HEADER SIGNALING PROTEIN 13-DEC-17 6BVK TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: GTPASE HRAS; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,J.ABBOTT,S.W.FESIK REVDAT 3 16-OCT-24 6BVK 1 LINK REVDAT 2 01-MAY-19 6BVK 1 JRNL REVDAT 1 24-OCT-18 6BVK 0 JRNL AUTH J.R.ABBOTT,T.R.HODGES,R.N.DANIELS,P.A.PATEL,J.P.KENNEDY, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,M.C.BURNS,J.SAI,T.SOBOLIK,Y.BEESETTY, JRNL AUTH 3 T.LEE,O.W.ROSSANESE,J.PHAN,A.G.WATERSON,S.W.FESIK JRNL TITL DISCOVERY OF AMINOPIPERIDINE INDOLES THAT ACTIVATE THE JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR SOS1 AND MODULATE RAS JRNL TITL 3 SIGNALING. JRNL REF J. MED. CHEM. V. 61 6002 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29856609 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00360 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12RC1_2801: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 141270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 6876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6420 - 5.5812 1.00 4803 207 0.1698 0.1837 REMARK 3 2 5.5812 - 4.4332 1.00 4660 179 0.1384 0.1461 REMARK 3 3 4.4332 - 3.8738 1.00 4600 191 0.1223 0.1468 REMARK 3 4 3.8738 - 3.5200 1.00 4538 224 0.1309 0.1383 REMARK 3 5 3.5200 - 3.2679 1.00 4553 207 0.1424 0.1748 REMARK 3 6 3.2679 - 3.0754 1.00 4479 253 0.1492 0.1597 REMARK 3 7 3.0754 - 2.9215 1.00 4482 253 0.1550 0.1885 REMARK 3 8 2.9215 - 2.7943 1.00 4421 298 0.1567 0.1856 REMARK 3 9 2.7943 - 2.6868 1.00 4477 251 0.1617 0.1834 REMARK 3 10 2.6868 - 2.5941 1.00 4454 223 0.1584 0.1882 REMARK 3 11 2.5941 - 2.5131 1.00 4486 235 0.1491 0.1882 REMARK 3 12 2.5131 - 2.4412 1.00 4499 206 0.1546 0.1824 REMARK 3 13 2.4412 - 2.3770 1.00 4472 245 0.1552 0.1767 REMARK 3 14 2.3770 - 2.3190 1.00 4408 258 0.1548 0.1745 REMARK 3 15 2.3190 - 2.2663 1.00 4462 235 0.1555 0.1745 REMARK 3 16 2.2663 - 2.2181 1.00 4479 204 0.1509 0.1699 REMARK 3 17 2.2181 - 2.1737 1.00 4509 193 0.1514 0.1926 REMARK 3 18 2.1737 - 2.1327 1.00 4409 251 0.1521 0.1817 REMARK 3 19 2.1327 - 2.0946 1.00 4446 255 0.1510 0.1777 REMARK 3 20 2.0946 - 2.0591 1.00 4451 214 0.1595 0.1832 REMARK 3 21 2.0591 - 2.0259 1.00 4439 229 0.1634 0.1898 REMARK 3 22 2.0259 - 1.9948 1.00 4483 208 0.1696 0.1894 REMARK 3 23 1.9948 - 1.9654 1.00 4420 249 0.1799 0.1942 REMARK 3 24 1.9654 - 1.9377 1.00 4412 261 0.1933 0.2272 REMARK 3 25 1.9377 - 1.9116 1.00 4419 264 0.1954 0.2094 REMARK 3 26 1.9116 - 1.8867 1.00 4429 220 0.1984 0.2025 REMARK 3 27 1.8867 - 1.8631 1.00 4443 195 0.2049 0.2336 REMARK 3 28 1.8631 - 1.8407 1.00 4455 236 0.2172 0.2543 REMARK 3 29 1.8407 - 1.8193 1.00 4450 210 0.2294 0.2431 REMARK 3 30 1.8193 - 1.7989 0.99 4356 222 0.2276 0.2663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7103 REMARK 3 ANGLE : 0.843 9647 REMARK 3 CHIRALITY : 0.053 1045 REMARK 3 PLANARITY : 0.005 1300 REMARK 3 DIHEDRAL : 14.636 4384 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6475 50.2618 62.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.1316 REMARK 3 T33: 0.1418 T12: -0.0218 REMARK 3 T13: 0.0168 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.0230 L22: 0.0391 REMARK 3 L33: 0.0543 L12: 0.0227 REMARK 3 L13: 0.0165 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.0080 S13: -0.0292 REMARK 3 S21: -0.0168 S22: -0.0085 S23: 0.0880 REMARK 3 S31: 0.0730 S32: -0.0382 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2853 45.1126 56.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1468 REMARK 3 T33: 0.1132 T12: -0.0516 REMARK 3 T13: 0.0180 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.0262 L22: 0.0075 REMARK 3 L33: 0.0386 L12: 0.0066 REMARK 3 L13: 0.0406 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: -0.0917 S13: -0.0125 REMARK 3 S21: 0.0888 S22: 0.0241 S23: -0.0266 REMARK 3 S31: -0.0720 S32: 0.0828 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1419 46.0680 73.3244 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1777 REMARK 3 T33: 0.1267 T12: -0.0432 REMARK 3 T13: 0.0226 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: -0.0052 REMARK 3 L33: 0.0132 L12: 0.0049 REMARK 3 L13: 0.0178 L23: 0.0036 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.1290 S13: -0.0799 REMARK 3 S21: 0.1855 S22: -0.0640 S23: 0.0528 REMARK 3 S31: 0.1648 S32: -0.0532 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2944 57.2204 74.7271 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1771 REMARK 3 T33: 0.1238 T12: -0.0463 REMARK 3 T13: 0.0180 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.0571 L22: 0.0487 REMARK 3 L33: 0.0139 L12: 0.0557 REMARK 3 L13: 0.0134 L23: 0.0205 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: -0.2684 S13: 