HEADER NUCLEAR PROTEIN 17-NOV-17 6BNS TITLE STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN BOUND TITLE 2 TETHERED WITH SRC CO-ACTIVATOR PEPTIDE AND COMPOUND 25A AKA BICYCLIC TITLE 3 HEXAFLUOROISOPROPYL 2 ALCOHOL SULFONAMIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 1 GROUP I MEMBER 2,NUCLEAR COMPND 3 RECEPTOR COACTIVATOR 1 CHIMERA; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ORPHAN NUCLEAR RECEPTOR PAR1,ORPHAN NUCLEAR RECEPTOR PXR, COMPND 6 PREGNANE X RECEPTOR,STEROID AND XENOBIOTIC RECEPTOR,SXR,NCOA-1,CLASS COMPND 7 E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74,PROTEIN HIN-2,RIP160, COMPND 8 RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID RECEPTOR COACTIVATOR 1,SRC- COMPND 9 1; COMPND 10 EC: 2.3.1.48; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PXR LIGAND BINDING DOMAIN WITH A TETHERED SRC CO- COMPND 13 ACTIVATOR PEPTIDE USING A FLEXIBLE GLYCINE SER LINKERS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1I2, PXR, NCOA1, BHLHE74, SRC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS NUCLEAR RECEPTOR, MULTIPLE BINDING MODES, XENOBIOTIC, PROMISCUOUS, KEYWDS 2 LIGAND, NUCLEAR HORMONE RECEPTOR, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.G.DHAR,H.GONG,D.S.WEINSTEIN,Z.LU,J.J.W.DUAN,S.STACHURA,L.HAQUE, AUTHOR 2 A.KARMAKAR,H.HEMAGIRI,D.K.RAUT,A.K.GUPTA,J.A.KHAN,J.S.SACK, AUTHOR 3 D.M.CAMAC,A.A.PUDZIANOWSKI,D.R.WU,M.YARDE,D.R.SHEN,V.BOROWSKI, AUTHOR 4 J.H.XIE,H.SUN,C.D.ARIENZO,M.DABROS,M.A.GALELLA,F.WANG,C.A.WEIGELT, AUTHOR 5 Q.ZHAO,W.FOSTER,J.E.SOMERVILLE,L.M.SALTER-CID,J.C.BARRISH,P.H.CARTER REVDAT 4 13-MAR-24 6BNS 1 REMARK REVDAT 3 03-JAN-18 6BNS 1 JRNL REVDAT 2 27-DEC-17 6BNS 1 JRNL REVDAT 1 20-DEC-17 6BNS 0 JRNL AUTH H.GONG,D.S.WEINSTEIN,Z.LU,J.J.DUAN,S.STACHURA,L.HAQUE, JRNL AUTH 2 A.KARMAKAR,H.HEMAGIRI,D.K.RAUT,A.K.GUPTA,J.KHAN,D.CAMAC, JRNL AUTH 3 J.S.SACK,A.PUDZIANOWSKI,D.R.WU,M.YARDE,D.R.SHEN,V.BOROWSKI, JRNL AUTH 4 J.H.XIE,H.SUN,C.D'ARIENZO,M.DABROS,M.A.GALELLA,F.WANG, JRNL AUTH 5 C.A.WEIGELT,Q.ZHAO,W.FOSTER,J.E.SOMERVILLE,L.M.SALTER-CID, JRNL AUTH 6 J.C.BARRISH,P.H.CARTER,T.G.M.DHAR JRNL TITL IDENTIFICATION OF BICYCLIC HEXAFLUOROISOPROPYL ALCOHOL JRNL TITL 2 SULFONAMIDES AS RETINOIC ACID RECEPTOR-RELATED ORPHAN JRNL TITL 3 RECEPTOR GAMMA (ROR GAMMA /RORC) INVERSE AGONISTS. EMPLOYING JRNL TITL 4 STRUCTURE-BASED DRUG DESIGN TO IMPROVE PREGNANE X RECEPTOR JRNL TITL 5 (PXR) SELECTIVITY. JRNL REF BIOORG. MED. CHEM. LETT. V. 28 85 2018 JRNL REFN ESSN 1464-3405 JRNL PMID 29233651 JRNL DOI 10.1016/J.BMCL.2017.