HEADER HYDROLASE 30-NOV-17 6BRK TITLE THE SAM DOMAIN OF MOUSE SAMHD1 IS CRITICAL FOR ITS ACTIVATION AND TITLE 2 REGULATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE SAMHD1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SAMHD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNTPASE, ALLOSTERIC REGULATION, BINDING SITES, MOUSE, MODELS, KEYWDS 2 MOLECULAR, PROTEIN CONFORMATION, PROTEIN MULTIMERIZATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.BUZOVETSKY,C.TANG,K.M.KNECHT,J.M.ANTONUCCI,L.WU,X.JI,Y.XIONG REVDAT 2 04-OCT-23 6BRK 1 REMARK REVDAT 1 14-FEB-18 6BRK 0 JRNL AUTH O.BUZOVETSKY,C.TANG,K.M.KNECHT,J.M.ANTONUCCI,L.WU,X.JI, JRNL AUTH 2 Y.XIONG JRNL TITL THE SAM DOMAIN OF MOUSE SAMHD1 IS CRITICAL FOR ITS JRNL TITL 2 ACTIVATION AND REGULATION. JRNL REF NAT COMMUN V. 9 411 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29379009 JRNL DOI 10.1038/S41467-017-02783-8 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 7813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3680 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4131 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50000 REMARK 3 B22 (A**2) : -4.56000 REMARK 3 B33 (A**2) : 6.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.754 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.671 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 107.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.838 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4321 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5831 ; 1.514 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 5.339 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;39.409 ;23.470 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;21.233 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.499 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 609 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3233 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1994 ; 2.799 ; 5.312 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2482 ; 4.860 ; 7.954 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2324 ; 3.234 ; 5.725 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 18629 ;12.532 ;50.634 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -31.2523 -61.6469 164.6954 REMARK 3 T TENSOR REMARK 3 T11: 0.5076 T22: 0.5599 REMARK 3 T33: 0.7468 T12: 0.0383 REMARK 3 T13: -0.0900 T23: -0.1928 REMARK 3 L TENSOR REMARK 3 L11: 6.1166 L22: 13.6584 REMARK 3 L33: 4.8634 L12: -1.3529 REMARK 3 L13: 0.4860 L23: -0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.2155 S12: -0.1429 S13: 0.2607 REMARK 3 S21: 0.2688 S22: 0.4853 S23: -0.2291 REMARK 3 S31: -0.6631 S32: 0.5505 S33: -0.2698 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 496 REMARK 3 RESIDUE RANGE : A 701 A 704 REMARK 3 RESIDUE RANGE : A 497 A 624 REMARK 3 ORIGIN FOR THE GROUP (A): -57.9814 -95.1412 166.5086 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.4357 REMARK 3 T33: 0.6762 T12: 0.1891 REMARK 3 T13: 0.2037 T23: 0.2213 REMARK 3 L TENSOR REMARK 3 L11: 4.6464 L22: 4.9491 REMARK 3 L33: 