HEADER HYDROLASE 18-NOV-17 6BO6 TITLE EUBACTERIUM ELIGENS BETA-GLUCURONIDASE BOUND TO UNC4917 GLUCURONIC TITLE 2 ACID CONJUGATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 2 CANDIDATE B-GLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM ELIGENS (STRAIN ATCC 27750 / VPI SOURCE 3 C15-48); SOURCE 4 ORGANISM_TAXID: 515620; SOURCE 5 STRAIN: ATCC 27750 / VPI C15-48; SOURCE 6 GENE: EUBELI_20590; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL HYDROLASE, BETA-GLUCURONIDASE, HORMONE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.PELLOCK,W.G.WALTON,M.R.REDINBO REVDAT 5 13-MAR-24 6BO6 1 REMARK REVDAT 4 11-DEC-19 6BO6 1 REMARK REVDAT 3 20-FEB-19 6BO6 1 REMARK REVDAT 2 06-FEB-19 6BO6 1 JRNL REVDAT 1 25-JUL-18 6BO6 0 JRNL AUTH S.J.PELLOCK,B.C.CREEKMORE,W.G.WALTON,N.MEHTA,K.A.BIERNAT, JRNL AUTH 2 A.P.CESMAT,Y.ARIYARATHNA,Z.D.DUNN,B.LI,J.JIN,L.I.JAMES, JRNL AUTH 3 M.R.REDINBO JRNL TITL GUT MICROBIAL BETA-GLUCURONIDASE INHIBITION VIA CATALYTIC JRNL TITL 2 CYCLE INTERCEPTION. JRNL REF ACS CENT SCI V. 4 868 2018 JRNL REFN ESSN 2374-7943 JRNL PMID 30062115 JRNL DOI 10.1021/ACSCENTSCI.8B00239 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 31149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3699 - 6.7253 1.00 2302 156 0.2935 0.3014 REMARK 3 2 6.7253 - 5.3486 1.00 2185 147 0.2645 0.2885 REMARK 3 3 5.3486 - 4.6756 1.00 2151 145 0.2327 0.2707 REMARK 3 4 4.6756 - 4.2495 1.00 2137 142 0.2215 0.2432 REMARK 3 5 4.2495 - 3.9457 1.00 2108 141 0.2261 0.2422 REMARK 3 6 3.9457 - 3.7135 1.00 2109 142 0.2274 0.3090 REMARK 3 7 3.7135 - 3.5279 1.00 2095 140 0.2576 0.2947 REMARK 3 8 3.5279 - 3.3745 0.99 2097 136 0.2640 0.3213 REMARK 3 9 3.3745 - 3.2448 0.98 2046 139 0.2910 0.3351 REMARK 3 10 3.2448 - 3.1330 0.99 2057 140 0.2806 0.3279 REMARK 3 11 3.1330 - 3.0351 0.97 2040 135 0.2665 0.3151 REMARK 3 12 3.0351 - 2.9484 0.96 2005 129 0.2709 0.3282 REMARK 3 13 2.9484 - 2.8709 0.94 1959 136 0.2942 0.3257 REMARK 3 14 2.8709 - 2.8009 0.92 1899 131 0.3204 0.3822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4128 REMARK 3 ANGLE : 0.744 5596 REMARK 3 CHIRALITY : 0.047 576 REMARK 3 PLANARITY : 0.004 724 REMARK 3 DIHEDRAL : 7.286 2395 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.50 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 400, 0.1 M BIS-TRIS PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.59267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.18533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.59267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.18533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.59267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 89.18533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.59267 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 89.18533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -89.72150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -155.40220 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -89.18533 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -89.72150 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -155.40220 