HEADER TRANSFERASE 21-NOV-17 6BOX TITLE STRUCTURE OF THE S. POMBE CLR4 CATALYTIC DOMAIN BOUND TO SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CRYPTIC LOCI REGULATOR 4,HISTONE H3-K9 METHYLTRANSFERASE,H3- COMPND 5 K9-HMTASE,LYSINE N-METHYLTRANSFERASE 1; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: CLR4, KMT1, SPBC428.08C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, SET DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.CURRIE,D.MOAZED REVDAT 7 04-OCT-23 6BOX 1 LINK REVDAT 6 20-NOV-19 6BOX 1 REMARK REVDAT 5 20-FEB-19 6BOX 1 REMARK REVDAT 4 05-SEP-18 6BOX 1 JRNL REVDAT 3 22-AUG-18 6BOX 1 JRNL REVDAT 2 15-AUG-18 6BOX 1 JRNL REVDAT 1 25-JUL-18 6BOX 0 JRNL AUTH N.IGLESIAS,M.A.CURRIE,G.JIH,J.A.PAULO,N.SIUTI,M.KALOCSAY, JRNL AUTH 2 S.P.GYGI,D.MOAZED JRNL TITL AUTOMETHYLATION-INDUCED CONFORMATIONAL SWITCH IN CLR4 JRNL TITL 2 (SUV39H) MAINTAINS EPIGENETIC STABILITY. JRNL REF NATURE V. 560 504 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 30051891 JRNL DOI 10.1038/S41586-018-0398-2 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 24906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.2053 - 5.0160 1.00 2762 170 0.1970 0.2515 REMARK 3 2 5.0160 - 3.9817 1.00 2730 139 0.1748 0.2035 REMARK 3 3 3.9817 - 3.4785 1.00 2707 158 0.2043 0.2540 REMARK 3 4 3.4785 - 3.1605 1.00 2724 142 0.2298 0.2692 REMARK 3 5 3.1605 - 2.9340 1.00 2712 140 0.2655 0.3218 REMARK 3 6 2.9340 - 2.7610 1.00 2701 139 0.2682 0.2996 REMARK 3 7 2.7610 - 2.6227 1.00 2713 136 0.3028 0.3608 REMARK 3 8 2.6227 - 2.5086 0.99 2668 131 0.3381 0.3574 REMARK 3 9 2.5086 - 2.4120 0.71 1921 113 0.3955 0.4380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4429 REMARK 3 ANGLE : 0.532 5993 REMARK 3 CHIRALITY : 0.042 633 REMARK 3 PLANARITY : 0.003 791 REMARK 3 DIHEDRAL : 21.454 1609 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000231202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24906 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 54.205 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM CALCIUM ACETATE, 100 MM REMARK 280 IMIDAZOLE, PH 7.5, 15% PEG 8,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.81250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.81250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 188 REMARK 465 PRO A 189 REMARK 465 LEU A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 LYS A 193 REMARK 465 LEU A 194 REMARK 465 ASP A 371 REMARK 465 LYS A 372 REMARK 465 ASN A 373 REMARK 465 TYR A 374 REMARK 465 ASP A 375 REMARK 465 ASP A 376 REMARK 465 ASP A 377 REMARK 465 GLY A 378 REMARK 465 ILE A 379 REMARK 465 ASP A 390 REMARK 465 ALA A 391 REMARK 465 SER A 392 REMARK 465 VAL A 460 REMARK 465 GLN A 461 REMARK 465 SER A 462 REMARK 465 GLN A 463 REMARK 465 LYS A 464 REMARK 465 SER A 465 REMARK 465 GLN A 466 REMARK 465 GLN A 467 REMARK 465 ASN A 468 REMARK 465 ARG A 469 REMARK 465 ILE A 470 