1.2771 L12: 0.9608 REMARK 3 L13: 0.5870 L23: -0.7408 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.1522 S13: 0.6856 REMARK 3 S21: 0.1178 S22: 0.3859 S23: 1.3301 REMARK 3 S31: -0.0698 S32: -0.6098 S33: -0.4225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8255 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AJA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SPG (QIAGEN) BUFFER, PH 7.4, REMARK 280 25% PEG 1500, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.87750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.39800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.94800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.87750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.39800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.94800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.87750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.39800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.94800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.87750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.39800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -85.75500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -205.59200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 GLY A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 PRO A 18 REMARK 465 ARG A 19 REMARK 465 TYR A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 VAL A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 MET A 32 REMARK 465 GLN A 33 REMARK 465 SER A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 GLU A 38 REMARK 465 GLN A 39 REMARK 465 PRO A 40 REMARK 465 ALA A 41 REMARK 465 LYS A 42 REMARK 465 ARG A 43 REMARK 465 PRO A 44 REMARK 465 ARG A 45 REMARK 465 CYS A 46 REMARK 465 ASP A 47 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 ARG A 51 REMARK 465 THR A 52 REMARK 465 PRO A 53 REMARK 465 PRO A 54 REMARK 465 SER A 55 REMARK 465 THR A 56 REMARK 465 PRO A 57 REMARK 465 PRO A 58 REMARK 465 ALA A 59 REMARK 465 THR A 60 REMARK 465 ALA A 61 REMARK 465 ASN A 62 REMARK 465 LEU A 63 REMARK 465 SER A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 ASP A 67 REMARK 465 ASP A 68 REMARK 465 PHE A 69 REMARK 465 GLN A 70 REMARK 465 ASN A 71 REMARK 465 PRO A 308 REMARK 465 ILE A 309 REMARK 465 THR A 310 REMARK 465 PRO A 311 REMARK 465 VAL A 312 REMARK 465 LYS A 313 REMARK 465 ASP A 314 REMARK 465 SER A 315 REMARK 465 LYS A 380 REMARK 465 GLU A 381 REMARK 465 ASP A 382 REMARK 465 LYS A 383 REMARK 465 THR A 384 REMARK 465 GLU A 528 REMARK 465 LYS A 529 REMARK 465 ALA A 530 REMARK 465 PRO A 531 REMARK 465 ASP A 532 REMARK 465 TYR A 549 REMARK 465 GLY A 550 REMARK 465 MET A 551 REMARK 465 GLU A 552 REMARK 465 ASP A 553 REMARK 465 LYS A 554 REMARK 465 ASN A 555 REMARK 465 PRO A 556 REMARK 465 ILE A 557 REMARK 465 ASP A 558 REMARK 465 CYS A 564 REMARK 465 LYS A 565 REMARK 465 SER A 566 REMARK 465 ASN A 567 REMARK 465 SER A 568 REMARK 465 LYS A 569 REMARK 465 GLN A 570 REMARK 465 ALA A 571 REMARK 465 VAL A 572 REMARK 465 ARG A 573 REMARK 465 ILE A 574 REMARK 465 ASN A 575 REMARK 465 LYS