HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-DEC-17 6BUV TITLE STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS NADD IN COMPLEX WITH INHIBITOR TITLE 2 [(1~{R},2~{R},5~{S})-5-METHYL-2-PROPAN-2-YL-CYCLOHEXYL] 2-[3-METHYL- TITLE 3 2-(PHENOXYMETHYL)BENZIMIDAZOL-1-YL]ETHANOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE NADD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEAMIDO-NAD(+) DIPHOSPHORYLASE, DEAMIDO-NAD(+) COMPND 5 PYROPHOSPHORYLASE, NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE, COMPND 6 NAMN ADENYLYLTRANSFERASE; COMPND 7 EC: 2.7.7.18; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 GENE: NADD, RV2421C, MTCY428.26; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PRSF-NT KEYWDS ROSSMAN FOLD, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.A.RODIONOVA,R.W.REED,L.SORCI,A.L.OSTERMAN,K.V.KOROTKOV REVDAT 7 01-MAY-24 6BUV 1 COMPND HETNAM FORMUL REVDAT 6 04-OCT-23 6BUV 1 LINK REVDAT 5 18-DEC-19 6BUV 1 REMARK REVDAT 4 29-MAY-19 6BUV 1 JRNL REVDAT 3 24-APR-19 6BUV 1 JRNL REVDAT 2 20-FEB-19 6BUV 1 REMARK REVDAT 1 12-DEC-18 6BUV 0 JRNL AUTH A.L.OSTERMAN,I.RODIONOVA,X.LI,E.SERGIENKO,C.T.MA, JRNL AUTH 2 A.CATANZARO,M.E.PETTIGROVE,R.W.REED,R.GUPTA,K.H.ROHDE, JRNL AUTH 3 K.V.KOROTKOV,L.SORCI JRNL TITL NOVEL ANTIMYCOBACTERIAL COMPOUNDS SUPPRESS NAD BIOGENESIS BY JRNL TITL 2 TARGETING A UNIQUE POCKET OF NAMN ADENYLYLTRANSFERASE. JRNL REF ACS CHEM.BIOL. V. 14 949 2019 JRNL REFN ESSN 1554-8937 JRNL PMID 30969758 JRNL DOI 10.1021/ACSCHEMBIO.9B00124 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13RC2_2975 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 65711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.1221 - 5.7770 0.94 3822 236 0.1891 0.2385 REMARK 3 2 5.7770 - 4.5862 0.94 3917 161 0.1425 0.1708 REMARK 3 3 4.5862 - 4.0067 0.95 3858 191 0.1182 0.1183 REMARK 3 4 4.0067 - 3.6405 0.94 3827 232 0.1311 0.1173 REMARK 3 5 3.6405 - 3.3796 0.94 3834 206 0.1380 0.1705 REMARK 3 6 3.3796 - 3.1804 0.94 3831 209 0.1554 0.1758 REMARK 3 7 3.1804 - 3.0211 0.94 3813 218 0.1710 0.2046 REMARK 3 8 3.0211 - 2.8896 0.93 3835 160 0.1622 0.1803 REMARK 3 9 2.8896 - 2.7784 0.93 3797 212 0.1664 0.1849 REMARK 3 10 2.7784 - 2.6825 0.93 3741 212 0.1699 0.2008 REMARK 3 11 2.6825 - 2.5986 0.92 3796 193 0.1760 0.2029 REMARK 3 12 2.5986 - 2.5244 0.92 3742 222 0.1612 0.1810 REMARK 3 13 2.5244 - 2.4579 0.92 3742 212 0.1662 0.1995 REMARK 3 14 2.4579 - 2.3979 0.92 3762 194 0.1649 0.1933 REMARK 3 15 2.3979 - 2.3434 0.91 3704 187 0.1674 0.1944 REMARK 3 16 2.3434 - 2.2936 0.91 3743 182 0.1745 0.2144 REMARK 3 17 2.2936 - 2.2477 0.91 3680 216 0.1885 0.2251 REMARK 3 18 2.2477 - 2.2053 0.91 3736 184 0.1894 0.2314 REMARK 3 19 2.2053 - 2.1659 0.90 3676 208 0.1981 0.2119 REMARK 3 20 2.1659 - 2.1292 0.91 3664 195 0.2131 0.2528 REMARK 3 21 2.1292 - 2.0948 0.90 3704 188 0.2378 0.2521 REMARK 3 22 2.0948 - 2.0626 0.90 3673 189 0.2528 0.2635 REMARK 3 23 2.0626 - 2.0323 0.90 3675 154 0.2575 0.2928 REMARK 3 24 2.0323 - 2.0036 0.89 3706 178 0.2733 0.2460 