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1339 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2928 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2227 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2781 REMARK 3 BIN R VALUE (WORKING SET) : 0.2203 REMARK 3 BIN FREE R VALUE : 0.2665 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.12400 REMARK 3 B22 (A**2) : -0.17450 REMARK 3 B33 (A**2) : 1.29850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.319 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.389 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.258 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.390 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.261 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4618 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6271 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1573 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 92 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 704 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4618 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 607 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5298 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 45.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 150MM NACL, 10 REMARK 280 -15%(V/V)PEG10K.CRYSTALS WERE CRYOPROTECTED BY SUPPLEMENTING THE REMARK 280 MOTHER LIQUOR WITH 15% (V/V) ETHYLENE GLYCOL AND HARVESTED BY REMARK 280 FLASH-COOLING IN LIQUID NITROGEN, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.95100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.61700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.95100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.61700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 GLN A 136 REMARK 465 PRO A 137 REMARK 465 LEU A 138 REMARK 465 GLY A 139 REMARK 465 VAL A 140 REMARK 465 GLN A 141 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 CYS A 182 REMARK 465 GLU A 183 REMARK 465 LEU A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 LEU A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 190 REMARK 465 PRO A 191 REMARK 465 ASP A 310 REMARK 465 THR A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 PHE A 315 REMARK 465 GLY A 432A REMARK 465 SER A 432B REMARK 465 SER A 432C REMARK 465 GLY A 432D REMARK 465 GLY A 432E REMARK 465 SER A 432F REMARK 465 GLY A 432G REMARK 465 GLY A 432H REMARK 465 SER A 432I REMARK 465 SER A 432J REMARK 465 HIS A 432K REMARK 465 SER A 432L REMARK 465 GLY A 459 REMARK 465 SER A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 ASP A 463 REMARK 465 ILE A 464 REMARK 465 THR A 465 REMARK 465 THR A 466 REMARK 465 LEU A 467 REMARK 465 SER A 468 REMARK 465 VAL A 469 REMARK 465 GLU A 470 REMARK 465 PRO A 471 REMARK 465 ASP A 472 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 GLU B 131 REMARK 465 ARG B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 THR B 135 REMARK 465 GLN B 136 REMARK 465 PRO B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 VAL B 140 REMARK 465 GLN B 141 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 CYS B 182 REMARK 465 GLU B 183 REMARK 465 LEU