HEADER OXIDOREDUCTASE/INHIBITOR 15-NOV-17 6BMT TITLE CRYSTAL STRUCTURE OF A RECOMBINANT FORM OF HUMAN MYELOPEROXIDASE BOUND TITLE 2 TO AN INHIBITOR FROM STAPHYLOCOCCUS DELPHINI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELOPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MPO; COMPND 5 EC: 1.11.2.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPO; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: NS0; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS DELPHINI; SOURCE 12 ORGANISM_TAXID: 53344; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYELOPEROXIDASE, PHAGOLYSOSOME, STAPHYLOCOCCAL INHIBITOR, INNATE KEYWDS 2 IMMUNITY, OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.T.PLOSCARIU,B.V.GEISBRECHT REVDAT 6 04-OCT-23 6BMT 1 HETSYN REVDAT 5 29-JUL-20 6BMT 1 COMPND REMARK HETNAM SITE REVDAT 4 01-JAN-20 6BMT 1 REMARK REVDAT 3 28-MAR-18 6BMT 1 JRNL REVDAT 2 21-MAR-18 6BMT 1 JRNL REVDAT 1 03-JAN-18 6BMT 0 JRNL AUTH N.T.PLOSCARIU,N.W.M.DE JONG,K.P.M.VAN KESSEL, JRNL AUTH 2 J.A.G.VAN STRIJP,B.V.GEISBRECHT JRNL TITL IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF A NOVEL JRNL TITL 2 MYELOPEROXIDASE INHIBITOR FROM STAPHYLOCOCCUS DELPHINI. JRNL REF ARCH. BIOCHEM. BIOPHYS. V. 645 1 2018 JRNL REFN ESSN 1096-0384 JRNL PMID 29524428 JRNL DOI 10.1016/J.ABB.2018.03.007 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 36188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3450 - 5.6478 1.00 2967 167 0.1742 0.1794 REMARK 3 2 5.6478 - 4.4841 1.00 2859 158 0.1493 0.1518 REMARK 3 3 4.4841 - 3.9177 1.00 2814 155 0.1413 0.1861 REMARK 3 4 3.9177 - 3.5596 1.00 2814 147 0.1704 0.2094 REMARK 3 5 3.5596 - 3.3046 1.00 2776 153 0.1994 0.2643 REMARK 3 6 3.3046 - 3.1098 0.99 2734 154 0.2223 0.2723 REMARK 3 7 3.1098 - 2.9541 0.97 2701 147 0.2242 0.2548 REMARK 3 8 2.9541 - 2.8255 0.96 2655 149 0.2325 0.3096 REMARK 3 9 2.8255 - 2.7167 0.94 2612 141 0.2285 0.2712 REMARK 3 10 2.7167 - 2.6230 0.92 2547 137 0.2220 0.2749 REMARK 3 11 2.6230 - 2.5410 0.88 2429 144 0.2535 0.3275 REMARK 3 12 2.5410 - 2.4684 0.85 2333 126 0.2717 0.3539 REMARK 3 13 2.4684 - 2.4034 0.75 2066 103 0.2928 0.3175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5362 REMARK 3 ANGLE : 1.480 7301 REMARK 3 CHIRALITY : 0.066 787 REMARK 3 PLANARITY : 0.013 964 REMARK 3 DIHEDRAL : 19.530 2056 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5-4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38189 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 1.