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -89.18533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 TYR A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 GLN A 8 REMARK 465 SER A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 75 REMARK 465 GLU A 76 REMARK 465 TYR A 77 REMARK 465 VAL A 78 REMARK 465 LYS A 79 REMARK 465 SER A 80 REMARK 465 GLN A 81 REMARK 465 ARG A 82 REMARK 465 ILE A 83 REMARK 465 VAL A 84 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 MET A 153 REMARK 465 MET A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 MET A 157 REMARK 465 GLY A 158 REMARK 465 ALA A 159 REMARK 465 GLY A 160 REMARK 465 ALA A 161 REMARK 465 SER A 162 REMARK 465 ASP A 163 REMARK 465 LYS A 164 REMARK 465 THR A 187 REMARK 465 THR A 188 REMARK 465 PRO A 189 REMARK 465 GLU A 190 REMARK 465 THR A 191 REMARK 465 TYR A 192 REMARK 465 ILE A 193 REMARK 465 ASN A 194 REMARK 465 ASP A 195 REMARK 465 ILE A 196 REMARK 465 THR A 197 REMARK 465 VAL A 198 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 ASP A 201 REMARK 465 ILE A 202 REMARK 465 ASP A 203 REMARK 465 PHE A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 GLU A 207 REMARK 465 GLU A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 ALA A 211 REMARK 465 VAL A 212 REMARK 465 LEU A 213 REMARK 465 ASN A 214 REMARK 465 TYR A 215 REMARK 465 ASN A 216 REMARK 465 VAL A 217 REMARK 465 GLU A 218 REMARK 465 ILE A 219 REMARK 465 LYS A 220 REMARK 465 GLY A 221 REMARK 465 LYS A 222 REMARK 465 ASP A 223 REMARK 465 TYR A 224 REMARK 465 ASN A 225 REMARK 465 ASN A 226 REMARK 465 ILE A 227 REMARK 465 THR A 228 REMARK 465 CYS A 229 REMARK 465 LYS A 230 REMARK 465 VAL A 231 REMARK 465 GLU A 232 REMARK 465 LEU A 233 REMARK 465 PHE A 234 REMARK 465 ASP A 235 REMARK 465 GLU A 236 REMARK 465 GLU A 237 REMARK 465 GLY A 238 REMARK 465 THR A 239 REMARK 465 LYS A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLU A 243 REMARK 465 THR A 244 REMARK 465 GLU A 245 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 GLU A 248 REMARK 465 GLY A 249 REMARK 465 THR A 250 REMARK 465 PHE A 251 REMARK 465 GLU A 252 REMARK 465 ILE A 253 REMARK 465 SER A 254 REMARK 465 ASN A 255 REMARK 465 VAL A 256 REMARK 465 ARG A 257 REMARK 465 LYS A 270 REMARK 465 VAL A 271 REMARK 465 THR A 272 REMARK 465 ALA A 273 REMARK 465 GLY A 274 REMARK 465 GLN A 275 REMARK 465 ASP A 276 REMARK 465 VAL A 277 REMARK 465 LYS A 609 REMARK 465 THR A 610 REMARK 465 LYS A 611 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 35 CB CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 SER A 73 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 288 OE1 GLU A 298 2.01 REMARK 500 OH TYR A 93 OE2 GLU A 105 2.06 REMARK 500 OD1 ASP A 448 NH1 ARG A 452 2.11 REMARK 500 OH TYR A 441 OG SER A 473 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 48.15 -85.45 REMARK 500 ALA A 48 148.36 -172.57 REMARK 500 ALA A 89 138.51 -175.26 REMARK 500 LEU A 98 113.67 -163.63 REMARK 500 ASN A 99 9.03 58.53 REMARK 500 PHE A 110 22.80 -142.05 REMARK 500 ASP A 120 -3.66 79.03 REMARK 500 ASP A 123 -109.88 39.46 REMARK 500 ASP A 137 -154.72 -155.42 REMARK 500 ASP A 172 56.02 -99.61 REMARK 500 ASN A 263 63.75 -152.38 REMARK 500 HIS A 343 51.14 -117.97 REMARK 500 ALA A 367 68.43 -100.12 REMARK 500 ASN A 371 101.67 -162.71 REMARK 500 PHE A 380 -70.71 -106.54 REMARK 500 TRP A 484 -95.07 -130.59 REMARK 500 TYR A 533 -7.20 84.