A 576 REMARK 465 GLU A 577 REMARK 465 GLN A 578 REMARK 465 VAL A 579 REMARK 465 SER A 580 REMARK 465 GLN A 581 REMARK 465 LEU A 582 REMARK 465 LEU A 583 REMARK 465 PRO A 584 REMARK 465 GLU A 585 REMARK 465 LYS A 586 REMARK 465 PHE A 587 REMARK 465 ALA A 588 REMARK 465 ASP A 625 REMARK 465 GLY A 626 REMARK 465 ASP A 627 REMARK 465 ILE A 628 REMARK 465 ILE A 629 REMARK 465 ALA A 630 REMARK 465 PRO A 631 REMARK 465 LEU A 632 REMARK 465 ILE A 633 REMARK 465 THR A 634 REMARK 465 PRO A 635 REMARK 465 LEU A 636 REMARK 465 LYS A 637 REMARK 465 TRP A 638 REMARK 465 ASN A 639 REMARK 465 ASN A 640 REMARK 465 LYS A 641 REMARK 465 THR A 642 REMARK 465 SER A 643 REMARK 465 SER A 644 REMARK 465 CYS A 645 REMARK 465 LEU A 646 REMARK 465 GLN A 647 REMARK 465 GLU A 648 REMARK 465 VAL A 649 REMARK 465 SER A 650 REMARK 465 LYS A 651 REMARK 465 VAL A 652 REMARK 465 LYS A 653 REMARK 465 THR A 654 REMARK 465 CYS A 655 REMARK 465 LEU A 656 REMARK 465 LYS A 657 REMARK 465 PHE A 658 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 378 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 246 -109.98 58.62 REMARK 500 LYS A 326 45.16 -103.64 REMARK 500 ASN A 335 76.12 -100.84 REMARK 500 GLN A 418 38.24 -95.78 REMARK 500 ASN A 495 59.55 -95.50 REMARK 500 GLU A 508 -172.22 61.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DGT A 702 O1B REMARK 620 2 DGT A 704 O3G 122.2 REMARK 620 3 DGT A 704 O2A 139.5 97.1 REMARK 620 4 DGT A 704 O3A 99.6 103.1 58.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGT A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGT A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BRG RELATED DB: PDB REMARK 900 6BRG CONTAINS THE SAME PROTEIN WITHOUT NUCLEOTIDES BOUND. REMARK 900 RELATED ID: 6BRH RELATED DB: PDB REMARK 900 6BRH CONTAINS THE SAME PROTEIN WITH ONE ALLOSTERIC NUCLEOTIDES REMARK 900 BOUND ONLY. DBREF 6BRK A 1 658 UNP F8WJE0 F8WJE0_MOUSE 1 658 SEQADV 6BRK MET A -13 UNP F8WJE0 INITIATING METHIONINE SEQADV 6BRK GLY A -12 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK SER A -11 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK SER A -10 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK HIS A -9 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK HIS A -8 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK HIS A -7 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK HIS A -6 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK HIS A -5 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK HIS A -4 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK SER A -3 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK SER A -2 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK GLY A -1 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK LEU A 0 UNP F8WJE0 EXPRESSION TAG SEQADV 6BRK ARG A 238 UNP F8WJE0 HIS 238 CONFLICT SEQADV 6BRK ASN A 239 UNP F8WJE0 ASP 239 CONFLICT SEQRES 1 A 672 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 672 LEU MET ASP SER LEU LEU GLY CYS GLY VAL SER ALA ALA SEQRES 3 A 672 ALA ARG GLU PRO VAL PRO ARG TYR LEU THR SER GLN PRO SEQRES 4 A 672 ARG VAL