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5UZU REMARK 200 REMARK 200 REMARK: RHOMBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ACETATE, PH 4.5-4.6, 25% W/V REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.31300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.83050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.33700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.83050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.31300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.33700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 PHE A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 10 REMARK 465 CYS A 11 REMARK 465 MET A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 CYS A 18 REMARK 465 TRP A 19 REMARK 465 ALA A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 THR A 24 REMARK 465 ALA A 25 REMARK 465 GLU A 26 REMARK 465 MET A 27 REMARK 465 LYS A 28 REMARK 465 LEU A 29 REMARK 465 LEU A 30 REMARK 465 LEU A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 ALA A 34 REMARK 465 GLY A 35 REMARK 465 LEU A 36 REMARK 465 LEU A 37 REMARK 465 ALA A 38 REMARK 465 ILE A 39 REMARK 465 LEU A 40 REMARK 465 ALA A 41 REMARK 465 THR A 42 REMARK 465 PRO A 43 REMARK 465 GLN A 44 REMARK 465 PRO A 45 REMARK 465 SER A 46 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 ALA A 52 REMARK 465 VAL A 53 REMARK 465 LEU A 54 REMARK 465 GLY A 55 REMARK 465 GLU A 56 REMARK 465 VAL A 57 REMARK 465 ASP A 58 REMARK 465 THR A 59 REMARK 465 SER A 60 REMARK 465 LEU A 61 REMARK 465 VAL A 62 REMARK 465 LEU A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 MET A 66 REMARK 465 GLU A 67 REMARK 465 GLU A 68 REMARK 465 ALA A 69 REMARK 465 LYS A 70 REMARK 465 GLN A 71 REMARK 465 LEU A 72 REMARK 465 VAL A 73 REMARK 465 ASP A 74 REMARK 465 LYS A 75 REMARK 465 ALA A 76 REMARK 465 TYR A 77 REMARK 465 LYS A 78 REMARK 465 GLU A 79 REMARK 465 ARG A 80 REMARK 465 ARG A 81 REMARK 465 GLU A 82 REMARK 465 SER A 83 REMARK 465 ILE A 84 REMARK 465 LYS A 85 REMARK 465 GLN A 86 REMARK 465 ARG A 87 REMARK 465 LEU A 88 REMARK 465 ARG A 89 REMARK 465 SER A 90 REMARK 465 GLY A 91 REMARK 465 SER A 92 REMARK 465 ALA A 93 REMARK 465 SER A 94 REMARK 465 PRO A 95 REMARK 465 MET A 96 REMARK 465 GLU A 97 REMARK 465 LEU A 98 REMARK 465 LEU A 99 REMARK 465 SER A 100 REMARK 465 TYR A 101 REMARK 465 PHE A 102 REMARK 465 LYS A 103 REMARK 465 GLN A 104 REMARK 465 PRO A 105 REMARK 465 VAL A 106 REMARK 465 ALA A 107 REMARK 465 ALA A 108 REMARK 465 THR A 109 REMARK 465 ARG A 110 REMARK 465 THR A 111 REMARK 465 ALA A 112 REMARK 465 VAL A 113 REMARK 465 ARG A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ASP A 117 REMARK 465 TYR A 118 REMARK 465 LEU A 119 REMARK 465 HIS A 120 REMARK 465 VAL A 121 REMARK 465 ALA A 122 REMARK 465 LEU A 123 REMARK 465 ASP A 124 REMARK 465 LEU