HEADER OXIDOREDUCTASE 14-NOV-17 6BMB TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS DEHYDROQUINATE DEHYDRATASE-SHIKIMATE TITLE 2 DEHYDROGENASE (T381G MUTANT) IN COMPLEX WITH TARTRATE AND SHIKIMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE COMPND 3 DEHYDROGENASE, CHLOROPLASTIC; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DHQ-SDH PROTEIN,DHQASE-SORASE,PROTEIN EMBRYO DEFECTIVE 3004; COMPND 6 EC: 4.2.1.10,1.1.1.25; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: EMB3004, AT3G06350, F24P17.18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ARABIDOPSIS SHIKIMATE DEHYDROGENASE, NADP+, TARTRATE, SHIKIMATE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.CHRISTENDAT,J.PEEK REVDAT 5 04-OCT-23 6BMB 1 REMARK REVDAT 4 08-JAN-20 6BMB 1 REMARK REVDAT 3 03-JUL-19 6BMB 1 JRNL REVDAT 2 17-JAN-18 6BMB 1 REMARK REVDAT 1 20-DEC-17 6BMB 0 JRNL AUTH A.GRITSUNOV,J.PEEK,J.DIAZ CABALLERO,D.GUTTMAN,D.CHRISTENDAT JRNL TITL STRUCTURAL AND BIOCHEMICAL APPROACHES UNCOVER MULTIPLE JRNL TITL 2 EVOLUTIONARY TRAJECTORIES OF PLANT QUINATE DEHYDROGENASES. JRNL REF PLANT J. 2018 JRNL REFN ESSN 1365-313X JRNL PMID 29890023 JRNL DOI 10.1111/TPJ.13989 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 33026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6299 - 4.7502 0.99 3183 160 0.1910 0.2295 REMARK 3 2 4.7502 - 3.7724 0.98 2996 179 0.1679 0.2331 REMARK 3 3 3.7724 - 3.2961 0.97 2952 164 0.1973 0.2468 REMARK 3 4 3.2961 - 2.9950 0.95 2883 128 0.2314 0.2742 REMARK 3 5 2.9950 - 2.7805 0.90 2727 124 0.2487 0.3144 REMARK 3 6 2.7805 - 2.6166 0.85 2568 112 0.2616 0.3197 REMARK 3 7 2.6166 - 2.4856 0.82 2449 148 0.2590 0.3780 REMARK 3 8 2.4856 - 2.3775 0.79 2383 122 0.2625 0.3266 REMARK 3 9 2.3775 - 2.2860 0.80 2385 132 0.2623 0.3804 REMARK 3 10 2.2860 - 2.2071 0.76 2282 114 0.2648 0.3312 REMARK 3 11 2.2071 - 2.1381 0.78 2347 114 0.2679 0.3149 REMARK 3 12 2.1381 - 2.0770 0.76 2244 130 0.2848 0.3186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3911 REMARK 3 ANGLE : 0.971 5292 REMARK 3 CHIRALITY : 0.053 605 REMARK 3 PLANARITY : 0.006 680 REMARK 3 DIHEDRAL : 14.140 2343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.077 REMARK 200 RESOLUTION RANGE LOW (A) : 31.626 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 4.8, AND 2 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.14000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.57000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.57000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -38.57000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 900 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1001 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1006 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 GLY A 439 REMARK 465 ASP A 440 REMARK 465 PRO A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 VAL A 444 