HEADER DNA BINDING PROTEIN/DNA 11-NOV-17 6BLW TITLE ZINC FINGER DOMAIN OF WT1(+KTS FORM) WITH M342R MUTATION AND 17+1MER TITLE 2 OLIGONUCLEOTIDE WITH TRIPLET GGT COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS TUMOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: WT33; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*GP*CP*GP*AP*AP*AP*TP*GP*GP*GP*AP*GP*GP*GP*TP*T)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*TP*TP*TP*CP*GP*C)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX WILMS TUMOR SUPPRESSOR PROTEIN ZINC-FINGERS, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 3 16-MAY-18 6BLW 1 JRNL REVDAT 2 17-JAN-18 6BLW 1 JRNL REVDAT 1 03-JAN-18 6BLW 0 JRNL AUTH D.WANG,J.R.HORTON,Y.ZHENG,R.M.BLUMENTHAL,X.ZHANG,X.CHENG JRNL TITL ROLE FOR FIRST ZINC FINGER OF WT1 IN DNA SEQUENCE JRNL TITL 2 SPECIFICITY: DENYS-DRASH SYNDROME-ASSOCIATED WT1 MUTANT IN JRNL TITL 3 ZF1 ENHANCES AFFINITY FOR A SUBSET OF WT1 BINDING SITES. JRNL REF NUCLEIC ACIDS RES. V. 46 3864 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29294058 JRNL DOI 10.1093/NAR/GKX1274 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 21595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6949 - 4.4190 0.99 2893 154 0.1803 0.2076 REMARK 3 2 4.4190 - 3.5093 1.00 2923 150 0.1787 0.2152 REMARK 3 3 3.5093 - 3.0662 1.00 2901 156 0.1983 0.2054 REMARK 3 4 3.0662 - 2.7861 1.00 2926 147 0.2756 0.2910 REMARK 3 5 2.7861 - 2.5865 1.00 2884 157 0.2688 0.2886 REMARK 3 6 2.5865 - 2.4341 1.00 2932 153 0.2597 0.3202 REMARK 3 7 2.4341 - 2.3123 1.00 2902 151 0.2829 0.3350 REMARK 3 8 2.3123 - 2.2116 1.00 2907 150 0.2838 0.2353 REMARK 3 9 2.2116 - 2.1265 1.00 2896 152 0.2905 0.3179 REMARK 3 10 2.1265 - 2.0532 0.99 2874 159 0.3091 0.3081 REMARK 3 11 2.0532 - 1.9890 0.95 2761 148 0.3366 0.3245 REMARK 3 12 1.9890 - 1.9321 0.88 2561 132 0.3395 0.3927 REMARK 3 13 1.9321 - 1.8813 0.81 2357 125 0.3640 0.4081 REMARK 3 14 1.8813 - 1.8354 0.59 1683 93 0.3635 0.4110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1672 REMARK 3 ANGLE : 0.523 2358 REMARK 3 CHIRALITY : 0.030 248 REMARK 3 PLANARITY : 0.003 189 REMARK 3 DIHEDRAL : 19.261 863 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5749 -10.1096 30.4837 REMARK 3 T TENSOR REMARK 3 T11: 0.4418 T22: 0.7645 REMARK 3 T33: 0.4348 T12: -0.1685 REMARK 3 T13: 0.0304 T23: 0.1095 REMARK 3 L TENSOR REMARK 3 L11: 0.3512 L22: 1.0192 REMARK 3 L33: 0.4332 L12: -0.4737 REMARK 3 L13: 0.3354 L23: -0.2368 REMARK 3 S TENSOR REMARK 3 S11: 0.3158 S12: -0.3579 S13: -0.1978 REMARK 3 S21: 0.3615 S22: -0.4444 S23: -0.3704 REMARK 3 S31: 0.2019 S32: -0.6836 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6925 -4.4615 24.9237 REMARK 3 T TENSOR REMARK 3 T11: 0.4652 T22: 0.8128 REMARK 3 T33: 0.3112 T12: 0.0972 REMARK 3 T13: 0.0484 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: 2.2225 L22: 7.5165 REMARK 3 L33: 1.5884 L12: 1.9436 REMARK 3 L13: 0.0053 L23: -3.