REMARK 3 25 2.0036 - 1.9766 0.89 3644 178 0.2689 0.2714 REMARK 3 26 1.9766 - 1.9509 0.89 3619 193 0.2883 0.2883 REMARK 3 27 1.9509 - 1.9265 0.89 3622 203 0.2909 0.2983 REMARK 3 28 1.9265 - 1.9033 0.89 3549 204 0.3230 0.3097 REMARK 3 29 1.9033 - 1.8812 0.88 3610 201 0.3649 0.3720 REMARK 3 30 1.8812 - 1.8600 0.88 3572 205 0.4241 0.4570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6598 19.3122 64.1662 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.1765 REMARK 3 T33: 0.2192 T12: 0.0348 REMARK 3 T13: 0.0235 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.5029 L22: 2.1024 REMARK 3 L33: 2.4444 L12: 0.1174 REMARK 3 L13: -0.2421 L23: 0.8745 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: 0.0216 S13: -0.0465 REMARK 3 S21: -0.0260 S22: 0.0224 S23: -0.1817 REMARK 3 S31: -0.0461 S32: 0.1585 S33: 0.0347 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9429 13.7854 52.2647 REMARK 3 T TENSOR REMARK 3 T11: 0.3362 T22: 0.2590 REMARK 3 T33: 0.2926 T12: 0.0478 REMARK 3 T13: 0.0141 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.6517 L22: 1.8980 REMARK 3 L33: 1.2111 L12: 0.1517 REMARK 3 L13: 0.1147 L23: -0.4532 REMARK 3 S TENSOR REMARK 3 S11: 0.1205 S12: 0.3719 S13: -0.2064 REMARK 3 S21: -0.3178 S22: -0.1108 S23: -0.1490 REMARK 3 S31: -0.1162 S32: 0.0087 S33: -0.0090 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3693 30.0922 65.5305 REMARK 3 T TENSOR REMARK 3 T11: 0.2879 T22: 0.2330 REMARK 3 T33: 0.3472 T12: 0.0269 REMARK 3 T13: 0.0313 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.0034 L22: 1.8946 REMARK 3 L33: 2.4020 L12: 0.0804 REMARK 3 L13: 0.2484 L23: 0.9364 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: -0.0414 S13: 0.0045 REMARK 3 S21: -0.1365 S22: -0.0408 S23: -0.2503 REMARK 3 S31: -0.2598 S32: 0.3175 S33: -0.0367 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2350 47.6783 72.6054 REMARK 3 T TENSOR REMARK 3 T11: 0.4387 T22: 0.2461 REMARK 3 T33: 0.2748 T12: 0.0116 REMARK 3 T13: 0.0035 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.2539 L22: 1.9311 REMARK 3 L33: 1.4635 L12: 1.0025 REMARK 3 L13: 0.8694 L23: 0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.0408 S13: 0.0542 REMARK 3 S21: 0.3496 S22: -0.0118 S23: -0.2165 REMARK 3 S31: -0.3344 S32: 0.0858 S33: 0.0073 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0257 52.1396 70.0990 REMARK 3 T TENSOR REMARK 3 T11: 0.5149 T22: 0.2805 REMARK 3 T33: 0.3063 T12: 0.0641 REMARK 3 T13: 0.0239 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.4164 L22: 1.4113 REMARK 3 L33: 1.2131 L12: 0.5518 REMARK 3 L13: 0.2924 L23: -0.1416 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: 0.1235 S13: 0.2534 REMARK 3 S21: 0.1493 S22: 0.0727 S23: 0.0205 REMARK 3 S31: -0.5665 S32: -0.0481 S33: 0.0368 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2608 54.5963 75.7435 REMARK 3 T TENSOR REMARK 3 T11: 0.5835 T22: 0.2522 REMARK 3 T33: 0.3487 T12: 0.0900 REMARK 3 T13: 0.0413 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.8655 L22: 5.9874 REMARK 3 L33: 