A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 LEU A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 LEU A 133 REMARK 465 TRP A 134 REMARK 465 ARG A 135 REMARK 465 ARG A 136 REMARK 465 PRO A 137 REMARK 465 PHE A 138 REMARK 465 ASN A 139 REMARK 465 VAL A 140 REMARK 465 THR A 141 REMARK 465 ASP A 142 REMARK 465 VAL A 143 REMARK 465 LEU A 144 REMARK 465 THR A 145 REMARK 465 PRO A 146 REMARK 465 ALA A 147 REMARK 465 GLN A 148 REMARK 465 LEU A 149 REMARK 465 ASN A 150 REMARK 465 VAL A 151 REMARK 465 LEU A 152 REMARK 465 SER A 153 REMARK 465 LYS A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 CYS A 158 REMARK 465 ALA A 159 REMARK 465 TYR A 160 REMARK 465 GLN A 161 REMARK 465 ASP A 162 REMARK 465 VAL A 163 REMARK 465 GLY A 164 REMARK 465 VAL A 165 REMARK 465 ARG A 272 REMARK 465 ALA A 273 REMARK 465 SER A 274 REMARK 465 PHE A 275 REMARK 465 VAL A 276 REMARK 465 THR A 277 REMARK 465 SER A 745 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 THR B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 PHE B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 THR B 16 REMARK 465 GLY B 17 REMARK 465 ILE B 18 REMARK 465 PHE B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 SER B 22 REMARK 465 ASN B 23 REMARK 465 GLU B 24 REMARK 465 ALA B 25 REMARK 465 ASN B 26 REMARK 465 ALA B 27 REMARK 465 HIS B 98 REMARK 465 LEU B 99 REMARK 465 ILE B 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 260 CMD HEM A 802 1.58 REMARK 500 ND2 ASN A 483 C1 NAG A 804 1.73 REMARK 500 ND2 ASN A 355 C1 NAG A 805 1.81 REMARK 500 ND2 ASN A 391 C1 NAG A 806 1.82 REMARK 500 ND2 ASN A 391 O5 NAG A 806 2.14 REMARK 500 OE2 GLU A 408 CMB HEM A 802 2.16 REMARK 500 ND2 ASN A 483 O5 NAG A 804 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 207 -10.53 -166.51 REMARK 500 SER A 208 -38.89 -158.94 REMARK 500 ASP A 240 -60.35 -13.23 REMARK 500 ARG A 302 -37.75 -130.56 REMARK 500 ASP A 384 58.27 -118.76 REMARK 500 ASN A 391 88.98 -155.85 REMARK 500 SER A 481 175.03 172.08 REMARK 500 ALA A 533 69.37 -104.40 REMARK 500 ASN A 623 90.08 -166.48 REMARK 500 ASN A 721 11.05 -146.11 REMARK 500 ASN B 58 52.21 -102.33 REMARK 500 ASN B 60 105.67 -49.77 REMARK 500 LYS B 95 -12.46 77.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 804 REMARK 610 NAG A 805 REMARK 610 NAG A 806 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 262 O REMARK 620 2 ASP A 262 OD1 73.1 REMARK 620 3 THR A 334 O 72.3 143.7 REMARK 620 4 THR A 334 OG1 126.5 143.8 69.3 REMARK 620 5 PHE A 336 O 111.1 83.8 98.7 110.2 REMARK 620 6 ASP A 338 OD1 146.0 75.5 140.6 75.2 78.0 REMARK 620 7 SER A 340 OG 80.6 72.3 112.0 80.9 149.3 77.