REMARK 465 SER A 471 REMARK 465 LYS A 472 REMARK 465 GLY A 490 REMARK 465 GLY B 188 REMARK 465 PRO B 189 REMARK 465 LEU B 190 REMARK 465 GLY B 191 REMARK 465 SER B 192 REMARK 465 LYS B 193 REMARK 465 LEU B 194 REMARK 465 ASP B 195 REMARK 465 LYS B 372 REMARK 465 ASN B 373 REMARK 465 TYR B 374 REMARK 465 ASP B 375 REMARK 465 ASP B 376 REMARK 465 ASP B 377 REMARK 465 GLY B 378 REMARK 465 LYS B 455 REMARK 465 ASP B 456 REMARK 465 PHE B 457 REMARK 465 SER B 458 REMARK 465 PRO B 459 REMARK 465 VAL B 460 REMARK 465 GLN B 461 REMARK 465 SER B 462 REMARK 465 GLN B 463 REMARK 465 LYS B 464 REMARK 465 SER B 465 REMARK 465 GLN B 466 REMARK 465 GLN B 467 REMARK 465 ASN B 468 REMARK 465 ARG B 469 REMARK 465 ILE B 470 REMARK 465 SER B 471 REMARK 465 LYS B 472 REMARK 465 LEU B 473 REMARK 465 PHE B 489 REMARK 465 GLY B 490 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 228 -152.12 -138.90 REMARK 500 CYS A 262 -40.40 -148.06 REMARK 500 SER A 263 -97.89 43.95 REMARK 500 SER A 264 -157.09 57.74 REMARK 500 ASN A 272 62.74 -118.34 REMARK 500 ARG A 275 -36.73 80.04 REMARK 500 THR A 355 -179.31 -171.02 REMARK 500 ALA A 454 -70.81 -103.74 REMARK 500 ARG A 474 -153.75 -125.59 REMARK 500 ASP B 228 -151.84 -138.58 REMARK 500 ASN B 272 61.55 -119.74 REMARK 500 ASP B 283 -161.88 -78.17 REMARK 500 PRO B 285 75.05 -69.79 REMARK 500 THR B 355 -179.84 -170.63 REMARK 500 THR B 380 -109.79 -148.24 REMARK 500 TYR B 381 22.78 81.18 REMARK 500 LEU B 385 62.26 -102.76 REMARK 500 PHE B 388 -77.60 -104.98 REMARK 500 ARG B 428 52.91 -91.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 260 SG REMARK 620 2 CYS A 278 SG 115.5 REMARK 620 3 CYS A 307 SG 115.2 108.6 REMARK 620 4 CYS A 311 SG 102.0 98.5 115.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 260 SG REMARK 620 2 CYS A 262 SG 99.7 REMARK 620 3 CYS A 268 SG 111.7 97.2 REMARK 620 4 CYS A 276 SG 112.6 110.4 121.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 268 SG REMARK 620 2 CYS A 307 SG 104.7 REMARK 620 3 CYS A 313 SG 112.0 115.3 REMARK 620 4 CYS A 317 SG 95.1 123.6 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 412 SG REMARK 620 2 CYS A 477 SG 116.8 REMARK 620 3 CYS A 479 SG 107.9 109.1 REMARK 620 4 CYS A 484 SG 104.1 120.7 95.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 260 SG REMARK 620 2 CYS B 278 SG 119.5 REMARK 620 3 CYS B 307 SG 115.0 108.6 REMARK 620 4 CYS B 311 SG 100.7 96.9 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 260 SG REMARK 620 2 CYS B 262 SG 97.9 REMARK 620 3 CYS B 268 SG 102.5 92.3 REMARK 620 4 CYS B 276 SG 105.1 125.5 128.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 268 SG REMARK 620 2 CYS B 307 SG 107.2 REMARK 620 3 CYS B 313 SG 114.3 111.7 REMARK 620 4 CYS B 317 SG 100.1 122.7 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 412 SG REMARK 620 2 CYS B 477 SG 110.4 REMARK 620 3 CYS B 479 SG 114.8 102.0 REMARK 620 4 CYS B 484 SG 106.2 106.8 116.