1.7336 L12: 0.0109 REMARK 3 L13: -0.8013 L23: -2.2192 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0040 S13: 0.1774 REMARK 3 S21: 0.4213 S22: 0.1720 S23: 0.4688 REMARK 3 S31: -0.6483 S32: -0.1681 S33: -0.0530 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 86 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2601 62.9188 80.0749 REMARK 3 T TENSOR REMARK 3 T11: 0.8213 T22: 0.3444 REMARK 3 T33: 0.3908 T12: 0.0315 REMARK 3 T13: 0.0058 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.9262 L22: 1.6618 REMARK 3 L33: 5.4505 L12: -0.3867 REMARK 3 L13: 1.4749 L23: 0.6248 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.4966 S13: 0.2627 REMARK 3 S21: 0.6418 S22: -0.0994 S23: -0.1313 REMARK 3 S31: -0.1028 S32: -0.1699 S33: 0.1074 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7037 59.9013 66.6921 REMARK 3 T TENSOR REMARK 3 T11: 0.5423 T22: 0.2446 REMARK 3 T33: 0.3230 T12: -0.0480 REMARK 3 T13: -0.0356 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.2925 L22: 1.9039 REMARK 3 L33: 3.0198 L12: -0.6541 REMARK 3 L13: -0.1263 L23: -1.5849 REMARK 3 S TENSOR REMARK 3 S11: -0.1071 S12: 0.1423 S13: 0.1884 REMARK 3 S21: 0.5014 S22: -0.1763 S23: -0.1581 REMARK 3 S31: -0.3202 S32: 0.0650 S33: 0.3037 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3407 63.2569 70.8637 REMARK 3 T TENSOR REMARK 3 T11: 0.7402 T22: 0.3005 REMARK 3 T33: 0.4352 T12: -0.0934 REMARK 3 T13: -0.0963 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.0800 L22: 5.1581 REMARK 3 L33: 3.3937 L12: 1.3324 REMARK 3 L13: 0.2562 L23: 0.9420 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: -0.1153 S13: 0.4764 REMARK 3 S21: 0.6363 S22: -0.3023 S23: -0.0069 REMARK 3 S31: -0.9674 S32: 0.0352 S33: 0.3741 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5857 56.9006 64.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.6057 T22: 0.4698 REMARK 3 T33: 0.6967 T12: -0.0662 REMARK 3 T13: -0.0089 T23: 0.1184 REMARK 3 L TENSOR REMARK 3 L11: 3.2542 L22: 5.3291 REMARK 3 L33: 3.4515 L12: 0.8630 REMARK 3 L13: -1.3913 L23: -0.7166 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: 0.0887 S13: 0.4457 REMARK 3 S21: 0.2325 S22: -0.1045 S23: -1.3533 REMARK 3 S31: -0.7251 S32: 0.9931 S33: 0.0322 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0790 38.7704 59.9547 REMARK 3 T TENSOR REMARK 3 T11: 0.3930 T22: 0.2594 REMARK 3 T33: 0.2711 T12: 0.0592 REMARK 3 T13: 0.0174 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.3422 L22: 1.4766 REMARK 3 L33: 0.8863 L12: 0.4532 REMARK 3 L13: 0.5323 L23: -0.1014 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: 0.2869 S13: 0.1130 REMARK 3 S21: -0.2758 S22: 0.0149 S23: 0.0079 REMARK 3 S31: -0.2163 S32: -0.0409 S33: -0.0012 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 187 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1034 39.7793 65.1446 REMARK 3 T TENSOR REMARK 3 T11: 0.3604 T22: 0.3614 REMARK 3 T33: 0.2867 T12: 0.0928 REMARK 3 T13: 0.0063 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 4.6933 L22: 6.4322 REMARK 3 L33: 6.9809 L12: 0.2319 REMARK 3 L13: 0.1762 L23: -2.4918 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.2749 S13: -0.1246 REMARK 3 S21: -0.1856 S22: 0.1652 S23: 0.4342 REMARK 3 S31: -0.0131 S32: -0.9075 S33: 0.0064 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231603. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : SI(111). ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR: LIQUID REMARK 200 NITROGEN COOLED; SAGITALLY REMARK 200 FOCUSING 2ND CRYSTAL, ROSENBAUM- REMARK 200 ROCK VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 52.102 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.773 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.76 REMARK 200 R MERGE FOR SHELL (I) : 1.14600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: PDB ENTRY 4S1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM/POTASSIUM PHOSPHATE, PH REMARK 280 6.2, 2.5 M SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 81.86500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.26478 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.21667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 81.86500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 47.26478 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.21667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 81.86500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 47.26478 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.21667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 81.86500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 47.26478 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.21667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 81.86500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 47.26478 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.21667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 81.86500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 47.26478 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.21667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 94.52956 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 102.43333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 94.52956 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 102.43333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 94.52956 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 102.43333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 94.52956 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 102.43333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 94.52956 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 102.43333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 94.52956 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 102.43333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 TYR A 137 REMARK 465 GLU A 138 REMARK 465 LEU A 139 REMARK 465 ARG A 140 REMARK 465 ASN A 141 REMARK 465 GLU A 142 REMARK 465 HIS A 143 REMARK 465 ILE A 144 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 MET B 2 REMARK 465 GLY B 3 REMARK 465 TYR B 137 REMARK 465 GLU B 138 REMARK 465 LEU B 139 REMARK 465 ARG B 140 REMARK 465 ASN B 141 REMARK 465 GLU B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 183 -0.19 75.04 REMARK 500 GLN B 43 110.36 -161.07 REMARK 500 TRP B 120 4.21 -151.42 REMARK 500 TYR B 183 -3.21 75.