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: 0.2342 S13: -0.3819 REMARK 3 S21: 0.2033 S22: -0.4847 S23: -0.3867 REMARK 3 S31: -1.3161 S32: -1.1785 S33: -0.6139 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1232 -1.6488 16.8791 REMARK 3 T TENSOR REMARK 3 T11: 0.4803 T22: 1.1658 REMARK 3 T33: 0.5251 T12: 0.1844 REMARK 3 T13: 0.1332 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1731 L22: 1.3232 REMARK 3 L33: 0.6032 L12: 0.4154 REMARK 3 L13: -0.1160 L23: 0.0810 REMARK 3 S TENSOR REMARK 3 S11: -0.3030 S12: -1.0220 S13: -0.2720 REMARK 3 S21: 0.1689 S22: 0.0417 S23: 0.2260 REMARK 3 S31: 0.1189 S32: -0.8924 S33: -0.1039 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1073 -3.9824 8.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.3589 T22: 0.6984 REMARK 3 T33: 0.4577 T12: -0.0127 REMARK 3 T13: 0.0536 T23: 0.0640 REMARK 3 L TENSOR REMARK 3 L11: 0.3025 L22: 0.1632 REMARK 3 L33: 0.1644 L12: 0.2443 REMARK 3 L13: -0.0520 L23: -0.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: -0.5181 S13: 0.1406 REMARK 3 S21: 0.0445 S22: 0.0489 S23: 0.4456 REMARK 3 S31: 0.5360 S32: -0.8766 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2531 -5.2705 3.2448 REMARK 3 T TENSOR REMARK 3 T11: 0.3429 T22: 0.4240 REMARK 3 T33: 0.3494 T12: -0.0324 REMARK 3 T13: 0.0178 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5316 L22: 0.5572 REMARK 3 L33: 0.0566 L12: 0.0488 REMARK 3 L13: -0.1748 L23: -0.0460 REMARK 3 S TENSOR REMARK 3 S11: -0.1702 S12: -0.2710 S13: -0.1423 REMARK 3 S21: -0.0511 S22: 0.0614 S23: -0.0258 REMARK 3 S31: 0.0762 S32: -0.2378 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 384 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8416 -13.4687 -5.4663 REMARK 3 T TENSOR REMARK 3 T11: 0.4197 T22: 0.4766 REMARK 3 T33: 0.4480 T12: 0.0213 REMARK 3 T13: 0.0663 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.1432 L22: 0.3842 REMARK 3 L33: 0.1716 L12: -0.1114 REMARK 3 L13: 0.0435 L23: 0.1862 REMARK 3 S TENSOR REMARK 3 S11: 0.1175 S12: 0.5514 S13: -0.1424 REMARK 3 S21: -0.2302 S22: -0.0689 S23: -0.3728 REMARK 3 S31: 0.1452 S32: 0.1080 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3631 -19.9254 -0.1867 REMARK 3 T TENSOR REMARK 3 T11: 0.3977 T22: 0.3519 REMARK 3 T33: 0.4948 T12: 0.0198 REMARK 3 T13: -0.0082 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 0.0596 L22: 0.0821 REMARK 3 L33: 0.1776 L12: 0.0121 REMARK 3 L13: -0.0170 L23: 0.1889 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.2951 S13: -0.5312 REMARK 3 S21: -0.0466 S22: -0.3813 S23: 0.8231 REMARK 3 S31: 0.3071 S32: 0.2850 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 408 THROUGH 422 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4761 -22.8347 -14.7810 REMARK 3 T TENSOR REMARK 3 T11: 1.2069 T22: 1.1543 REMARK 3 T33: 0.7482 T12: 0.2433 REMARK 3 T13: 0.0908 T23: -0.3822 REMARK 3 L TENSOR REMARK 3 L11: 4.2357 L22: 0.2989 REMARK 3 L33: 0.3267 L12: 0.7929 REMARK 3 L13: -0.6018 L23: -0.3089 REMARK 3 S TENSOR REMARK 3 S11: -0.2850 S12: 1.2447 S13: 0.3837 REMARK 3 S21: 1.2343 S22: 0.5972 S23: -1.0860 REMARK 3 S31: 0.9259 S32: -1.0902 S33: 0.0400 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2191 -14.8580 -16.8258 REMARK 3 T TENSOR REMARK 3 T11: 0.9696 T22: 1.0494 