REMARK 465 PRO A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 SER A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 LEU A 451 REMARK 465 ALA A 452 REMARK 465 SER A 453 REMARK 465 LYS A 454 REMARK 465 ALA A 489 REMARK 465 LEU A 490 REMARK 465 GLY A 498 REMARK 465 LYS A 499 REMARK 465 HIS A 510 REMARK 465 PRO A 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 LYS A 475 CB CG CD CE NZ REMARK 470 LYS A 478 CB CG CD CE NZ REMARK 470 LEU A 492 CG CD1 CD2 REMARK 470 GLU A 494 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 184 OH TYR A 288 2.07 REMARK 500 O TYR A 509 O HOH A 801 2.09 REMARK 500 O11 TLA A 703 O HOH A 802 2.10 REMARK 500 O HOH A 1005 O HOH A 1082 2.10 REMARK 500 OD2 ASP A 507 O HOH A 803 2.11 REMARK 500 O HOH A 1036 O HOH A 1108 2.12 REMARK 500 OD2 ASP A 312 O HOH A 804 2.14 REMARK 500 O HOH A 924 O HOH A 1026 2.14 REMARK 500 O HOH A 881 O HOH A 1077 2.14 REMARK 500 NZ LYS A 144 O HOH A 805 2.15 REMARK 500 O LEU A 136 O HOH A 806 2.16 REMARK 500 O HOH A 1047 O HOH A 1049 2.16 REMARK 500 O LEU A 435 O HOH A 807 2.17 REMARK 500 O HOH A 950 O HOH A 1092 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 540 CD LYS A 540 CE -0.219 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 488 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 91 -139.96 43.40 REMARK 500 PRO A 93 154.70 -47.87 REMARK 500 GLU A 137 -65.68 137.90 REMARK 500 VAL A 264 138.54 -170.09 REMARK 500 LYS A 298 58.47 -102.67 REMARK 500 LYS A 331 107.47 -163.33 REMARK 500 VAL A 333 -16.95 -140.79 REMARK 500 VAL A 479 -151.55 -147.16 REMARK 500 ALA A 495 -8.37 -59.48 REMARK 500 LEU A 501 118.26 -174.17 REMARK 500 ASN A 508 94.11 -66.39 REMARK 500 MET A 515 -152.81 -106.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 479 VAL A 480 -146.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1110 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1112 DISTANCE = 7.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SKM A 704 DBREF 6BMB A 90 603 UNP Q9SQT8 DHQSD_ARATH 90 603 SEQADV 6BMB GLY A 381 UNP Q9SQT8 THR 381 ENGINEERED MUTATION SEQADV 6BMB GLY A 604 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB SER A 605 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB ARG A 606 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB GLU A 607 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB ASN A 608 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB LEU A 609 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB TYR A 610 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB PHE A 611 UNP Q9SQT8 EXPRESSION TAG SEQADV 6BMB GLN A 612 UNP Q9SQT8 EXPRESSION TAG SEQRES 1 A 523 VAL LYS ASN PRO SER LEU ILE CYS ALA PRO VAL MET ALA SEQRES 2 A 523 ASP SER ILE ASP LYS MET VAL ILE GLU THR SER LYS ALA SEQRES 3 A 523 HIS GLU LEU GLY ALA ASP LEU VAL GLU ILE ARG LEU ASP SEQRES 4 A 523 TRP LEU LYS