 14
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.59
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2900
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1950
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2743
REMARK 3 BIN R VALUE (WORKING SET) : 0.1920
REMARK 3 BIN FREE R VALUE : 0.2360
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4207
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 75
REMARK 3 SOLVENT ATOMS : 262
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 47.37
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.44
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.62150
REMARK 3 B22 (A**2) : -0.98860
REMARK 3 B33 (A**2) : 2.61010
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.340
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.213
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.315
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.210
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4449 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 6092 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1457 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 94 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 698 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4449 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 563 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 5237 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.09
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.26
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.42
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 33.6467 53.7417 15.8108
REMARK 3 T TENSOR
REMARK 3 T11: -0.1050 T22: -0.0867
REMARK 3 T33: -0.0594 T12: -0.0360
REMARK 3 T13: -0.0053 T23: 0.0087
REMARK 3 L TENSOR
REMARK 3 L11: 1.4665 L22: 0.8222
REMARK 3 L33: 2.1755 L12: 0.1077
REMARK 3 L13: 0.1016 L23: 0.1307
REMARK 3 S TENSOR
REMARK 3 S11: -0.0595 S12: 0.0207 S13: -0.1039
REMARK 3 S21: -0.0379 S22: -0.0150 S23: 0.0523
REMARK 3 S31: 0.0732 S32: -0.2438 S33: 0.0744
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 33.5840 82.9700 45.8152
REMARK 3 T TENSOR
REMARK 3 T11: -0.1565 T22: -0.0557
REMARK 3 T33: -0.0959 T12: 0.0044
REMARK 3 T13: 0.0247 T23: -0.1073
REMARK 3 L TENSOR
REMARK 3 L11: 3.4597 L22: 1.3414
REMARK 3 L33: 1.0713 L12: -0.1381
REMARK 3 L13: -0.9366 L23: -0.5196
REMARK 3 S TENSOR
REMARK 3 S11: -0.1256 S12: 0.5473 S13: -0.4504
REMARK 3 S21: -0.0502 S22: 0.0206 S23: 0.3879
REMARK 3 S31: 0.1430 S32: -0.4095 S33: 0.1050
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { I|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 31.7575 65.6145 21.5935
REMARK 3 T TENSOR
REMARK 3 T11: 0.0033 T22: 0.0203
REMARK 3 T33: -0.0092 T12: -0.0316
REMARK 3 T13: 0.0085 T23: -0.0354
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.0000
REMARK 3 L33: 1.6650 L12: 0.5344
REMARK 3 L13: 0.5811 L23: 1.7411
REMARK 3 S TENSOR
REMARK 3 S11: -0.0290 S12: -0.0794 S13: 0.1418
REMARK 3 S21: -0.1633 S22: 0.0018 S23: 0.0378
REMARK 3 S31: 0.1134 S32: -0.0396 S33: 0.0272
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6BL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-17.
REMARK 100 THE DEPOSITION ID IS D_1000231043.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 08-FEB-07
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 31-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97969