REMARK 3 T33: 0.9292 T12: 0.1330 REMARK 3 T13: 0.1584 T23: -0.1867 REMARK 3 L TENSOR REMARK 3 L11: 0.3362 L22: 0.0486 REMARK 3 L33: 0.2624 L12: -0.0005 REMARK 3 L13: 0.2855 L23: -0.0292 REMARK 3 S TENSOR REMARK 3 S11: -1.5429 S12: 0.7255 S13: 0.8376 REMARK 3 S21: -0.1133 S22: -0.1052 S23: 0.1163 REMARK 3 S31: -0.7351 S32: 0.6737 S33: -0.0251 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5821 -31.7985 -2.4905 REMARK 3 T TENSOR REMARK 3 T11: 0.8194 T22: 0.4873 REMARK 3 T33: 0.4877 T12: -0.1931 REMARK 3 T13: 0.1312 T23: -0.2513 REMARK 3 L TENSOR REMARK 3 L11: 0.2536 L22: 1.6616 REMARK 3 L33: 0.7174 L12: 0.1411 REMARK 3 L13: -0.1589 L23: -1.0493 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.8885 S13: -0.1005 REMARK 3 S21: 0.2914 S22: -0.8197 S23: -0.0280 REMARK 3 S31: 0.1415 S32: -0.4123 S33: -0.6360 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9261 -10.7879 12.3153 REMARK 3 T TENSOR REMARK 3 T11: 0.4551 T22: 0.4170 REMARK 3 T33: 0.4833 T12: -0.0516 REMARK 3 T13: -0.0014 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.4437 L22: 1.1667 REMARK 3 L33: 1.0382 L12: -0.5612 REMARK 3 L13: -0.4039 L23: -0.9091 REMARK 3 S TENSOR REMARK 3 S11: -0.1337 S12: -0.2112 S13: 0.0170 REMARK 3 S21: -0.1410 S22: -0.0253 S23: -0.2449 REMARK 3 S31: -0.1464 S32: -0.0822 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1481 1.9577 15.5227 REMARK 3 T TENSOR REMARK 3 T11: 0.4530 T22: 0.4583 REMARK 3 T33: 0.4320 T12: 0.0190 REMARK 3 T13: -0.0706 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.1211 L22: 0.4725 REMARK 3 L33: 0.2149 L12: 0.1114 REMARK 3 L13: 0.0051 L23: -0.2970 REMARK 3 S TENSOR REMARK 3 S11: 0.2580 S12: -0.0705 S13: -0.2180 REMARK 3 S21: 0.0358 S22: -0.3146 S23: -0.4852 REMARK 3 S31: -0.4993 S32: -0.8203 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5472 -16.3520 11.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.4373 T22: 0.3514 REMARK 3 T33: 0.4906 T12: -0.0228 REMARK 3 T13: -0.0282 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.3555 L22: 0.1010 REMARK 3 L33: 0.0374 L12: -0.1906 REMARK 3 L13: 0.1248 L23: -0.0681 REMARK 3 S TENSOR REMARK 3 S11: 0.3295 S12: -0.2664 S13: -0.3252 REMARK 3 S21: -0.4250 S22: -0.2825 S23: 0.0978 REMARK 3 S31: 0.2390 S32: -0.0124 S33: 0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8553 -22.9753 2.1647 REMARK 3 T TENSOR REMARK 3 T11: 0.5763 T22: 0.5091 REMARK 3 T33: 0.4520 T12: -0.2204 REMARK 3 T13: 0.0267 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 0.7934 L22: 0.1774 REMARK 3 L33: 0.1019 L12: 0.0607 REMARK 3 L13: -0.1516 L23: -0.0724 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.1709 S13: -0.5277 REMARK 3 S21: 0.0518 S22: -0.1054 S23: 0.1303 REMARK 3 S31: 0.4231 S32: -0.9145 S33: 0.0183 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9156 -28.9779 -10.