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 505 DBREF 6BOX A 192 490 UNP O60016 CLR4_SCHPO 192 490 DBREF 6BOX B 192 490 UNP O60016 CLR4_SCHPO 192 490 SEQADV 6BOX GLY A 188 UNP O60016 EXPRESSION TAG SEQADV 6BOX PRO A 189 UNP O60016 EXPRESSION TAG SEQADV 6BOX LEU A 190 UNP O60016 EXPRESSION TAG SEQADV 6BOX GLY A 191 UNP O60016 EXPRESSION TAG SEQADV 6BOX GLY B 188 UNP O60016 EXPRESSION TAG SEQADV 6BOX PRO B 189 UNP O60016 EXPRESSION TAG SEQADV 6BOX LEU B 190 UNP O60016 EXPRESSION TAG SEQADV 6BOX GLY B 191 UNP O60016 EXPRESSION TAG SEQRES 1 A 303 GLY PRO LEU GLY SER LYS LEU ASP SER TYR THR HIS LEU SEQRES 2 A 303 SER PHE TYR GLU LYS ARG GLU LEU PHE ARG LYS LYS LEU SEQRES 3 A 303 ARG GLU ILE GLU GLY PRO GLU VAL THR LEU VAL ASN GLU SEQRES 4 A 303 VAL ASP ASP GLU PRO CYS PRO SER LEU ASP PHE GLN PHE SEQRES 5 A 303 ILE SER GLN TYR ARG LEU THR GLN GLY VAL ILE PRO PRO SEQRES 6 A 303 ASP PRO ASN PHE GLN SER GLY CYS ASN CYS SER SER LEU SEQRES 7 A 303 GLY GLY CYS ASP LEU ASN ASN PRO SER ARG CYS GLU CYS SEQRES 8 A 303 LEU ASP ASP LEU ASP GLU PRO THR HIS PHE ALA TYR ASP SEQRES 9 A 303 ALA GLN GLY ARG VAL ARG ALA ASP THR GLY ALA VAL ILE SEQRES 10 A 303 TYR GLU CYS ASN SER PHE CYS SER CYS SER MET GLU CYS SEQRES 11 A 303 PRO ASN ARG VAL VAL GLN ARG GLY ARG THR LEU PRO LEU SEQRES 12 A 303 GLU ILE PHE LYS THR LYS GLU LYS GLY TRP GLY VAL ARG SEQRES 13 A 303 SER LEU ARG PHE ALA PRO ALA GLY THR PHE ILE THR CYS SEQRES 14 A 303 TYR LEU GLY GLU VAL ILE THR SER ALA GLU ALA ALA LYS SEQRES 15 A 303 ARG ASP LYS ASN TYR ASP ASP ASP GLY ILE THR TYR LEU SEQRES 16 A 303 PHE ASP LEU ASP MET PHE ASP ASP ALA SER GLU TYR THR SEQRES 17 A 303 VAL ASP ALA GLN ASN TYR GLY ASP VAL SER ARG PHE PHE SEQRES 18 A 303 ASN HIS SER CYS SER PRO ASN ILE ALA ILE TYR SER ALA SEQRES 19 A 303 VAL ARG ASN HIS GLY PHE ARG THR ILE TYR ASP LEU ALA SEQRES 20 A 303 PHE PHE ALA ILE LYS ASP ILE GLN PRO LEU GLU GLU LEU SEQRES 21 A 303 THR PHE ASP TYR ALA GLY ALA LYS ASP PHE SER PRO VAL SEQRES 22 A 303 GLN SER GLN LYS SER GLN GLN ASN ARG ILE SER LYS LEU SEQRES 23 A 303 ARG ARG GLN CYS LYS CYS GLY SER ALA ASN CYS ARG GLY SEQRES 24 A 303 TRP LEU PHE GLY SEQRES 1 B 303 GLY PRO LEU GLY SER LYS LEU ASP SER TYR THR HIS LEU SEQRES 2 B 303 SER PHE TYR GLU LYS ARG GLU LEU PHE ARG LYS LYS LEU SEQRES 3 B 303 ARG GLU ILE GLU GLY PRO GLU VAL THR LEU VAL ASN GLU SEQRES 4 B 303 VAL ASP ASP GLU PRO CYS PRO SER LEU ASP PHE GLN PHE SEQRES 5 B 303 ILE SER GLN TYR ARG LEU THR GLN GLY VAL ILE PRO PRO SEQRES 6 B 303 ASP PRO ASN PHE GLN SER GLY CYS ASN CYS SER SER LEU SEQRES 7 B 303 GLY GLY CYS ASP LEU ASN ASN PRO SER ARG CYS GLU CYS SEQRES 8 B 303 LEU ASP ASP LEU ASP GLU PRO THR HIS PHE ALA TYR ASP SEQRES 9 B 303 ALA GLN GLY ARG VAL ARG ALA ASP THR GLY ALA VAL ILE SEQRES 10 B 303 TYR GLU CYS ASN SER PHE CYS SER CYS SER MET GLU CYS SEQRES 11 B 303 PRO ASN ARG VAL VAL GLN ARG GLY ARG THR LEU