REMARK 200 MONOCHROMATOR : DIAMOND(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28182
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500
REMARK 200 RESOLUTION RANGE LOW (A) : 20.780
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 200 DATA REDUNDANCY : 5.200
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.13
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 5.6, 1850 MM
REMARK 280 AMMONIUM SULFATE, 140 MM POTASSIUM SODIUM TARTRATE, VAPOR
REMARK 280 DIFFUSION, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X+1/2,Y+1/2,-Z
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.92000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.52500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.92000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.52500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 503
REMARK 465 ASP A 504
REMARK 465 GLY B 250
REMARK 465 GLY B 251
REMARK 465 GLN B 252
REMARK 465 ALA B 397
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ASP A 233 CG OD1 OD2
REMARK 470 LYS A 234 CG CD CE NZ
REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 252 CG CD OE1 NE2
REMARK 470 ASP A 276 CG OD1 OD2
REMARK 470 GLU A 282 CG CD OE1 OE2
REMARK 470 LYS A 294 CD CE NZ
REMARK 470 ARG A 307 CD NE CZ NH1 NH2
REMARK 470 GLU A 308 CD OE1 OE2
REMARK 470 LYS A 356 CD CE NZ
REMARK 470 LYS A 400 CG CD CE NZ
REMARK 470 GLU A 450 CD OE1 OE2
REMARK 470 GLU A 462 CG CD OE1 OE2
REMARK 470 LYS A 467 CE NZ
REMARK 470 GLN A 498 CD OE1 NE2
REMARK 470 LYS B 234 CG CD CE NZ
REMARK 470 GLU B 238 CG CD OE1 OE2
REMARK 470 ARG B 239 CG CD NE CZ NH1 NH2
REMARK 470 THR B 240 OG1 CG2
REMARK 470 THR B 243 OG1 CG2
REMARK 470 LYS B 245 CD CE NZ
REMARK 470 HIS B 246 CG ND1 CD2 CE1 NE2
REMARK 470 LYS B 247 CG CD CE NZ
REMARK 470 TYR B 253 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 GLU B 255 CG CD OE1 OE2
REMARK 470 VAL B 260 CG1 CG2
REMARK 470 LYS B 262 CG CD CE NZ
REMARK 470 LYS B 263 CG CD CE NZ
REMARK 470 SER B 265 OG
REMARK 470 LYS B 271 CD CE NZ
REMARK 470 LYS B 274 CG CD CE NZ
REMARK 470 GLU B 279 CG CD OE1 OE2
REMARK 470 GLU B 281 CG CD OE1 OE2
REMARK 470 GLU B 282 CD OE1 OE2
REMARK 470 LYS B 285 CG CD CE NZ
REMARK 470 LYS B 294 CD CE NZ
REMARK 470 THR B 306 OG1 CG2
REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 308 CG CD OE1 OE2
REMARK 470 ASN B 331 CG OD1 ND2
REMARK 470 GLN B 333 CG CD OE1 NE2
REMARK 470 LYS B 356 CG CD CE NZ
REMARK 470 LYS B 400 CG CD CE NZ
REMARK 470 LYS B 415 CG CD CE NZ
REMARK 470 GLU B 462 CG CD OE1 OE2
REMARK 470 LYS B 467 CG CD CE NZ
REMARK 470 ASP B 504 CG OD1 OD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 252 -70.45 -40.78
REMARK 500 ASP A 276 -7.73 80.03
REMARK 500 ASP A 363 46.02 -148.32
REMARK 500 LEU B 248 75.47 -174.18
REMARK 500 GLU B 275 -56.21 -29.34
REMARK 500 CYS B 305 75.89 -118.52
REMARK 500 THR B 306 45.54 -102.14
REMARK 500 ARG B 307 -88.59 -119.15
REMARK 500 ARG B 362 -2.02 75.40
REMARK 500 ASP B 363 45.21 -146.43
REMARK 500 ILE B 502 40.69 -85.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PVB A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PVB B 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603
DBREF 6BL8 A 233 504 UNP P00519 ABL1_HUMAN 233 504
DBREF 6BL8 B 233 504 UNP P00519 ABL1_HUMAN 233 504
SEQADV 6BL8 SER A 336 UNP P00519 ASN 336 CONFLICT
SEQADV 6BL8 PHE A 393 UNP P00519 TYR 393 CONFLICT