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 502 NE2 REMARK 620 2 HEM A 802 NA 109.7 REMARK 620 3 HEM A 802 NB 94.6 85.0 REMARK 620 4 HEM A 802 NC 91.1 158.0 86.4 REMARK 620 5 HEM A 802 ND 100.4 92.9 164.7 90.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UZU RELATED DB: PDB REMARK 900 RECOMBINANT HUMAN MPO BOUND TO A HOMOLOGOUS INHIBITOR FROM REMARK 900 STAPHYLOCOCCUS AUREUS DBREF 6BMT A 1 745 UNP P05164 PERM_HUMAN 1 745 DBREF 6BMT B -4 100 PDB 6BMT 6BMT -4 100 SEQRES 1 A 745 MET GLY VAL PRO PHE PHE SER SER LEU ARG CYS MET VAL SEQRES 2 A 745 ASP LEU GLY PRO CYS TRP ALA GLY GLY LEU THR ALA GLU SEQRES 3 A 745 MET LYS LEU LEU LEU ALA LEU ALA GLY LEU LEU ALA ILE SEQRES 4 A 745 LEU ALA THR PRO GLN PRO SER GLU GLY ALA ALA PRO ALA SEQRES 5 A 745 VAL LEU GLY GLU VAL ASP THR SER LEU VAL LEU SER SER SEQRES 6 A 745 MET GLU GLU ALA LYS GLN LEU VAL ASP LYS ALA TYR LYS SEQRES 7 A 745 GLU ARG ARG GLU SER ILE LYS GLN ARG LEU ARG SER GLY SEQRES 8 A 745 SER ALA SER PRO MET GLU LEU LEU SER TYR PHE LYS GLN SEQRES 9 A 745 PRO VAL ALA ALA THR ARG THR ALA VAL ARG ALA ALA ASP SEQRES 10 A 745 TYR LEU HIS VAL ALA LEU ASP LEU LEU GLU ARG LYS LEU SEQRES 11 A 745 ARG SER LEU TRP ARG ARG PRO PHE ASN VAL THR ASP VAL SEQRES 12 A 745 LEU THR PRO ALA GLN LEU ASN VAL LEU SER LYS SER SER SEQRES 13 A 745 GLY CYS ALA TYR GLN ASP VAL GLY VAL THR CYS PRO GLU SEQRES 14 A 745 GLN ASP LYS TYR ARG THR ILE THR GLY MET CYS ASN ASN SEQRES 15 A 745 ARG ARG SER PRO THR LEU GLY ALA SER ASN ARG ALA PHE SEQRES 16 A 745 VAL ARG TRP LEU PRO ALA GLU TYR GLU ASP GLY PHE SER SEQRES 17 A 745 LEU PRO TYR GLY TRP THR PRO GLY VAL LYS ARG ASN GLY SEQRES 18 A 745 PHE PRO VAL ALA LEU ALA ARG ALA VAL SER ASN GLU ILE SEQRES 19 A 745 VAL ARG PHE PRO THR ASP GLN LEU THR PRO ASP GLN GLU SEQRES 20 A 745 ARG SER LEU MET PHE MET GLN TRP GLY GLN LEU LEU ASP SEQRES 21 A 745 HIS ASP LEU ASP PHE THR PRO GLU PRO ALA ALA ARG ALA SEQRES 22 A 745 SER PHE VAL THR GLY VAL ASN CYS GLU THR SER CYS VAL SEQRES 23 A 745 GLN GLN PRO PRO CYS PHE PRO LEU LYS ILE PRO PRO ASN SEQRES 24 A 745 ASP PRO ARG ILE LYS ASN GLN ALA ASP CYS ILE PRO PHE SEQRES 25 A 745 PHE ARG SER CYS PRO ALA CYS PRO GLY SER ASN ILE THR SEQRES 26 A 745 ILE ARG ASN GLN ILE ASN ALA LEU THR SER PHE VAL ASP SEQRES 27 A 745 ALA SER MET VAL TYR GLY SER GLU GLU PRO LEU ALA ARG SEQRES 28 A 745 ASN LEU ARG ASN MET SER ASN GLN LEU GLY LEU LEU ALA SEQRES 29 A 745 VAL ASN GLN ARG PHE GLN ASP ASN GLY ARG ALA LEU LEU SEQRES 30 A 745 PRO PHE ASP ASN LEU HIS ASP ASP PRO CYS LEU LEU THR SEQRES 31 A 745 ASN ARG SER ALA ARG ILE PRO CYS PHE LEU ALA GLY ASP SEQRES 32 A 745 THR ARG SER SER GLU MET PRO GLU LEU THR SER MET HIS SEQRES 33 A 745 THR LEU LEU LEU ARG GLU HIS ASN ARG LEU ALA THR