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD1 REMARK 620 2 LEU A 156 O 101.6 REMARK 620 3 THR A 157 OG1 102.5 80.3 REMARK 620 4 HOH A 426 O 99.7 89.9 157.1 REMARK 620 5 SER B 116 O 149.2 109.0 79.5 84.4 REMARK 620 6 TRP B 117 O 147.1 110.4 76.1 88.2 4.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E9A B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 DBREF 6BUV A 0 8 PDB 6BUV 6BUV 0 8 DBREF 6BUV A 9 200 UNP P9WJJ5 NADD_MYCTU 1 192 DBREF 6BUV B 0 8 PDB 6BUV 6BUV 0 8 DBREF 6BUV B 9 200 UNP P9WJJ5 NADD_MYCTU 1 192 SEQADV 6BUV ARG A 196 UNP P9WJJ5 CYS 188 ENGINEERED MUTATION SEQADV 6BUV THR A 200 UNP P9WJJ5 CYS 192 ENGINEERED MUTATION SEQADV 6BUV ARG B 196 UNP P9WJJ5 CYS 188 ENGINEERED MUTATION SEQADV 6BUV THR B 200 UNP P9WJJ5 CYS 192 ENGINEERED MUTATION SEQRES 1 A 201 GLY ALA MET GLY ARG ARG LEU GLY VAL MET GLY GLY THR SEQRES 2 A 201 PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL ALA ALA SER SEQRES 3 A 201 GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU VAL VAL PHE SEQRES 4 A 201 VAL PRO SER GLY GLN PRO TRP GLN LYS GLY ARG GLN VAL SEQRES 5 A 201 SER ALA ALA GLU HIS ARG TYR LEU MET THR VAL ILE ALA SEQRES 6 A 201 THR ALA SER ASN PRO ARG PHE SER VAL SER ARG VAL ASP SEQRES 7 A 201 ILE ASP ARG GLY GLY PRO THR TYR THR LYS ASP THR LEU SEQRES 8 A 201 ALA ASP LEU HIS ALA LEU HIS PRO ASP SER GLU LEU TYR SEQRES 9 A 201 PHE THR THR GLY ALA ASP ALA LEU ALA SER ILE MET SER SEQRES 10 A 201 TRP GLN GLY TRP GLU GLU LEU PHE GLU LEU ALA ARG PHE SEQRES 11 A 201 VAL GLY VAL SER ARG PRO GLY TYR GLU LEU ARG ASN GLU SEQRES 12 A 201 HIS ILE THR SER LEU LEU GLY GLN LEU ALA LYS ASP ALA SEQRES 13 A 201 LEU THR LEU VAL GLU ILE PRO ALA LEU ALA ILE SER SER SEQRES 14 A 201 THR ASP CYS ARG GLN ARG ALA GLU GLN SER ARG PRO LEU SEQRES 15 A 201 TRP TYR LEU MET PRO ASP GLY VAL VAL GLN TYR VAL SER SEQRES 16 A 201 LYS ARG ARG LEU TYR THR SEQRES 1 B 201 GLY ALA MET GLY ARG ARG LEU GLY VAL MET GLY GLY THR SEQRES 2 B 201 PHE ASP PRO ILE HIS TYR GLY HIS LEU VAL ALA ALA SER SEQRES 3 B 201 GLU VAL ALA ASP LEU PHE ASP LEU ASP GLU VAL VAL PHE SEQRES 4 B 201 VAL PRO SER GLY GLN PRO TRP GLN LYS GLY ARG GLN VAL SEQRES 5 B 201 SER ALA ALA GLU HIS ARG TYR LEU MET THR VAL ILE ALA SEQRES 6 B 201 THR ALA SER ASN PRO ARG PHE SER VAL SER ARG VAL ASP SEQRES 7 B 201 ILE ASP ARG GLY GLY PRO THR TYR THR LYS ASP THR LEU SEQRES 8 B 201 ALA ASP LEU HIS ALA LEU HIS PRO ASP SER GLU LEU TYR SEQRES 9 B 201 PHE THR THR GLY ALA ASP ALA LEU ALA SER ILE MET SER SEQRES 10 B 201 TRP GLN GLY TRP GLU GLU LEU PHE GLU LEU ALA ARG PHE SEQRES 11 B 201 VAL GLY VAL SER ARG PRO GLY TYR GLU LEU ARG ASN GLU SEQRES 12 B 201 HIS ILE THR SER LEU LEU GLY GLN LEU ALA LYS ASP ALA