SEQADV 6BL8 PRO A 445 UNP P00519 LEU 445 CONFLICT
SEQADV 6BL8 SER B 336 UNP P00519 ASN 336 CONFLICT
SEQADV 6BL8 PHE B 393 UNP P00519 TYR 393 CONFLICT
SEQADV 6BL8 PRO B 445 UNP P00519 LEU 445 CONFLICT
SEQRES 1 A 272 ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET LYS
SEQRES 2 A 272 HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR GLU
SEQRES 3 A 272 GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS
SEQRES 4 A 272 THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU
SEQRES 5 A 272 LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN
SEQRES 6 A 272 LEU VAL GLN LEU LEU GLY VAL CYS THR ARG GLU PRO PRO
SEQRES 7 A 272 PHE TYR ILE ILE THR GLU PHE MET THR TYR GLY ASN LEU
SEQRES 8 A 272 LEU ASP TYR LEU ARG GLU CYS ASN ARG GLN GLU VAL SER
SEQRES 9 A 272 ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SER
SEQRES 10 A 272 ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG
SEQRES 11 A 272 ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS
SEQRES 12 A 272 LEU VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET
SEQRES 13 A 272 THR GLY ASP THR PHE THR ALA HIS ALA GLY ALA LYS PHE
SEQRES 14 A 272 PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN
SEQRES 15 A 272 LYS PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL
SEQRES 16 A 272 LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR
SEQRES 17 A 272 PRO GLY ILE ASP PRO SER GLN VAL TYR GLU LEU LEU GLU
SEQRES 18 A 272 LYS ASP TYR ARG MET GLU ARG PRO GLU GLY CYS PRO GLU
SEQRES 19 A 272 LYS VAL TYR GLU LEU MET ARG ALA CYS TRP GLN TRP ASN
SEQRES 20 A 272 PRO SER ASP ARG PRO SER PHE ALA GLU ILE HIS GLN ALA
SEQRES 21 A 272 PHE GLU THR MET PHE GLN GLU SER SER ILE SER ASP
SEQRES 1 B 272 ASP LYS TRP GLU MET GLU ARG THR ASP ILE THR MET LYS
SEQRES 2 B 272 HIS LYS LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR GLU
SEQRES 3 B 272 GLY VAL TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS
SEQRES 4 B 272 THR LEU LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU
SEQRES 5 B 272 LYS GLU ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN
SEQRES 6 B 272 LEU VAL GLN LEU LEU GLY VAL CYS THR ARG GLU PRO PRO
SEQRES 7 B 272 PHE TYR ILE ILE THR GLU PHE MET THR TYR GLY ASN LEU
SEQRES 8 B 272 LEU ASP TYR LEU ARG GLU CYS ASN ARG GLN GLU VAL SER
SEQRES 9 B 272 ALA VAL VAL LEU LEU TYR MET ALA THR GLN ILE SER SER
SEQRES 10 B 272 ALA MET GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG
SEQRES 11 B 272 ASP LEU ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS
SEQRES 12 B 272 LEU VAL LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET
SEQRES 13 B 272 THR GLY ASP THR PHE THR ALA HIS ALA GLY ALA LYS PHE
SEQRES 14 B 272 PRO ILE LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN
SEQRES 15 B 272 LYS PHE SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL
SEQRES 16 B 272 LEU LEU TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR
SEQRES 17 B 272 PRO GLY ILE ASP PRO SER GLN VAL TYR GLU LEU LEU GLU
SEQRES 18 B 272 LYS ASP TYR ARG MET GLU ARG PRO GLU GLY CYS PRO GLU
SEQRES 19 B 272 LYS VAL TYR GLU LEU MET ARG ALA CYS TRP GLN TRP ASN
SEQRES 20 B 272 PRO SER ASP ARG PRO SER PHE ALA GLU ILE HIS GLN ALA
SEQRES 21 B 272 PHE GLU THR MET PHE GLN GLU SER SER ILE SER ASP
HET PVB A 601 55
HET SO4 A 602 5
HET PVB B 601 55
HET SO4 B 602 5
HET SO4 B 603 5
HETNAM PVB PURVALANOL B
HETNAM SO4 SULFATE ION