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E0V A 701 DBREF 6BO6 A 1 611 UNP C4Z6Z2 C4Z6Z2_EUBE2 1 611 SEQRES 1 A 611 MET LEU TYR PRO VAL LEU THR GLN SER ARG LEU LEU SER SEQRES 2 A 611 ASP LEU SER GLY VAL TRP ASP PHE LYS LEU ASP ASN GLY SEQRES 3 A 611 LYS GLY PHE GLU GLU LYS TRP TYR GLU LYS PRO LEU LYS SEQRES 4 A 611 ASP ALA ASP THR MET PRO VAL PRO ALA SER TYR ASN ASP SEQRES 5 A 611 LEU LYS GLU GLY THR ASP PHE ARG ASP HIS TYR GLY TRP SEQRES 6 A 611 VAL PHE TYR GLN ARG ASN ILE SER VAL PRO GLU TYR VAL SEQRES 7 A 611 LYS SER GLN ARG ILE VAL LEU ARG CYS ALA ALA VAL THR SEQRES 8 A 611 HIS TYR ALA MET ILE TYR LEU ASN GLY LYS LEU ILE CYS SEQRES 9 A 611 GLU HIS LYS GLY GLY PHE LEU PRO PHE GLU VAL GLU LEU SEQRES 10 A 611 ASN ASP ASP LEU GLN ASP GLY ASP ASN LEU LEU THR ILE SEQRES 11 A 611 ALA VAL ASN ASN VAL ILE ASP TYR THR THR LEU PRO VAL SEQRES 12 A 611 GLY GLY LYS ALA ASN MET MET SER GLY MET MET GLY GLY SEQRES 13 A 611 MET GLY ALA GLY ALA SER ASP LYS PRO GLN ASN ASN PRO SEQRES 14 A 611 ASN PHE ASP PHE PHE ASN TYR CYS GLY ILE THR ARG PRO SEQRES 15 A 611 VAL LYS ILE TYR THR THR PRO GLU THR TYR ILE ASN ASP SEQRES 16 A 611 ILE THR VAL THR ALA ASP ILE ASP PHE THR LYS GLU GLU SEQRES 17 A 611 PRO SER ALA VAL LEU ASN TYR ASN VAL GLU ILE LYS GLY SEQRES 18 A 611 LYS ASP TYR ASN ASN ILE THR CYS LYS VAL GLU LEU PHE SEQRES 19 A 611 ASP GLU GLU GLY THR LYS LEU SER GLU THR GLU GLY SER SEQRES 20 A 611 GLU GLY THR PHE GLU ILE SER ASN VAL ARG LEU TRP GLN SEQRES 21 A 611 PRO LEU ASN ALA TYR LEU TYR LYS ILE LYS VAL THR ALA SEQRES 22 A 611 GLY GLN ASP VAL TYR THR LEU PRO TYR GLY VAL ARG SER SEQRES 23 A 611 VAL ARG VAL ASP GLY THR LYS PHE LEU ILE ASN GLU LYS SEQRES 24 A 611 PRO PHE TYR PHE LYS GLY TYR GLY LYS HIS GLU ASP THR SEQRES 25 A 611 PHE PRO ASN GLY ARG GLY ILE ASN LEU PRO MET ASN THR SEQRES 26 A 611 LYS ASP ILE SER ILE MET LYS TRP GLN HIS ALA ASN SER SEQRES 27 A 611 PHE ARG THR SER HIS TYR PRO TYR SER GLU GLU MET MET SEQRES 28 A 611 ARG LEU CYS ASP GLU GLU GLY ILE VAL VAL ILE ASP GLU SEQRES 29 A 611 THR THR ALA VAL GLY VAL ASN LEU GLN PHE GLY GLY GLY SEQRES 30 A 611 ALA ASN PHE GLY GLY GLU ARG ILE GLY THR PHE ASP LYS SEQRES 31 A 611 GLU HIS GLY VAL GLN THR GLN GLU HIS HIS LYS ASP VAL SEQRES 32 A 611 ILE ARG ASP LEU ILE SER ARG ASP LYS ASN HIS ALA CYS SEQRES 33 A 611 VAL VAL MET TRP SER ILE ALA ASN GLU PRO ASP SER ALA SEQRES 34 A 611 ALA GLU GLY ALA TYR ASP TYR PHE LYS PRO LEU TYR ASP SEQRES 35 A 611 LEU ALA ARG GLU LEU ASP PRO GLN LYS ARG PRO CYS THR SEQRES 36 A 611 LEU VAL SER VAL GLN GLY THR THR ALA ASP THR ASP CYS SEQRES 37 A 611 SER SER GLN LEU SER ASP VAL ILE CYS LEU ASN ARG TYR SEQRES 38 A 611 TYR GLY TRP TYR PHE GLY GLY PRO ASP LEU GLU VAL SER SEQRES 39 A 611 GLU ILE GLY LEU ARG LYS GLU LEU SER ASP TRP GLY LYS SEQRES 40 A 611 LEU GLY LYS PRO VAL MET PHE THR GLU TYR GLY ALA ASP SEQRES 41 A 611 THR VAL SER GLY LEU HIS ASP THR THR SER VAL MET TYR SEQRES 42 A 611 THR GLU GLU TYR GLN VAL GLU TYR TYR GLU MET ASN ASN SEQRES 