PRO LEU SEQRES 12 B 303 GLU ILE PHE LYS THR LYS GLU LYS GLY TRP GLY VAL ARG SEQRES 13 B 303 SER LEU ARG PHE ALA PRO ALA GLY THR PHE ILE THR CYS SEQRES 14 B 303 TYR LEU GLY GLU VAL ILE THR SER ALA GLU ALA ALA LYS SEQRES 15 B 303 ARG ASP LYS ASN TYR ASP ASP ASP GLY ILE THR TYR LEU SEQRES 16 B 303 PHE ASP LEU ASP MET PHE ASP ASP ALA SER GLU TYR THR SEQRES 17 B 303 VAL ASP ALA GLN ASN TYR GLY ASP VAL SER ARG PHE PHE SEQRES 18 B 303 ASN HIS SER CYS SER PRO ASN ILE ALA ILE TYR SER ALA SEQRES 19 B 303 VAL ARG ASN HIS GLY PHE ARG THR ILE TYR ASP LEU ALA SEQRES 20 B 303 PHE PHE ALA ILE LYS ASP ILE GLN PRO LEU GLU GLU LEU SEQRES 21 B 303 THR PHE ASP TYR ALA GLY ALA LYS ASP PHE SER PRO VAL SEQRES 22 B 303 GLN SER GLN LYS SER GLN GLN ASN ARG ILE SER LYS LEU SEQRES 23 B 303 ARG ARG GLN CYS LYS CYS GLY SER ALA ASN CYS ARG GLY SEQRES 24 B 303 TRP LEU PHE GLY HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET SAH A 505 45 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET SAH B 505 45 HETNAM ZN ZINC ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 ZN 8(ZN 2+) FORMUL 7 SAH 2(C14 H20 N6 O5 S) FORMUL 13 HOH *58(H2 O) HELIX 1 AA1 SER A 201 GLU A 215 1 15 HELIX 2 AA2 ASP A 253 GLN A 257 5 5 HELIX 3 AA3 CYS A 276 ASP A 280 5 5 HELIX 4 AA4 ARG A 320 GLY A 325 1 6 HELIX 5 AA5 THR A 363 ARG A 370 1 8 HELIX 6 AA6 ASP A 403 PHE A 408 5 6 HELIX 7 AA7 SER B 201 GLU B 215 1 15 HELIX 8 AA8 ASP B 253 GLN B 257 5 5 HELIX 9 AA9 ASN B 272 ASP B 280 5 9 HELIX 10 AB1 ARG B 320 GLY B 325 1 6 HELIX 11 AB2 THR B 363 ASP B 371 1 9 HELIX 12 AB3 ASP B 403 PHE B 408 5 6 HELIX 13 AB4 ASP B 450 ALA B 454 5 5 SHEET 1 AA1 3 VAL A 221 VAL A 224 0 SHEET 2 AA1 3 LEU A 330 LYS A 334 1 O ILE A 332 N THR A 222 SHEET 3 AA1 3 TRP A 340 SER A 344 -1 O GLY A 341 N PHE A 333 SHEET 1 AA2 2 GLN A 238 PHE A 239 0 SHEET 2 AA2 2 TYR A 401 GLY A 402 1 O GLY A 402 N GLN A 238 SHEET 1 AA3 4 ARG A 244 LEU A 245 0 SHEET 2 AA3 4 GLU A 360 ILE A 362 1 O VAL A 361 N ARG A 244 SHEET 3 AA3 4 THR A 395 ASP A 397 -1 O ASP A 397 N GLU A 360 SHEET 4 AA3 4 LEU A 382 ASP A 384 -1 N PHE A 383 O VAL A 396 SHEET 1 AA4 4 VAL A 303 TYR A 305 0 SHEET 2 AA4 4 ILE A 416 VAL A 422 1 O VAL A 422 N ILE A 304 SHEET 3 AA4 4 ASP A 432 ALA A 437 -1 O ALA A 434 N TYR A 419 SHEET 4 AA4 4 PHE A 353 TYR A 357 -1 N THR A 355 O PHE A 435 SHEET 1 AA5 2 ASN A 409 HIS A 410 0 SHEET 2 AA5 2 THR A 448 PHE A 449 1 O PHE A 449 N ASN A 409 SHEET 1 AA6 3 VAL B 221 VAL B 224 0 SHEET 2 AA6 3 LEU B 330 LYS B 334 1 O ILE B 332 N THR B 222 SHEET 3 AA6 3 TRP B 340 SER B 344 -1 O GLY B 341 N PHE B 333 SHEET 1 AA7 2 GLN B 238 PHE B 239 0 SHEET 2 AA7 2 TYR B 401 GLY B 402 1 O GLY B 402 N GLN B 238 SHEET 1 AA8 4 ARG B 244 LEU B 245 0 SHEET 2 AA8 4 GLU B 360 ILE B 362 1 O VAL B 361 N ARG B 244 SHEET 3 AA8 4 THR B 395 ASP B 397 -1 O ASP B 397 N GLU B 360 SHEET 4 AA8 4 LEU B 382 ASP B 384 -1 N PHE B 383 O VAL B 396 SHEET 1 AA9 4 VAL