SER GLU VAL ALA MET GLN SER ALA PRO LEU GLU SEQRES 5 A 672 GLN PRO ALA LYS ARG PRO ARG CYS ASP GLY SER PRO ARG SEQRES 6 A 672 THR PRO PRO SER THR PRO PRO ALA THR ALA ASN LEU SER SEQRES 7 A 672 ALA ASP ASP ASP PHE GLN ASN THR ASP LEU ARG THR TRP SEQRES 8 A 672 GLU PRO GLU ASP VAL CYS SER PHE LEU GLU ASN ARG GLY SEQRES 9 A 672 PHE ARG GLU LYS LYS VAL LEU ASP ILE PHE ARG ASP ASN SEQRES 10 A 672 LYS ILE ALA GLY SER PHE LEU PRO PHE LEU ASP GLU ASP SEQRES 11 A 672 ARG LEU GLU ASP LEU GLY VAL SER SER LEU GLU GLU ARG SEQRES 12 A 672 LYS LYS MET ILE GLU CYS ILE GLN GLN LEU SER GLN SER SEQRES 13 A 672 ARG ILE ASP LEU MET LYS VAL PHE ASN ASP PRO ILE HIS SEQRES 14 A 672 GLY HIS ILE GLU PHE HIS PRO LEU LEU ILE ARG ILE ILE SEQRES 15 A 672 ASP THR PRO GLN PHE GLN ARG LEU ARG TYR ILE LYS GLN SEQRES 16 A 672 LEU GLY GLY GLY TYR TYR VAL PHE PRO GLY ALA SER HIS SEQRES 17 A 672 ASN ARG PHE GLU HIS SER LEU GLY VAL GLY TYR LEU ALA SEQRES 18 A 672 GLY CYS LEU VAL ARG ALA LEU ALA GLU LYS GLN PRO GLU SEQRES 19 A 672 LEU GLN ILE SER GLU ARG ASP ILE LEU CYS VAL GLN ILE SEQRES 20 A 672 ALA GLY LEU CYS ARG ASN LEU GLY HIS GLY PRO PHE SER SEQRES 21 A 672 HIS MET PHE ASP GLY ARG PHE ILE PRO ARG ALA ARG PRO SEQRES 22 A 672 GLU LYS LYS TRP LYS HIS GLU GLN GLY SER ILE GLU MET SEQRES 23 A 672 PHE GLU HIS LEU VAL ASN SER ASN GLU LEU LYS LEU VAL SEQRES 24 A 672 MET LYS ASN TYR GLY LEU VAL PRO GLU GLU ASP ILE THR SEQRES 25 A 672 PHE ILE LYS GLU GLN ILE MET GLY PRO PRO ILE THR PRO SEQRES 26 A 672 VAL LYS ASP SER LEU TRP PRO TYR LYS GLY ARG PRO ALA SEQRES 27 A 672 THR LYS SER PHE LEU TYR GLU ILE VAL SER ASN LYS ARG SEQRES 28 A 672 ASN GLY ILE ASP VAL ASP LYS TRP ASP TYR PHE ALA ARG SEQRES 29 A 672 ASP CYS HIS HIS LEU GLY ILE GLN ASN ASN PHE ASP TYR SEQRES 30 A 672 LYS ARG PHE ILE LYS PHE ALA ARG ILE CYS GLU VAL GLU SEQRES 31 A 672 TYR LYS VAL LYS GLU ASP LYS THR TYR ILE ARG LYS VAL SEQRES 32 A 672 LYS HIS ILE CYS SER ARG GLU LYS GLU VAL GLY ASN LEU SEQRES 33 A 672 TYR ASP MET PHE HIS THR ARG ASN CYS LEU HIS ARG ARG SEQRES 34 A 672 ALA TYR GLN HIS LYS ILE SER ASN LEU ILE ASP ILE MET SEQRES 35 A 672 ILE THR ASP ALA PHE LEU LYS ALA ASP PRO TYR VAL GLU SEQRES 36 A 672 ILE THR GLY THR ALA GLY LYS LYS PHE ARG ILE SER THR SEQRES 37 A 672 ALA ILE ASP ASP MET GLU ALA PHE THR LYS LEU THR ASP SEQRES 38 A 672 ASN ILE PHE LEU GLU VAL LEU HIS SER THR ASP PRO GLN SEQRES 39 A 672 LEU SER GLU ALA GLN SER ILE LEU ARG ASN ILE GLU CYS SEQRES 40 A 672 ARG ASN LEU TYR LYS TYR LEU GLY GLU THR GLN PRO LYS SEQRES 41 A 672 ARG GLU LYS ILE ARG LYS GLU GLU TYR GLU ARG LEU PRO SEQRES 42 A 672 GLN GLU VAL ALA LYS ALA LYS PRO GLU LYS ALA PRO ASP SEQRES 43 A 672 VAL GLU LEU LYS ALA GLU ASP PHE ILE VAL ASP VAL ILE SEQRES 44 A 672 ASN VAL ASP TYR GLY MET GLU ASP LYS ASN PRO ILE ASP SEQRES 45 A 672 ARG VAL HIS PHE TYR CYS LYS SER ASN SER LYS GLN ALA SEQRES 46 A 672 VAL ARG ILE ASN LYS GLU GLN VAL SER GLN LEU LEU PRO SEQRES 47 A 672 GLU LYS PHE ALA GLU GLN LEU ILE ARG VAL TYR CYS LYS SEQRES 48 A 672 LYS LYS ASP GLY LYS SER LEU ASP ALA ALA GLY LYS HIS SEQRES 49 A 672 PHE VAL GLN TRP CYS ALA LEU ARG ASP