HETSYN PVB 2-CHLORO-4-{[2-{[(1R)-1-(HYDROXYMETHYL)-2-
HETSYN 2 PVB METHYLPROPYL]AMINO}-9-(1-METHYLETHYL)-9H-PURIN-6-
HETSYN 3 PVB YL]AMINO}BENZOIC ACID
FORMUL 3 PVB 2(C20 H25 CL N6 O3)
FORMUL 4 SO4 3(O4 S 2-)
FORMUL 8 HOH *262(H2 O)
HELIX 1 AA1 GLU A 238 THR A 240 5 3
HELIX 2 AA2 LYS A 263 SER A 265 5 3
HELIX 3 AA3 GLU A 279 LYS A 291 1 13
HELIX 4 AA4 ASN A 322 CYS A 330 1 9
HELIX 5 AA5 SER A 336 LYS A 357 1 22
HELIX 6 AA6 ALA A 365 ARG A 367 5 3
HELIX 7 AA7 GLU A 373 HIS A 375 5 3
HELIX 8 AA8 PRO A 402 THR A 406 5 5
HELIX 9 AA9 ALA A 407 ASN A 414 1 8
HELIX 10 AB1 SER A 417 THR A 434 1 18
HELIX 11 AB2 ASP A 444 SER A 446 5 3
HELIX 12 AB3 GLN A 447 LYS A 454 1 8
HELIX 13 AB4 PRO A 465 TRP A 476 1 12
HELIX 14 AB5 ASN A 479 ARG A 483 5 5
HELIX 15 AB6 SER A 485 ILE A 502 1 18
HELIX 16 AB7 GLU B 238 THR B 240 5 3
HELIX 17 AB8 LYS B 263 SER B 265 5 3
HELIX 18 AB9 GLU B 279 LYS B 291 1 13
HELIX 19 AC1 ASN B 322 CYS B 330 1 9
HELIX 20 AC2 SER B 336 LYS B 357 1 22
HELIX 21 AC3 ALA B 365 ARG B 367 5 3
HELIX 22 AC4 GLU B 373 HIS B 375 5 3
HELIX 23 AC5 PRO B 402 THR B 406 5 5
HELIX 24 AC6 ALA B 407 ASN B 414 1 8
HELIX 25 AC7 ILE B 418 THR B 434 1 17
HELIX 26 AC8 ASP B 444 SER B 446 5 3
HELIX 27 AC9 GLN B 447 LYS B 454 1 8
HELIX 28 AD1 PRO B 465 TRP B 476 1 12
HELIX 29 AD2 ASN B 479 ARG B 483 5 5
HELIX 30 AD3 SER B 485 SER B 500 1 16
SHEET 1 AA1 5 ILE A 242 GLY A 250 0
SHEET 2 AA1 5 GLU A 255 TRP A 261 -1 O GLU A 258 N HIS A 246
SHEET 3 AA1 5 LEU A 266 THR A 272 -1 O LEU A 266 N TRP A 261
SHEET 4 AA1 5 TYR A 312 GLU A 316 -1 O ILE A 313 N LYS A 271
SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N GLY A 303 O ILE A 314
SHEET 1 AA2 2 PHE A 359 ILE A 360 0
SHEET 2 AA2 2 SER A 385 ARG A 386 -1 O SER A 385 N ILE A 360
SHEET 1 AA3 2 CYS A 369 VAL A 371 0
SHEET 2 AA3 2 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370
SHEET 1 AA4 2 PHE A 393 THR A 394 0
SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N PHE A 393
SHEET 1 AA5 5 ILE B 242 LYS B 247 0
SHEET 2 AA5 5 GLU B 255 TRP B 261 -1 O GLU B 258 N LYS B 245
SHEET 3 AA5 5 LEU B 266 LEU B 273 -1 O THR B 272 N GLU B 255
SHEET 4 AA5 5 PHE B 311 GLU B 316 -1 O ILE B 313 N LYS B 271
SHEET 5 AA5 5 LEU B 301 CYS B 305 -1 N GLY B 303 O ILE B 314
SHEET 1 AA6 2 PHE B 359 ILE B 360 0
SHEET 2 AA6 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360
SHEET 1 AA7 2 CYS B 369 VAL B 371 0
SHEET 2 AA7 2 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370
SHEET 1 AA8 2 THR B 392 THR B 394 0
SHEET 2 AA8 2 LYS B 415 SER B 417 -1 O PHE B 416 N PHE B 393
CISPEP 1 PRO A 309 PRO A 310 0 -25.13
CISPEP 2 PRO B 309 PRO B 310 0 -0.74
SITE 1 AC1 16 LEU A 248 GLY A 250 ALA A 269 VAL A 299
SITE 2 AC1 16 THR A 315 GLU A 316 PHE A 317 MET A 318
SITE 3 AC1 16 THR A 319 GLY A 321 ASN A 322 LEU A 370
SITE 4 AC1 16 PHE A 382 HOH A 710 HOH A 798 HOH A 808
SITE 1 AC2 7 LYS A 245 HIS A 246 LYS A 247 HOH A 702
SITE 2 AC2 7 HOH A 725 GLN B 477 HOH B 703
SITE 1 AC3 9 LEU B 248 ALA B 269 THR B 315 GLU B 316
SITE 2 AC3 9 PHE B 317 MET B 318 THR B 319 GLY B 321
SITE 3 AC3 9 LEU B 370
SITE 1 AC4 5 ARG B 362 PHE B 393 ALA B 395 HIS B 396
SITE 2 AC4 5 HOH B 714
SITE 1 AC5 3 ARG B 460 GLU B 462 GLY B 463
CRYST1 105.840 131.050 57.020 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009448 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007631 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017538 0.00000