43 A 611 LYS VAL PHE ASP GLU PHE ASP PHE VAL VAL GLY GLU GLN SEQRES 44 A 611 ALA TRP ASN PHE ALA ASP PHE ALA THR SER GLN SER LEU SEQRES 45 A 611 LEU ARG VAL GLN GLY ASN LYS LYS GLY LEU PHE THR ARG SEQRES 46 A 611 ASP ARG LYS PRO LYS MET VAL ALA HIS TYR PHE ARG ASN SEQRES 47 A 611 ARG TRP SER THR ILE PRO GLU PHE GLY TYR LYS THR LYS HET E0V A 701 35 HETNAM E0V 4-(4-BETA-D-GLUCOPYRANURONOSYLPIPERAZIN-1-YL)-2,7- HETNAM 2 E0V BIS(METHYLAMINO)PYRIDO[3',2':4,5]THIENO[3,2- HETNAM 3 E0V D]PYRIMIDINE FORMUL 2 E0V C21 H27 N7 O6 S FORMUL 3 HOH *19(H2 O) HELIX 1 AA1 GLY A 56 ASP A 61 1 6 HELIX 2 AA2 ASN A 320 GLN A 334 1 15 HELIX 3 AA3 SER A 347 GLY A 358 1 12 HELIX 4 AA4 THR A 396 ASP A 411 1 16 HELIX 5 AA5 GLY A 432 ASP A 448 1 17 HELIX 6 AA6 CYS A 468 SER A 473 1 6 HELIX 7 AA7 ASP A 490 GLY A 506 1 17 HELIX 8 AA8 LYS A 507 GLY A 509 5 3 HELIX 9 AA9 THR A 534 ASP A 550 1 17 HELIX 10 AB1 LYS A 590 THR A 602 1 13 SHEET 1 AA1 6 ASP A 42 VAL A 46 0 SHEET 2 AA1 6 GLY A 17 LEU A 23 -1 N PHE A 21 O ASP A 42 SHEET 3 AA1 6 TRP A 65 ILE A 72 -1 O PHE A 67 N LYS A 22 SHEET 4 AA1 6 ASN A 126 ASN A 133 -1 O ILE A 130 N TYR A 68 SHEET 5 AA1 6 TYR A 93 LEU A 98 -1 N TYR A 97 O THR A 129 SHEET 6 AA1 6 LYS A 101 LYS A 107 -1 O HIS A 106 N ALA A 94 SHEET 1 AA2 3 PHE A 113 GLU A 114 0 SHEET 2 AA2 3 ARG A 86 CYS A 87 -1 N CYS A 87 O PHE A 113 SHEET 3 AA2 3 VAL A 183 LYS A 184 -1 O LYS A 184 N ARG A 86 SHEET 1 AA3 2 GLY A 144 GLY A 145 0 SHEET 2 AA3 2 ASN A 168 PRO A 169 -1 O ASN A 168 N GLY A 145 SHEET 1 AA4 2 TYR A 267 ILE A 269 0 SHEET 2 AA4 2 LEU A 280 TYR A 282 -1 O TYR A 282 N TYR A 267 SHEET 1 AA5 3 VAL A 287 ASP A 290 0 SHEET 2 AA5 3 LYS A 293 ILE A 296 -1 O LYS A 293 N ASP A 290 SHEET 3 AA5 3 LYS A 299 PRO A 300 -1 O LYS A 299 N ILE A 296 SHEET 1 AA6 9 PHE A 303 GLY A 307 0 SHEET 2 AA6 9 SER A 338 ARG A 340 1 O SER A 338 N LYS A 304 SHEET 3 AA6 9 VAL A 360 GLU A 364 1 O VAL A 360 N PHE A 339 SHEET 4 AA6 9 VAL A 417 ASN A 424 1 O VAL A 418 N VAL A 361 SHEET 5 AA6 9 CYS A 454 SER A 458 1 O THR A 455 N ILE A 422 SHEET 6 AA6 9 ILE A 476 ASN A 479 1 O CYS A 477 N SER A 458 SHEET 7 AA6 9 VAL A 512 GLU A 516 1 O THR A 515 N LEU A 478 SHEET 8 AA6 9 VAL A 555 ALA A 560 1 O VAL A 556 N VAL A 512 SHEET 9 AA6 9 PHE A 303 GLY A 307 1 N PHE A 303 O GLU A 558 SHEET 1 AA7 2 TYR A 482 TRP A 484 0 SHEET 2 AA7 2 PHE A 486 GLY A 487 1 O PHE A 486 N GLY A 483 CISPEP 1 ASN A 25 GLY A 26 0 -0.24 CISPEP 2 VAL A 46 PRO A 47 0 -1.15 CISPEP 3 THR A 91 HIS A 92 0 1.98 CISPEP 4 LEU A 141 PRO A 142 0 5.99 CISPEP 5 PHE A 313 PRO A 314 0 -2.43 CISPEP 6 SER A 342 HIS A 343 0 -6.23 CISPEP 7 PHE A 374 GLY A 375 0 -0.64 CISPEP 8 GLY A 375 GLY A 376 0 1.22 CISPEP 9 GLY A 488 PRO A 489 0 8.77 CISPEP 10 TRP A 561 ASN A 562 0 -6.40 SITE 1 AC1 16 MET A 149 ASP A 172 HIS A 343 PHE A 374 SITE 2 AC1 16 ASN A 424 GLU A 425 TYR A 481 TYR A 485 SITE 3 AC1 16 PHE A 486 GLU A 516 TRP A 561 PHE A 566 SITE 4 AC1 16 ARG A 574 ASN A 578 LYS A 580 HOH A 808 CRYST1 179.443 179.443 133.778 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005573 0.003217 0.000000 0.00000 SCALE2 0.000000 0.006435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007475 0.00000