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.7986 T22: 0.4637 REMARK 3 T33: 0.5395 T12: -0.2104 REMARK 3 T13: 0.2095 T23: -0.1697 REMARK 3 L TENSOR REMARK 3 L11: 2.1275 L22: 0.0213 REMARK 3 L33: 0.8660 L12: -0.2066 REMARK 3 L13: 1.3510 L23: -0.1239 REMARK 3 S TENSOR REMARK 3 S11: 1.3395 S12: -0.3994 S13: -0.1318 REMARK 3 S21: -0.8962 S22: -0.6074 S23: -0.2245 REMARK 3 S31: -0.0437 S32: -0.4381 S33: 0.1123 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000229846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.835 REMARK 200 RESOLUTION RANGE LOW (A) : 29.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 32.70 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 300 0.1M CHES:NAOH, PH 9.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.77600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.78600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.77600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.78600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.67000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.77600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.78600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.67000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.77600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.78600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 409 REMARK 465 SER A 410 REMARK 465 GLU A 411 REMARK 465 LYS A 412 REMARK 465 PRO A 413 REMARK 465 PHE A 414 REMARK 465 LYS A 423 REMARK 465 LYS A 424 REMARK 465 PHE A 425 REMARK 465 ALA A 426 REMARK 465 ARG A 427 REMARK 465 SER A 428 REMARK 465 ASP A 429 REMARK 465 GLU A 430 REMARK 465 ARG A 440 REMARK 465 DA B 1 REMARK 465 DA B 18 REMARK 465 DT C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 317 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 318 CG SD CE REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 MET A 324 CG SD CE REMARK 470 ASN A 331 CG OD1 ND2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 PHE A 357 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 GLU A 361 CG CD OE1 OE2 REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 470 LEU A 431 CG CD1 CD2 REMARK 470 VAL A 432 CG1 CG2 REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 436 CG OD1 ND2 REMARK 470 MET A 437 CG SD CE REMARK 470 GLN A 439 CG CD OE1 NE2 REMARK 470 DT C 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 360 -70.19 -117.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 325 SG REMARK 620 2 CYS A 330 SG 116.2 REMARK 620 3 HIS A 343 NE2 111.9 109.7 REMARK 620 4 HIS A 347 NE2 107.3 110.6 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 CYS A 360 SG 112.6 REMARK 620 3 HIS A 373 NE2 109.0 105.8 REMARK 620 4 HIS A 377 NE2 110.7 116.3 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 385 SG REMARK 620 2 CYS A 388 SG 114.0 REMARK 620 3 HIS A 401 NE2 113.6 95.9 REMARK 620 4 HIS A 405 NE2 111.1 114.1 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 416 SG REMARK 620 2 CYS A 421 SG 107.2 REMARK 620 3 HIS A 434 NE2 48.7 111.5 REMARK 620 4 HIS A 438 NE2 113.1 133.8 81.