B 303 TYR B 305 0 SHEET 2 AA9 4 ILE B 416 VAL B 422 1 O VAL B 422 N ILE B 304 SHEET 3 AA9 4 ASP B 432 ALA B 437 -1 O ALA B 434 N TYR B 419 SHEET 4 AA9 4 PHE B 353 TYR B 357 -1 N THR B 355 O PHE B 435 SHEET 1 AB1 2 ASN B 409 HIS B 410 0 SHEET 2 AB1 2 THR B 448 PHE B 449 1 O PHE B 449 N ASN B 409 LINK SG CYS A 260 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 260 ZN ZN A 504 1555 1555 2.46 LINK SG CYS A 262 ZN ZN A 504 1555 1555 2.58 LINK SG CYS A 268 ZN ZN A 503 1555 1555 2.57 LINK SG CYS A 268 ZN ZN A 504 1555 1555 2.30 LINK SG CYS A 276 ZN ZN A 504 1555 1555 2.32 LINK SG CYS A 278 ZN ZN A 502 1555 1555 2.34 LINK SG CYS A 307 ZN ZN A 502 1555 1555 2.26 LINK SG CYS A 307 ZN ZN A 503 1555 1555 2.34 LINK SG CYS A 311 ZN ZN A 502 1555 1555 2.33 LINK SG CYS A 313 ZN ZN A 503 1555 1555 2.26 LINK SG CYS A 317 ZN ZN A 503 1555 1555 2.43 LINK SG CYS A 412 ZN ZN A 501 1555 1555 2.49 LINK SG CYS A 477 ZN ZN A 501 1555 1555 2.47 LINK SG CYS A 479 ZN ZN A 501 1555 1555 2.26 LINK SG CYS A 484 ZN ZN A 501 1555 1555 2.41 LINK SG CYS B 260 ZN ZN B 503 1555 1555 2.41 LINK SG CYS B 260 ZN ZN B 504 1555 1555 2.58 LINK SG CYS B 262 ZN ZN B 504 1555 1555 2.69 LINK SG CYS B 268 ZN ZN B 502 1555 1555 2.45 LINK SG CYS B 268 ZN ZN B 504 1555 1555 2.23 LINK SG CYS B 276 ZN ZN B 504 1555 1555 2.27 LINK SG CYS B 278 ZN ZN B 503 1555 1555 2.41 LINK SG CYS B 307 ZN ZN B 502 1555 1555 2.35 LINK SG CYS B 307 ZN ZN B 503 1555 1555 2.30 LINK SG CYS B 311 ZN ZN B 503 1555 1555 2.36 LINK SG CYS B 313 ZN ZN B 502 1555 1555 2.30 LINK SG CYS B 317 ZN ZN B 502 1555 1555 2.53 LINK SG CYS B 412 ZN ZN B 501 1555 1555 2.49 LINK SG CYS B 477 ZN ZN B 501 1555 1555 2.24 LINK SG CYS B 479 ZN ZN B 501 1555 1555 2.26 LINK SG CYS B 484 ZN ZN B 501 1555 1555 2.50 SITE 1 AC1 4 CYS A 412 CYS A 477 CYS A 479 CYS A 484 SITE 1 AC2 5 CYS A 260 CYS A 278 CYS A 307 CYS A 311 SITE 2 AC2 5 ZN A 504 SITE 1 AC3 4 CYS A 268 CYS A 307 CYS A 313 CYS A 317 SITE 1 AC4 5 CYS A 260 CYS A 262 CYS A 268 CYS A 276 SITE 2 AC4 5 ZN A 502 SITE 1 AC5 13 LYS A 338 GLY A 339 TRP A 340 TYR A 381 SITE 2 AC5 13 ARG A 406 PHE A 407 ASN A 409 HIS A 410 SITE 3 AC5 13 TYR A 451 GLN A 476 CYS A 477 LYS A 478 SITE 4 AC5 13 PHE A 489 SITE 1 AC6 4 CYS B 412 CYS B 477 CYS B 479 CYS B 484 SITE 1 AC7 4 CYS B 268 CYS B 307 CYS B 313 CYS B 317 SITE 1 AC8 5 CYS B 260 CYS B 278 CYS B 307 CYS B 311 SITE 2 AC8 5 ZN B 504 SITE 1 AC9 5 CYS B 260 CYS B 262 CYS B 268 CYS B 276 SITE 2 AC9 5 ZN B 503 SITE 1 AD1 16 LYS B 338 GLY B 339 TRP B 340 THR B 380 SITE 2 AD1 16 TYR B 381 ARG B 406 PHE B 408 ASN B 409 SITE 3 AD1 16 HIS B 410 TYR B 451 ARG B 475 GLN B 476 SITE 4 AD1 16 CYS B 477 LYS B 478 CYS B 479 HOH B 622 CRYST1 125.625 71.255 87.239 90.00 120.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007960 0.000000 0.004665 0.00000 SCALE2 0.000000 0.014034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013286 0.00000