B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 SER B 187 REMARK 465 LEU B 188 REMARK 465 GLN B 189 REMARK 465 ALA B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 ASP B 310 REMARK 465 THR B 311 REMARK 465 ALA B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 GLY B 432A REMARK 465 SER B 432B REMARK 465 SER B 432C REMARK 465 GLY B 432D REMARK 465 GLY B 432E REMARK 465 SER B 432F REMARK 465 GLY B 432G REMARK 465 GLY B 432H REMARK 465 SER B 432I REMARK 465 SER B 432J REMARK 465 HIS B 432K REMARK 465 SER B 432L REMARK 465 GLY B 459 REMARK 465 SER B 460 REMARK 465 PRO B 461 REMARK 465 SER B 462 REMARK 465 ASP B 463 REMARK 465 ILE B 464 REMARK 465 THR B 465 REMARK 465 THR B 466 REMARK 465 LEU B 467 REMARK 465 SER B 468 REMARK 465 VAL B 469 REMARK 465 GLU B 470 REMARK 465 PRO B 471 REMARK 465 ASP B 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 146 CD OE1 OE2 REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 ARG A 152 NE CZ NH1 NH2 REMARK 470 LYS A 170 CE NZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 SER A 200 OG REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 204 CE NZ REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 LYS A 226 CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 252 CE NZ REMARK 470 GLU A 270 CD OE1 OE2 REMARK 470 ASP A 271 CG OD1 OD2 REMARK 470 ARG A 303 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 GLN A 317 CG CD OE1 NE2 REMARK 470 LEU A 318 CG CD1 CD2 REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 LEU A 320 CG CD1 CD2 REMARK 470 MET A 323 CG SD CE REMARK 470 LEU A 324 CG CD1 CD2 REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 332 CD CE NZ REMARK 470 GLN A 364 CD OE1 NE2 REMARK 470 GLU A 367 CD OE1 OE2 REMARK 470 LYS A 374 CE NZ REMARK 470 GLN A 383 CG CD OE1 NE2 REMARK 470 GLN A 409 CD OE1 NE2 REMARK 470 LEU A 445 CG CD1 CD2 REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 LYS A 450 CE NZ REMARK 470 GLN A 457 CD OE1 NE2 REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 GLU B 146 CD OE1 OE2 REMARK 470 MET B 149 CG SD CE REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 VAL B 202 CG1 CG2 REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 LEU B 209 CG CD1 CD2 REMARK 470 LYS B 210 CD CE NZ REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 SER B 231 OG REMARK 470 LYS B 234 CD CE NZ REMARK 470 LYS B 252 CE NZ REMARK 470 GLU B 295 CD OE1 OE2 REMARK 470 PHE B 315 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 316 CG CD OE1 NE2 REMARK 470 GLN B 317 CG CD OE1 NE2 REMARK 470 LEU B 320 CG CD1 CD2 REMARK 470 LYS B 325 CD CE NZ REMARK 470 LYS B 332 CE NZ REMARK 470 ARG B 360 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 367 CD OE1 OE2 REMARK 470 GLN B 368 CD OE1 NE2 REMARK 470 ARG B 401 CZ NH1 NH2 REMARK 470 ARG B 410 CD NE CZ NH1 NH2 REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 470 ARG B 448 