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 DBREF 6BLW A 319 440 UNP P19544 WT1_HUMAN 375 496 DBREF 6BLW B 1 18 PDB 6BLW 6BLW 1 18 DBREF 6BLW C 1 18 PDB 6BLW 6BLW 1 18 SEQADV 6BLW HIS A 317 UNP P19544 EXPRESSION TAG SEQADV 6BLW MET A 318 UNP P19544 EXPRESSION TAG SEQADV 6BLW ARG A 342 UNP P19544 MET 398 ENGINEERED MUTATION SEQRES 1 A 124 HIS MET GLU LYS ARG PRO PHE MET CYS ALA TYR PRO GLY SEQRES 2 A 124 CYS ASN LYS ARG TYR PHE LYS LEU SER HIS LEU GLN ARG SEQRES 3 A 124 HIS SER ARG LYS HIS THR GLY GLU LYS PRO TYR GLN CYS SEQRES 4 A 124 ASP PHE LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP SEQRES 5 A 124 GLN LEU LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS SEQRES 6 A 124 PRO PHE GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SEQRES 7 A 124 SER ASP HIS LEU LYS THR HIS THR ARG THR HIS THR GLY SEQRES 8 A 124 LYS THR SER GLU LYS PRO PHE SER CYS ARG TRP PRO SER SEQRES 9 A 124 CYS GLN LYS LYS PHE ALA ARG SER ASP GLU LEU VAL ARG SEQRES 10 A 124 HIS HIS ASN MET HIS GLN ARG SEQRES 1 B 18 DA DG DC DG DA DA DA DT DG DG DG DA DG SEQRES 2 B 18 DG DG DT DT DA SEQRES 1 C 18 DT DT DA DA DC DC DC DT DC DC DC DA DT SEQRES 2 C 18 DT DT DC DG DC HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET GOL A 509 6 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 4(ZN 2+) FORMUL 8 EDO 4(C2 H6 O2) FORMUL 12 GOL C3 H8 O3 FORMUL 13 HOH *71(H2 O) HELIX 1 AA1 LYS A 336 GLY A 349 1 14 HELIX 2 AA2 ARG A 366 GLY A 379 1 14 HELIX 3 AA3 ARG A 394 THR A 402 1 9 HELIX 4 AA4 THR A 402 LYS A 408 1 7 HELIX 5 AA5 VAL A 432 HIS A 438 1 7 SHEET 1 AA1 2 PHE A 323 MET A 324 0 SHEET 2 AA1 2 ARG A 333 TYR A 334 -1 O TYR A 334 N PHE A 323 SHEET 1 AA2 2 TYR A 353 GLN A 354 0 SHEET 2 AA2 2 ARG A 363 PHE A 364 -1 O PHE A 364 N TYR A 353 SHEET 1 AA3 2 PHE A 383 GLN A 384 0 SHEET 2 AA3 2 LYS A 391 PHE A 392 -1 O PHE A 392 N PHE A 383 LINK SG CYS A 325 ZN ZN A 503 1555 1555 2.29 LINK SG CYS A 330 ZN ZN A 503 1555 1555 2.28 LINK NE2 HIS A 343 ZN ZN A 503 1555 1555 2.03 LINK NE2 HIS A 347 ZN ZN A 503 1555 1555 2.01 LINK SG CYS A 355 ZN ZN A 501 1555 1555 2.26 LINK SG CYS A 360 ZN ZN A 501 1555 1555 2.26 LINK NE2 HIS A 373 ZN ZN A 501 1555 1555 2.02 LINK NE2 HIS A 377 ZN ZN A 501 1555 1555 2.03 LINK SG CYS A 385 ZN ZN A 502 1555 1555 2.34 LINK SG CYS A 388 ZN ZN A 502 1555 1555 2.27 LINK NE2 HIS A 401 ZN ZN A 502 1555 1555 2.03 LINK NE2 HIS A 405 ZN ZN A 502 1555 1555 2.03 LINK SG CYS A 416 NE2 HIS A 434 1555 1555 1.84 LINK SG CYS A 416 ZN ZN A 504 1555 1555 2.38 LINK SG CYS A 421 ZN ZN A 504 1555 1555 2.22 LINK NE2 HIS A 434 ZN ZN A 504 1555 1555 2.01 LINK NE2 HIS A 438 ZN ZN A 504 1555 1555 2.03 SITE 1 AC1 4 CYS A 355 CYS A 360 HIS A 373 HIS A 377 SITE 1 AC2 4 CYS A 385 CYS A 388 HIS A 401 HIS A 405 SITE 1 AC3 4 CYS A 325 CYS A 330 HIS A 343 HIS A 347 SITE 1 AC4 4 CYS A 416 CYS A 421 HIS A 434 HIS A 438 SITE 1 AC5 5 LYS A 381 SER A 393 HIS A 397 DT B 8 SITE 2 AC5 5 DG B 9 SITE 1 AC6 7 ARG A 372 SER A 393 ARG A 394 HIS A 397 SITE 2 AC6 7 DT B 8 DG B 9 HOH B 103 SITE 1 AC7 7 ARG A 366 ASP A 368 ARG A 372 DA B 12 SITE 2 AC7 7 DG B 13 HOH B 108 DC C 7 SITE 1 AC8 5 LYS A 371 LYS A 381 DC C 5 DC C 6 SITE 2 AC8 5 HOH C 108 SITE 1 AC9 2 LEU A 431 VAL A 432 CRYST1 63.552 95.572 83.340 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015735 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011999 0.00000