ASP PHE ASN PRO LEU GLU ASP LEU LYS THR SEQRES 5 A 523 ILE ILE LYS LYS SER PRO LEU PRO THR LEU PHE THR TYR SEQRES 6 A 523 ARG PRO LYS TRP GLU GLY GLY GLN TYR GLU GLY ASP GLU SEQRES 7 A 523 ASN GLU ARG ARG ASP VAL LEU ARG LEU ALA MET GLU LEU SEQRES 8 A 523 GLY ALA ASP TYR ILE ASP VAL GLU LEU GLN VAL ALA SER SEQRES 9 A 523 GLU PHE ILE LYS SER ILE ASP GLY LYS LYS PRO GLY LYS SEQRES 10 A 523 PHE LYS VAL ILE VAL SER SER HIS ASN TYR GLN ASN THR SEQRES 11 A 523 PRO SER VAL GLU ASP LEU ASP GLY LEU VAL ALA ARG ILE SEQRES 12 A 523 GLN GLN THR GLY ALA ASP ILE VAL LYS ILE ALA THR THR SEQRES 13 A 523 ALA VAL ASP ILE ALA ASP VAL ALA ARG MET PHE HIS ILE SEQRES 14 A 523 THR SER LYS ALA GLN VAL PRO THR ILE GLY LEU VAL MET SEQRES 15 A 523 GLY GLU ARG GLY LEU MET SER ARG ILE LEU CYS SER LYS SEQRES 16 A 523 PHE GLY GLY TYR LEU THR PHE GLY THR LEU ASP SER SER SEQRES 17 A 523 LYS VAL SER ALA PRO GLY GLN PRO THR ILE LYS ASP LEU SEQRES 18 A 523 LEU ASP LEU TYR ASN PHE ARG ARG ILE GLY PRO ASP THR SEQRES 19 A 523 LYS VAL TYR GLY ILE ILE GLY LYS PRO VAL SER HIS SER SEQRES 20 A 523 LYS SER PRO ILE VAL HIS ASN GLN ALA PHE LYS SER VAL SEQRES 21 A 523 ASP PHE ASN GLY VAL TYR VAL HIS LEU LEU VAL ASP ASN SEQRES 22 A 523 LEU VAL SER PHE LEU GLN ALA TYR SER SER SER ASP PHE SEQRES 23 A 523 ALA GLY PHE SER CYS GLY ILE PRO HIS LYS GLU ALA ALA SEQRES 24 A 523 LEU GLN CYS CYS ASP GLU VAL ASP PRO LEU ALA LYS SER SEQRES 25 A 523 ILE GLY ALA VAL ASN THR ILE LEU ARG ARG LYS SER ASP SEQRES 26 A 523 GLY LYS LEU LEU GLY TYR ASN THR ASP CYS ILE GLY SER SEQRES 27 A 523 ILE SER ALA ILE GLU ASP GLY LEU ARG SER SER GLY ASP SEQRES 28 A 523 PRO SER SER VAL PRO SER SER SER SER PRO LEU ALA SER SEQRES 29 A 523 LYS THR VAL VAL VAL ILE GLY ALA GLY GLY ALA GLY LYS SEQRES 30 A 523 ALA LEU ALA TYR GLY ALA LYS GLU LYS GLY ALA LYS VAL SEQRES 31 A 523 VAL ILE ALA ASN ARG THR TYR GLU ARG ALA LEU GLU LEU SEQRES 32 A 523 ALA GLU ALA ILE GLY GLY LYS ALA LEU SER LEU THR ASP SEQRES 33 A 523 LEU ASP ASN TYR HIS PRO GLU ASP GLY MET VAL LEU ALA SEQRES 34 A 523 ASN THR THR SER MET GLY MET GLN PRO ASN VAL GLU GLU SEQRES 35 A 523 THR PRO ILE SER LYS ASP ALA LEU LYS HIS TYR ALA LEU SEQRES 36 A 523 VAL PHE ASP ALA VAL TYR THR PRO ARG ILE THR ARG LEU SEQRES 37 A 523 LEU ARG GLU ALA GLU GLU SER GLY ALA ILE THR VAL SER SEQRES 38 A 523 GLY SER GLU MET PHE VAL ARG GLN ALA TYR GLU GLN PHE SEQRES 39 A 523 GLU ILE PHE THR GLY LEU PRO ALA PRO LYS GLU LEU TYR SEQRES 40 A 523 TRP GLN ILE MET SER LYS TYR GLY SER ARG GLU ASN LEU SEQRES 41 A 523 TYR PHE GLN HET SO4 A 701 5 HET SO4 A 702 5 HET TLA A 703 10 HET SKM A 704 12 HETNAM SO4 SULFATE ION HETNAM TLA L(+)-TARTARIC ACID HETNAM SKM (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC HETNAM 2 SKM ACID HETSYN SKM SHIKIMATE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 TLA C4 H6 O6 FORMUL 5 SKM C7 H10 O5 FORMUL 6 HOH *312(H2 O) HELIX 