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 450 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 382 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 301 67.24 -100.67 REMARK 500 ASP A 352 28.97 -74.84 REMARK 500 LEU A 357 -65.04 -90.43 REMARK 500 PRO A 382 169.95 -43.08 REMARK 500 PRO A 384 56.56 -106.91 REMARK 500 PHE A 420 -25.32 -147.01 REMARK 500 LEU B 209 65.72 -106.33 REMARK 500 ASP B 230 -163.92 -65.84 REMARK 500 SER B 231 84.85 55.48 REMARK 500 ASP B 266 22.61 -73.47 REMARK 500 ILE B 269 -34.57 -38.11 REMARK 500 GLN B 358 49.74 -86.78 REMARK 500 ARG B 381 66.48 -118.70 REMARK 500 HIS B 418 89.05 -153.89 REMARK 500 PHE B 420 -28.35 -141.29 REMARK 500 ILE B 431 122.49 -38.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XGH B 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XGH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XGH B 501 DBREF 6BNS A 130 432B UNP O75469 NR1I2_HUMAN 130 434 DBREF 6BNS A 432I 472 UNP Q15788 NCOA1_HUMAN 678 710 DBREF 6BNS B 130 432B UNP O75469 NR1I2_HUMAN 130 434 DBREF 6BNS B 432I 472 UNP Q15788 NCOA1_HUMAN 678 710 SEQADV 6BNS HIS A 123 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS A 124 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS A 125 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS A 126 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS A 127 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS A 128 UNP O75469 EXPRESSION TAG SEQADV 6BNS GLY A 129 UNP O75469 EXPRESSION TAG SEQADV 6BNS SER A 432C UNP O75469 LINKER SEQADV 6BNS GLY A 432D UNP O75469 LINKER SEQADV 6BNS GLY A 432E UNP O75469 LINKER SEQADV 6BNS SER A 432F UNP O75469 LINKER SEQADV 6BNS GLY A 432G UNP O75469 LINKER SEQADV 6BNS GLY A 432H UNP O75469 LINKER SEQADV 6BNS HIS B 123 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS B 124 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS B 125 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS B 126 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS B 127 UNP O75469 EXPRESSION TAG SEQADV 6BNS HIS B 128 UNP O75469 EXPRESSION TAG SEQADV 6BNS GLY B 129 UNP O75469 EXPRESSION TAG SEQADV 6BNS SER B 432C UNP O75469 LINKER SEQADV 6BNS GLY B 432D UNP O75469 LINKER SEQADV 6BNS GLY B 432E UNP O75469 LINKER SEQADV 6BNS SER B 432F UNP O75469 LINKER SEQADV 6BNS GLY B 432G UNP O75469 LINKER SEQADV 6BNS GLY B 432H UNP O75469 LINKER SEQRES 1 A 351 HIS HIS HIS HIS HIS HIS GLY SER GLU ARG THR GLY THR SEQRES 2 A 351 GLN PRO LEU GLY VAL GLN GLY LEU THR GLU GLU GLN ARG SEQRES 3 A 351 MET MET ILE ARG GLU LEU MET ASP ALA GLN MET LYS THR SEQRES 4 A 351 PHE ASP THR THR PHE SER HIS PHE LYS ASN PHE ARG LEU SEQRES 5 A 351 PRO GLY VAL LEU SER SER GLY CYS GLU LEU PRO GLU SER SEQRES 6 A 351 LEU GLN ALA PRO SER ARG GLU GLU ALA ALA LYS TRP SER SEQRES 7 A 351 GLN VAL ARG LYS ASP LEU CYS SER LEU LYS VAL SER LEU SEQRES 