PHE THR LYS PRO SEQRES 50 A 672 GLN ASP GLY ASP ILE ILE ALA PRO LEU ILE THR PRO LEU SEQRES 51 A 672 LYS TRP ASN ASN LYS THR SER SER CYS LEU GLN GLU VAL SEQRES 52 A 672 SER LYS VAL LYS THR CYS LEU LYS PHE HET DGT A 701 31 HET DGT A 702 31 HET MG A 703 1 HET DGT A 704 31 HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 DGT 3(C10 H16 N5 O13 P3) FORMUL 4 MG MG 2+ HELIX 1 AA1 GLU A 78 ASN A 88 1 11 HELIX 2 AA2 GLU A 93 LYS A 104 1 12 HELIX 3 AA3 ALA A 106 LEU A 113 5 8 HELIX 4 AA4 ASP A 114 GLY A 122 1 9 HELIX 5 AA5 GLU A 127 GLN A 138 1 12 HELIX 6 AA6 ARG A 143 MET A 147 5 5 HELIX 7 AA7 HIS A 161 ASP A 169 1 9 HELIX 8 AA8 THR A 170 ARG A 175 1 6 HELIX 9 AA9 LEU A 176 ILE A 179 5 4 HELIX 10 AB1 LEU A 182 VAL A 188 5 7 HELIX 11 AB2 ASN A 195 GLN A 218 1 24 HELIX 12 AB3 PRO A 219 GLN A 222 5 4 HELIX 13 AB4 SER A 224 CYS A 237 1 14 HELIX 14 AB5 ARG A 238 HIS A 242 5 5 HELIX 15 AB6 SER A 246 ARG A 252 1 7 HELIX 16 AB7 ARG A 252 ARG A 258 1 7 HELIX 17 AB8 LYS A 264 GLU A 281 1 18 HELIX 18 AB9 GLU A 281 TYR A 289 1 9 HELIX 19 AC1 VAL A 292 GLY A 306 1 15 HELIX 20 AC2 PRO A 323 ILE A 332 5 10 HELIX 21 AC3 ASP A 341 GLY A 356 1 16 HELIX 22 AC4 TYR A 363 LYS A 368 1 6 HELIX 23 AC5 GLU A 398 ALA A 416 1 19 HELIX 24 AC6 HIS A 419 ASP A 437 1 19 HELIX 25 AC7 THR A 445 GLY A 447 5 3 HELIX 26 AC8 THR A 454 ASP A 457 5 4 HELIX 27 AC9 ASP A 458 THR A 463 1 6 HELIX 28 AD1 LYS A 464 LEU A 465 5 2 HELIX 29 AD2 THR A 466 ASP A 467 5 2 HELIX 30 AD3 ASN A 468 SER A 476 1 9 HELIX 31 AD4 ASP A 478 GLN A 480 5 3 HELIX 32 AD5 LEU A 481 CYS A 493 1 13 HELIX 33 AD6 GLU A 514 GLU A 516 5 3 HELIX 34 AD7 ARG A 517 ALA A 525 1 9 HELIX 35 AD8 LYS A 536 GLU A 538 5 3 HELIX 36 AD9 ASP A 600 ARG A 618 1 19 SHEET 1 AA1 2 LYS A 148 ASP A 152 0 SHEET 2 AA1 2 GLY A 156 PHE A 160 -1 O ILE A 158 N PHE A 150 SHEET 1 AA2 3 ALA A 370 TYR A 377 0 SHEET 2 AA2 3 ARG A 387 SER A 394 -1 O VAL A 389 N VAL A 375 SHEET 3 AA2 3 HIS A 561 PHE A 562 1 O HIS A 561 N SER A 394 SHEET 1 AA3 2 ILE A 442 THR A 443 0 SHEET 2 AA3 2 LYS A 449 PHE A 450 -1 O PHE A 450 N ILE A 442 SHEET 1 AA4 3 LYS A 498 THR A 503 0 SHEET 2 AA4 3 GLN A 590 CYS A 596 -1 O ILE A 592 N THR A 503 SHEET 3 AA4 3 PHE A 540 ASN A 546 -1 N ASP A 543 O ARG A 593 SSBOND 1 CYS A 373 CYS A 393 1555 1555 2.06 LINK O1B DGT A 702 MG MG A 703 1555 1555 1.87 LINK MG MG A 703 O3G DGT A 704 1555 1555 1.89 LINK MG MG A 703 O2A DGT A 704 1555 1555 2.85 LINK MG MG A 703 O3A DGT A 704 1555 1555 2.33 SITE 1 AC1 12 LEU A 182 ARG A 196 ARG A 238 ASN A 239 SITE 2 AC1 12 HIS A 242 HIS A 247 HIS A 265 GLU A 266 SITE 3 AC1 12 ASP A 343 TYR A 347 ASP A 351 TYR A 417 SITE 1 AC2 11 VAL A 149 ASN A 151 HIS A 157 VAL A 188 SITE 2 AC2 11 PHE A 189 ARG A 395 ARG A 415 HIS A 419 SITE 3 AC2 11 LYS A 420 MG A 703 DGT A 704 SITE 1 AC3 3 LYS A 148 DGT A 702 DGT A 704 SITE 1 AC4 14 ARG A 75 LYS A 148 VAL A 149 PHE A 150 SITE 2 AC4 14 ASP A 169 GLN A 174 ARG A 177 TYR A 187 SITE 3 AC4 14 VAL A 188 PHE A 197 ILE A 421 ARG A 494 SITE 4 AC4 14 DGT A 702 MG A 703 CRYST1 85.755 102.796 145.896 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006854 0.00000