SEQRES 13 B 201 LEU THR LEU VAL GLU ILE PRO ALA LEU ALA ILE SER SER SEQRES 14 B 201 THR ASP CYS ARG GLN ARG ALA GLU GLN SER ARG PRO LEU SEQRES 15 B 201 TRP TYR LEU MET PRO ASP GLY VAL VAL GLN TYR VAL SER SEQRES 16 B 201 LYS ARG ARG LEU TYR THR HET NA A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET E9A B 301 67 HET CL B 302 1 HET CL B 303 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM E9A 1-METHYL-3-(2-{[(1R,2R,5S)-5-METHYL-2-(PROPAN-2-YL) HETNAM 2 E9A CYCLOHEXYL]OXY}-2-OXOETHYL)-2-(PHENOXYMETHYL)-1H-1,3- HETNAM 3 E9A BENZIMIDAZOL-3-IUM FORMUL 3 NA NA 1+ FORMUL 4 CL 5(CL 1-) FORMUL 7 E9A C27 H35 N2 O3 1+ FORMUL 10 HOH *296(H2 O) HELIX 1 AA1 HIS A 17 PHE A 31 1 15 HELIX 2 AA2 ALA A 53 ALA A 66 1 14 HELIX 3 AA3 ARG A 75 GLY A 81 1 7 HELIX 4 AA4 TYR A 85 HIS A 97 1 13 HELIX 5 AA5 ALA A 108 GLN A 118 1 11 HELIX 6 AA6 GLY A 119 GLU A 125 1 7 HELIX 7 AA7 SER A 146 LYS A 153 1 8 HELIX 8 AA8 PRO A 162 ILE A 166 5 5 HELIX 9 AA9 SER A 167 GLN A 177 1 11 HELIX 10 AB1 PRO A 186 ARG A 196 1 11 HELIX 11 AB2 HIS B 17 PHE B 31 1 15 HELIX 12 AB3 ALA B 53 ALA B 66 1 14 HELIX 13 AB4 ARG B 75 GLY B 81 1 7 HELIX 14 AB5 TYR B 85 HIS B 97 1 13 HELIX 15 AB6 ALA B 108 GLY B 119 1 12 HELIX 16 AB7 TRP B 120 ALA B 127 1 8 HELIX 17 AB8 ILE B 144 LEU B 151 1 8 HELIX 18 AB9 PRO B 162 ILE B 166 5 5 HELIX 19 AC1 SER B 167 GLN B 177 1 11 HELIX 20 AC2 PRO B 186 ARG B 196 1 11 SHEET 1 AA1 6 PHE A 71 VAL A 73 0 SHEET 2 AA1 6 GLU A 35 PRO A 40 1 N PHE A 38 O SER A 72 SHEET 3 AA1 6 ARG A 5 GLY A 11 1 N GLY A 7 O VAL A 37 SHEET 4 AA1 6 GLU A 101 GLY A 107 1 O THR A 105 N VAL A 8 SHEET 5 AA1 6 ARG A 128 SER A 133 1 O VAL A 130 N PHE A 104 SHEET 6 AA1 6 THR A 157 GLU A 160 1 O VAL A 159 N GLY A 131 SHEET 1 AA2 6 PHE B 71 VAL B 73 0 SHEET 2 AA2 6 GLU B 35 PRO B 40 1 N PHE B 38 O SER B 72 SHEET 3 AA2 6 ARG B 5 GLY B 11 1 N GLY B 7 O GLU B 35 SHEET 4 AA2 6 GLU B 101 GLY B 107 1 O THR B 105 N VAL B 8 SHEET 5 AA2 6 ARG B 128 SER B 133 1 O VAL B 130 N PHE B 104 SHEET 6 AA2 6 LEU B 156 GLU B 160 1 O VAL B 159 N GLY B 131 LINK OD1 ASP A 154 NA NA A 301 1555 1555 2.33 LINK O LEU A 156 NA NA A 301 1555 1555 2.35 LINK OG1 THR A 157 NA NA A 301 1555 1555 2.57 LINK NA NA A 301 O HOH A 426 1555 1555 2.49 LINK NA NA A 301 O SER B 116 17555 1555 2.40 LINK NA NA A 301 O TRP B 117 17555 1555 3.16 CISPEP 1 ASP A 14 PRO A 15 0 1.33 CISPEP 2 ASP B 14 PRO B 15 0 4.17 SITE 1 AC1 7 ARG A 128 ASP A 154 LEU A 156 THR A 157 SITE 2 AC1 7 HOH A 426 SER B 116 TRP B 117 SITE 1 AC2 2 VAL A 73 ARG A 196 SITE 1 AC3 4 HIS A 97 PRO A 98 ASP A 99 SER A 100 SITE 1 AC4 3 TYR A 85 GLY A 119 HOH A 483 SITE 1 AC5 8 LEU A 158 GLU A 160 ALA B 108 ASP B 109 SITE 2 AC5 8 ALA B 112 SER B 113 SER B 116 ILE B 144 SITE 1 AC6 2 VAL B 73 ARG B 196 SITE 1 AC7 6 HIS B 17 HIS B 20 ARG B 134 SER B 167 SITE 2 AC7 6 SER B 168 HOH B 482 CRYST1 163.730 163.730 153.650 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006108 0.003526 0.000000 0.00000 SCALE2 0.000000 0.007052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006508 0.00000