8 A 351 GLN LEU ARG GLY GLU ASP GLY SER VAL TRP ASN TYR LYS SEQRES 9 A 351 PRO PRO ALA ASP SER GLY GLY LYS GLU ILE PHE SER LEU SEQRES 10 A 351 LEU PRO HIS MET ALA ASP MET SER THR TYR MET PHE LYS SEQRES 11 A 351 GLY ILE ILE SER PHE ALA LYS VAL ILE SER TYR PHE ARG SEQRES 12 A 351 ASP LEU PRO ILE GLU ASP GLN ILE SER LEU LEU LYS GLY SEQRES 13 A 351 ALA ALA PHE GLU LEU CYS GLN LEU ARG PHE ASN THR VAL SEQRES 14 A 351 PHE ASN ALA GLU THR GLY THR TRP GLU CYS GLY ARG LEU SEQRES 15 A 351 SER TYR CYS LEU GLU ASP THR ALA GLY GLY PHE GLN GLN SEQRES 16 A 351 LEU LEU LEU GLU PRO MET LEU LYS PHE HIS TYR MET LEU SEQRES 17 A 351 LYS LYS LEU GLN LEU HIS GLU GLU GLU TYR VAL LEU MET SEQRES 18 A 351 GLN ALA ILE SER LEU PHE SER PRO ASP ARG PRO GLY VAL SEQRES 19 A 351 LEU GLN HIS ARG VAL VAL ASP GLN LEU GLN GLU GLN PHE SEQRES 20 A 351 ALA ILE THR LEU LYS SER TYR ILE GLU CYS ASN ARG PRO SEQRES 21 A 351 GLN PRO ALA HIS ARG PHE LEU PHE LEU LYS ILE MET ALA SEQRES 22 A 351 MET LEU THR GLU LEU ARG SER ILE ASN ALA GLN HIS THR SEQRES 23 A 351 GLN ARG LEU LEU ARG ILE GLN ASP ILE HIS PRO PHE ALA SEQRES 24 A 351 THR PRO LEU MET GLN GLU LEU PHE GLY ILE THR GLY SER SEQRES 25 A 351 SER GLY GLY SER GLY GLY SER SER HIS SER SER LEU THR SEQRES 26 A 351 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 27 A 351 SER PRO SER ASP ILE THR THR LEU SER VAL GLU PRO ASP SEQRES 1 B 351 HIS HIS HIS HIS HIS HIS GLY SER GLU ARG THR GLY THR SEQRES 2 B 351 GLN PRO LEU GLY VAL GLN GLY LEU THR GLU GLU GLN ARG SEQRES 3 B 351 MET MET ILE ARG GLU LEU MET ASP ALA GLN MET LYS THR SEQRES 4 B 351 PHE ASP THR THR PHE SER HIS PHE LYS ASN PHE ARG LEU SEQRES 5 B 351 PRO GLY VAL LEU SER SER GLY CYS GLU LEU PRO GLU SER SEQRES 6 B 351 LEU GLN ALA PRO SER ARG GLU GLU ALA ALA LYS TRP SER SEQRES 7 B 351 GLN VAL ARG LYS ASP LEU CYS SER LEU LYS VAL SER LEU SEQRES 8 B 351 GLN LEU ARG GLY GLU ASP GLY SER VAL TRP ASN TYR LYS SEQRES 9 B 351 PRO PRO ALA ASP SER GLY GLY LYS GLU ILE PHE SER LEU SEQRES 10 B 351 LEU PRO HIS MET ALA ASP MET SER THR TYR MET PHE LYS SEQRES 11 B 351 GLY ILE ILE SER PHE ALA LYS VAL ILE SER TYR PHE ARG SEQRES 12 B 351 ASP LEU PRO ILE GLU ASP GLN ILE SER LEU LEU LYS GLY SEQRES 13 B 351 ALA ALA PHE GLU LEU CYS GLN LEU ARG PHE ASN THR VAL SEQRES 14 B 351 PHE ASN ALA GLU THR GLY THR TRP GLU CYS GLY ARG LEU SEQRES 15 B 351 SER TYR CYS LEU GLU ASP THR ALA GLY GLY PHE GLN GLN SEQRES 16 B 351 LEU LEU LEU GLU PRO MET LEU LYS PHE HIS TYR MET LEU SEQRES 17 B 351 LYS LYS LEU GLN LEU HIS GLU GLU GLU TYR VAL LEU MET SEQRES 18 B 351 GLN ALA ILE SER LEU PHE SER PRO ASP ARG PRO GLY VAL SEQRES 19 B 351 LEU GLN HIS ARG VAL VAL ASP GLN LEU GLN GLU GLN PHE SEQRES 20 B 351 ALA ILE THR LEU LYS SER TYR ILE GLU CYS ASN ARG PRO SEQRES 21 B 351 GLN PRO ALA HIS ARG PHE LEU PHE LEU LYS ILE MET ALA SEQRES 22 B 351 MET LEU THR GLU LEU ARG SER ILE ASN ALA GLN HIS THR SEQRES 23 B 351 GLN ARG