1 AA1 SER A 104 GLY A 119 1 16 HELIX 2 AA2 ASP A 128 LEU A 130 5 3 HELIX 3 AA3 ASN A 134 SER A 146 1 13 HELIX 4 AA4 PRO A 156 GLY A 160 5 5 HELIX 5 AA5 ASP A 166 GLY A 181 1 16 HELIX 6 AA6 LEU A 189 ASP A 200 1 12 HELIX 7 AA7 SER A 221 THR A 235 1 15 HELIX 8 AA8 ALA A 250 ALA A 262 1 13 HELIX 9 AA9 GLY A 272 GLY A 275 5 4 HELIX 10 AB1 LEU A 276 LEU A 281 1 6 HELIX 11 AB2 LEU A 281 GLY A 286 1 6 HELIX 12 AB3 THR A 306 LEU A 313 1 8 HELIX 13 AB4 ASN A 315 ILE A 319 5 5 HELIX 14 AB5 LYS A 337 VAL A 349 1 13 HELIX 15 AB6 ASN A 362 TYR A 370 1 9 HELIX 16 AB7 HIS A 384 CYS A 392 1 9 HELIX 17 AB8 ASP A 396 GLY A 403 1 8 HELIX 18 AB9 THR A 422 LEU A 435 1 14 HELIX 19 AC1 GLY A 462 LYS A 475 1 14 HELIX 20 AC2 LEU A 492 GLY A 497 1 6 HELIX 21 AC3 SER A 502 LEU A 506 5 5 HELIX 22 AC4 SER A 535 LYS A 540 5 6 HELIX 23 AC5 THR A 555 SER A 564 1 10 HELIX 24 AC6 SER A 570 GLY A 588 1 19 HELIX 25 AC7 PRO A 592 GLY A 604 1 13 SHEET 1 AA1 8 THR A 266 MET A 271 0 SHEET 2 AA1 8 ILE A 239 THR A 245 1 N VAL A 240 O ILE A 267 SHEET 3 AA1 8 LYS A 208 HIS A 214 1 N SER A 213 O ALA A 243 SHEET 4 AA1 8 TYR A 184 GLU A 188 1 N ILE A 185 O ILE A 210 SHEET 5 AA1 8 THR A 150 THR A 153 1 N PHE A 152 O ASP A 186 SHEET 6 AA1 8 LEU A 122 ARG A 126 1 N ILE A 125 O LEU A 151 SHEET 7 AA1 8 LEU A 95 VAL A 100 1 N VAL A 100 O GLU A 124 SHEET 8 AA1 8 LEU A 289 PHE A 291 1 O THR A 290 N CYS A 97 SHEET 1 AA2 6 GLY A 353 LEU A 359 0 SHEET 2 AA2 6 LYS A 324 GLY A 330 1 N TYR A 326 O VAL A 354 SHEET 3 AA2 6 PHE A 375 CYS A 380 1 O SER A 379 N ILE A 329 SHEET 4 AA2 6 THR A 407 ARG A 411 -1 O ILE A 408 N PHE A 378 SHEET 5 AA2 6 LYS A 416 TYR A 420 -1 O LEU A 418 N LEU A 409 SHEET 6 AA2 6 GLU A 394 VAL A 395 1 N GLU A 394 O GLY A 419 SHEET 1 AA3 5 ILE A 481 ALA A 482 0 SHEET 2 AA3 5 VAL A 456 ILE A 459 1 N VAL A 458 O ALA A 482 SHEET 3 AA3 5 MET A 515 ASN A 519 1 O ALA A 518 N VAL A 457 SHEET 4 AA3 5 TYR A 542 ASP A 547 1 O ALA A 543 N MET A 515 SHEET 5 AA3 5 ILE A 567 VAL A 569 1 O ILE A 567 N ALA A 543 CISPEP 1 LYS A 331 PRO A 332 0 -2.32 CISPEP 2 ILE A 382 PRO A 383 0 -2.33 CISPEP 3 GLN A 526 PRO A 527 0 3.70 CISPEP 4 THR A 551 PRO A 552 0 7.21 SITE 1 AC1 10 GLY A 381 ILE A 382 PRO A 383 HIS A 384 SITE 2 AC1 10 LYS A 385 GLU A 386 GLY A 462 GLY A 463 SITE 3 AC1 10 HOH A 814 HOH A 842 SITE 1 AC2 5 PRO A 332 PRO A 527 HOH A 861 HOH A 887 SITE 2 AC2 5 HOH A 971 SITE 1 AC3 10 ARG A 155 HIS A 214 LYS A 241 MET A 271 SITE 2 AC3 10 ARG A 279 PHE A 291 ALA A 301 GLN A 304 SITE 3 AC3 10 HOH A 802 HOH A 937 SITE 1 AC4 11 ILE A 328 SER A 336 SER A 338 SER A 379 SITE 2 AC4 11 LYS A 385 ASN A 406 ASP A 423 TYR A 550 SITE 3 AC4 11 GLN A 578 GLN A 582 HOH A 885 CRYST1 96.620 96.620 115.710 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010350 0.005975 0.000000 0.00000 SCALE2 0.000000 0.011951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008642 0.00000