GLU SEQRES 34 A 745 LEU LYS SER LEU ASN PRO ARG TRP ASP GLY GLU ARG LEU SEQRES 35 A 745 TYR GLN GLU ALA ARG LYS ILE VAL GLY ALA MET VAL GLN SEQRES 36 A 745 ILE ILE THR TYR ARG ASP TYR LEU PRO LEU VAL LEU GLY SEQRES 37 A 745 PRO THR ALA MET ARG LYS TYR LEU PRO THR TYR ARG SER SEQRES 38 A 745 TYR ASN ASP SER VAL ASP PRO ARG ILE ALA ASN VAL PHE SEQRES 39 A 745 THR ASN ALA PHE ARG TYR GLY HIS THR LEU ILE GLN PRO SEQRES 40 A 745 PHE MET PHE ARG LEU ASP ASN ARG TYR GLN PRO MET GLU SEQRES 41 A 745 PRO ASN PRO ARG VAL PRO LEU SER ARG VAL PHE PHE ALA SEQRES 42 A 745 SER TRP ARG VAL VAL LEU GLU GLY GLY ILE ASP PRO ILE SEQRES 43 A 745 LEU ARG GLY LEU MET ALA THR PRO ALA LYS LEU ASN ARG SEQRES 44 A 745 GLN ASN GLN ILE ALA VAL ASP GLU ILE ARG GLU ARG LEU SEQRES 45 A 745 PHE GLU GLN VAL MET ARG ILE GLY LEU ASP LEU PRO ALA SEQRES 46 A 745 LEU ASN MET GLN ARG SER ARG ASP HIS GLY LEU PRO GLY SEQRES 47 A 745 TYR ASN ALA TRP ARG ARG PHE CYS GLY LEU PRO GLN PRO SEQRES 48 A 745 GLU THR VAL GLY GLN LEU GLY THR VAL LEU ARG ASN LEU SEQRES 49 A 745 LYS LEU ALA ARG LYS LEU MET GLU GLN TYR GLY THR PRO SEQRES 50 A 745 ASN ASN ILE ASP ILE TRP MET GLY GLY VAL SER GLU PRO SEQRES 51 A 745 LEU LYS ARG LYS GLY ARG VAL GLY PRO LEU LEU ALA CYS SEQRES 52 A 745 ILE ILE GLY THR GLN PHE ARG LYS LEU ARG ASP GLY ASP SEQRES 53 A 745 ARG PHE TRP TRP GLU ASN GLU GLY VAL PHE SER MET GLN SEQRES 54 A 745 GLN ARG GLN ALA LEU ALA GLN ILE SER LEU PRO ARG ILE SEQRES 55 A 745 ILE CYS ASP ASN THR GLY ILE THR THR VAL SER LYS ASN SEQRES 56 A 745 ASN ILE PHE MET SER ASN SER TYR PRO ARG ASP PHE VAL SEQRES 57 A 745 ASN CYS SER THR LEU PRO ALA LEU ASN LEU ALA SER TRP SEQRES 58 A 745 ARG GLU ALA SER SEQRES 1 B 105 GLY SER THR GLY SER MET LYS LYS THR LEU VAL ALA GLY SEQRES 2 B 105 PHE ALA VAL ALA ALA LEU SER THR GLY ILE PHE ALA VAL SEQRES 3 B 105 SER ASN GLU ALA ASN ALA GLN VAL THR SER GLN ASN GLY SEQRES 4 B 105 ILE ILE LEU HIS ASP ASP SER ARG MET LEU ASP HIS GLU SEQRES 5 B 105 LEU GLN TYR VAL ASP VAL LEU ILE ASN PRO ASN ALA ASN SEQRES 6 B 105 PRO GLN THR LYS GLU ARG LEU LYS ALA TYR PHE GLU SER SEQRES 7 B 105 GLN GLY LEU ASN THR VAL SER GLU ILE VAL GLN LYS ALA SEQRES 8 B 105 LYS GLN ASP GLY LEU ASP THR SER LYS TYR ASP HIS LEU SEQRES 9 B 105 ILE HET CA A 801 1 HET HEM A 802 43 HET CL A 803 1 HET NAG A 804 14 HET NAG A 805 14 HET NAG A 806 14 HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CL CHLORIDE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN HEM HEME HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CA CA 2+ FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 CL CL 1- FORMUL 6 NAG 3(C8 H15 N O6) FORMUL 9 HOH *105(H2 O) HELIX 1 AA1 LEU A 226 VAL A 235 