LEU LEU ARG ILE GLN ASP ILE HIS PRO PHE ALA SEQRES 24 B 351 THR PRO LEU MET GLN GLU LEU PHE GLY ILE THR GLY SER SEQRES 25 B 351 SER GLY GLY SER GLY GLY SER SER HIS SER SER LEU THR SEQRES 26 B 351 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 27 B 351 SER PRO SER ASP ILE THR THR LEU SER VAL GLU PRO ASP HET XGH A 501 39 HET XGH B 501 38 HETNAM XGH 2-[(2S)-4-[(4-FLUOROPHENYL)SULFONYL]-7-(1,1,1,3,3,3- HETNAM 2 XGH HEXAFLUORO-2-HYDROXYPROPAN-2-YL)-3,4-DIHYDRO-2H-1,4- HETNAM 3 XGH BENZOTHIAZIN-2-YL]-N-(2-HYDROXY-2-METHYLPROPYL) HETNAM 4 XGH ACETAMIDE FORMUL 3 XGH 2(C23 H23 F7 N2 O5 S2) FORMUL 5 HOH *69(H2 O) HELIX 1 AA1 THR A 144 PHE A 162 1 19 HELIX 2 AA2 ARG A 193 SER A 208 1 16 HELIX 3 AA3 GLY A 233 SER A 238 5 6 HELIX 4 AA4 LEU A 239 ILE A 261 1 23 HELIX 5 AA5 ILE A 261 ASP A 266 1 6 HELIX 6 AA6 PRO A 268 THR A 290 1 23 HELIX 7 AA7 GLU A 321 LEU A 333 1 13 HELIX 8 AA8 HIS A 336 PHE A 349 1 14 HELIX 9 AA9 GLN A 358 ARG A 381 1 24 HELIX 10 AB1 PHE A 388 HIS A 418 1 31 HELIX 11 AB2 THR A 422 GLY A 430 1 9 HELIX 12 AB3 LEU A 445 HIS A 449 1 5 HELIX 13 AB4 HIS A 449 GLU A 458 1 10 HELIX 14 AB5 THR B 144 PHE B 162 1 19 HELIX 15 AB6 ALA B 197 SER B 208 1 12 HELIX 16 AB7 GLY B 233 SER B 238 5 6 HELIX 17 AB8 LEU B 239 VAL B 260 1 22 HELIX 18 AB9 ILE B 261 ASP B 266 1 6 HELIX 19 AC1 PRO B 268 VAL B 291 1 24 HELIX 20 AC2 GLN B 317 LEU B 320 5 4 HELIX 21 AC3 GLU B 321 LEU B 333 1 13 HELIX 22 AC4 HIS B 336 PHE B 349 1 14 HELIX 23 AC5 GLN B 358 ARG B 381 1 24 HELIX 24 AC6 GLN B 383 ARG B 387 5 5 HELIX 25 AC7 PHE B 388 HIS B 418 1 31 HELIX 26 AC8 THR B 422 GLY B 430 1 9 HELIX 27 AC9 LEU B 445 HIS B 449 1 5 HELIX 28 AD1 HIS B 449 GLU B 458 1 10 SHEET 1 AA1 5 VAL A 222 TYR A 225 0 SHEET 2 AA1 5 VAL A 211 ARG A 216 -1 N LEU A 215 O TRP A 223 SHEET 3 AA1 5 LEU A 304 LEU A 308 -1 O CYS A 307 N SER A 212 SHEET 4 AA1 5 THR A 298 CYS A 301 -1 N TRP A 299 O TYR A 306 SHEET 5 AA1 5 PHE A 292 ASN A 293 -1 N ASN A 293 O THR A 298 SHEET 1 AA2 5 VAL B 222 TYR B 225 0 SHEET 2 AA2 5 VAL B 211 ARG B 216 -1 N LEU B 213 O TYR B 225 SHEET 3 AA2 5 LEU B 304 LEU B 308 -1 O CYS B 307 N SER B 212 SHEET 4 AA2 5 THR B 298 CYS B 301 -1 N TRP B 299 O TYR B 306 SHEET 5 AA2 5 PHE B 292 ASN B 293 -1 N ASN B 293 O THR B 298 CISPEP 1 GLN A 383 PRO A 384 0 -29.82 CISPEP 2 SER B 231 GLY B 232 0 -1.15 CISPEP 3 GLY B 232 GLY B 233 0 -2.97 SITE 1 AC1 13 LEU A 206 LEU A 209 VAL A 211 ILE A 236 SITE 2 AC1 13 LEU A 239 LEU A 240 MET A 243 SER A 247 SITE 3 AC1 13 HIS A 407 LEU A 411 PHE A 420 MET A 425 SITE 4 AC1 13 HOH A 620 SITE 1 AC2 17 LEU B 206 LEU B 209 LYS B 210 VAL B 211 SITE 2 AC2 17 ILE B 236 LEU B 239 LEU B 240 MET B 243 SITE 3 AC2 17 SER B 247 PHE B 288 TRP B 299 TYR B 306 SITE 4 AC2 17 MET B 323 HIS B 407 PHE B 420 MET B 425 SITE 5 AC2 17 HOH B 606 CRYST1 84.370 89.234 105.902 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009443 0.00000