1 10 HELIX 2 AA2 PRO A 238 LEU A 242 5 5 HELIX 3 AA3 LEU A 250 ASP A 264 1 15 HELIX 4 AA4 ALA A 339 GLY A 344 1 6 HELIX 5 AA5 GLU A 346 LEU A 353 1 8 HELIX 6 AA6 ASP A 385 THR A 390 1 6 HELIX 7 AA7 MET A 409 ASN A 434 1 26 HELIX 8 AA8 ASP A 438 ASP A 461 1 24 HELIX 9 AA9 TYR A 462 LEU A 476 1 15 HELIX 10 AB1 ALA A 491 PHE A 498 1 8 HELIX 11 AB2 ARG A 499 ILE A 505 5 7 HELIX 12 AB3 SER A 528 VAL A 530 5 3 HELIX 13 AB4 SER A 534 GLU A 540 1 7 HELIX 14 AB5 ILE A 543 THR A 553 1 11 HELIX 15 AB6 VAL A 565 GLU A 570 1 6 HELIX 16 AB7 PHE A 573 MET A 577 5 5 HELIX 17 AB8 ASP A 582 HIS A 594 1 13 HELIX 18 AB9 GLY A 598 CYS A 606 1 9 HELIX 19 AC1 THR A 613 ARG A 622 1 10 HELIX 20 AC2 ASN A 623 GLY A 635 1 13 HELIX 21 AC3 THR A 636 ILE A 640 5 5 HELIX 22 AC4 ASP A 641 GLU A 649 1 9 HELIX 23 AC5 GLY A 658 GLY A 675 1 18 HELIX 24 AC6 SER A 687 ALA A 695 1 9 HELIX 25 AC7 SER A 698 ASP A 705 1 8 HELIX 26 AC8 SER A 731 LEU A 733 5 3 HELIX 27 AC9 LEU A 738 ARG A 742 5 5 HELIX 28 AD1 LEU B 44 GLN B 49 1 6 HELIX 29 AD2 TYR B 50 ILE B 55 1 6 HELIX 30 AD3 ASN B 60 GLN B 74 1 15 HELIX 31 AD4 THR B 78 ASP B 89 1 12 SHEET 1 AA1 2 ARG A 193 ALA A 194 0 SHEET 2 AA1 2 ILE A 330 ASN A 331 -1 O ASN A 331 N ARG A 193 SHEET 1 AA2 2 PRO A 244 SER A 249 0 SHEET 2 AA2 2 PRO A 554 LYS A 556 -1 O ALA A 555 N ASP A 245 SHEET 1 AA3 2 LEU A 294 LYS A 295 0 SHEET 2 AA3 2 CYS A 309 ILE A 310 -1 O ILE A 310 N LEU A 294 SHEET 1 AA4 2 PHE A 508 PHE A 510 0 SHEET 2 AA4 2 ARG A 524 PRO A 526 -1 O VAL A 525 N MET A 509 SHEET 1 AA5 2 THR A 711 SER A 713 0 SHEET 2 AA5 2 PHE A 727 ASN A 729 -1 O VAL A 728 N VAL A 712 SHEET 1 AA6 2 VAL B 29 GLN B 32 0 SHEET 2 AA6 2 ILE B 35 ASP B 39 -1 O LEU B 37 N THR B 30 SSBOND 1 CYS A 167 CYS A 180 1555 1555 2.11 SSBOND 2 CYS A 281 CYS A 291 1555 1555 2.03 SSBOND 3 CYS A 285 CYS A 309 1555 1555 2.10 SSBOND 4 CYS A 387 CYS A 398 1555 1555 2.09 SSBOND 5 CYS A 606 CYS A 663 1555 1555 2.13 SSBOND 6 CYS A 704 CYS A 730 1555 1555 2.04 LINK SD MET A 409 CBB HEM A 802 1555 1555 1.95 LINK O ASP A 262 CA CA A 801 1555 1555 2.35 LINK OD1 ASP A 262 CA CA A 801 1555 1555 2.26 LINK O THR A 334 CA CA A 801 1555 1555 2.38 LINK OG1 THR A 334 CA CA A 801 1555 1555 2.29 LINK O PHE A 336 CA CA A 801 1555 1555 2.29 LINK OD1 ASP A 338 CA CA A 801 1555 1555 2.47 LINK OG SER A 340 CA CA A 801 1555 1555 2.36 LINK NE2 HIS A 502 FE HEM A 802 1555 1555 2.51 CISPEP 1 PRO A 289 PRO A 290 0 2.19 CISPEP 2 GLU A 520 PRO A 521 0 8.78 CISPEP 3 ASN A 715 ASN A 716 0 2.16 CISPEP 4 TYR A 723 PRO A 724 0 1.86 CRYST1 84.626 90.674 125.661 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011817 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007958 0.00000