0.1382 REMARK 3 S21: 0.1245 S22: -0.0343 S23: 0.0391 REMARK 3 S31: -0.0475 S32: 0.0644 S33: 0.0028 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7408 66.1380 65.7562 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1178 REMARK 3 T33: 0.1865 T12: -0.0280 REMARK 3 T13: 0.0313 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.0341 L22: 0.0565 REMARK 3 L33: 0.0333 L12: 0.0586 REMARK 3 L13: -0.0426 L23: -0.0507 REMARK 3 S TENSOR REMARK 3 S11: 0.0442 S12: -0.0384 S13: 0.1759 REMARK 3 S21: -0.0511 S22: -0.0148 S23: 0.0909 REMARK 3 S31: -0.1584 S32: 0.0480 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6833 54.1071 60.7145 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1678 REMARK 3 T33: 0.1236 T12: -0.0416 REMARK 3 T13: 0.0134 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0114 L22: 0.0061 REMARK 3 L33: 0.0127 L12: -0.0105 REMARK 3 L13: -0.0126 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: -0.0029 S13: 0.0438 REMARK 3 S21: 0.0292 S22: -0.0776 S23: -0.0487 REMARK 3 S31: -0.0488 S32: 0.1079 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 723 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9794 31.1171 78.0127 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1239 REMARK 3 T33: 0.0929 T12: -0.0213 REMARK 3 T13: 0.0016 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.0856 L22: 0.1835 REMARK 3 L33: 0.3205 L12: -0.1129 REMARK 3 L13: -0.1935 L23: 0.0517 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0018 S13: 0.0127 REMARK 3 S21: 0.0202 S22: -0.0042 S23: 0.0324 REMARK 3 S31: 0.0146 S32: 0.0419 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 724 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5541 49.4788 52.5579 REMARK 3 T TENSOR REMARK 3 T11: 0.1702 T22: 0.1517 REMARK 3 T33: 0.1645 T12: -0.0238 REMARK 3 T13: 0.0110 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.0331 L22: 0.0359 REMARK 3 L33: 0.0549 L12: -0.0178 REMARK 3 L13: 0.0178 L23: 0.0561 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: 0.0128 S13: 0.0700 REMARK 3 S21: 0.0541 S22: 0.0554 S23: 0.0997 REMARK 3 S31: -0.2807 S32: -0.0649 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 769 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5102 33.8015 32.8561 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0567 REMARK 3 T33: 0.0531 T12: -0.0231 REMARK 3 T13: 0.0092 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.1516 L22: 0.3344 REMARK 3 L33: 0.5732 L12: 0.0361 REMARK 3 L13: -0.0775 L23: -0.1532 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0190 S13: -0.0041 REMARK 3 S21: -0.0144 S22: 0.0252 S23: -0.0147 REMARK 3 S31: -0.0048 S32: 0.0289 S33: 0.0230 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7450 12.2649 41.6185 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1245 REMARK 3 T33: 0.2071 T12: 0.0209 REMARK 3 T13: -0.0042 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: -0.0005 L22: 0.0477 REMARK 3 L33: 0.0134 L12: -0.0102 REMARK 3 L13: 0.0120 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: 0.0223 S13: 0.1245 REMARK 3 S21: 0.1311 S22: 0.0201 S23: -0.1669 REMARK 3 S31: 0.0382 S32: 0.0012 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2379 12.6037 55.8548 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.1477 REMARK 3 T33: 0.4125 T12: 0.0462 REMARK 3 T13: -0.1204 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: -0.0029 L22: 0.0070 REMARK 3 L33: 0.0016 L12: -0.0035 REMARK 3 L13: -0.0004 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.0344 S13: -0.0675 REMARK 3 S21: 0.0471 S22: 0.0476 S23: 0.0106 REMARK 3 S31: 0.1023 S32: 0.0003 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9781 14.3006 46.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2330 REMARK 3 T33: 0.4064 T12: 0.0522 REMARK 3 T13: -0.0919 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0006 L22: 0.0017 REMARK 3 L33: 0.0030 L12: 0.0027 REMARK 3 L13: -0.0119 L23: 0.0018 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.0734 S13: 0.0170 REMARK 3 S21: 0.0494 S22: -0.1188 S23: -0.0451 REMARK 3 S31: -0.1069 S32: 0.1106 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4671 19.2447 36.0046 REMARK 3 T TENSOR REMARK 3 T11: 0.0969 T22: 0.0830 REMARK 3 T33: 0.1516 T12: -0.0008 REMARK 3 T13: 0.0099 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0138 L22: 0.0495 REMARK 3 L33: 0.0878 L12: 0.0218 REMARK 3 L13: 0.0559 L23: 0.0406 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.0221 S13: -0.0117 REMARK 3 S21: -0.0407 S22: 0.0010 S23: -0.1658 REMARK 3 S31: -0.0485 S32: 0.0175 S33: -0.0008 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4409 8.8774 31.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1078 REMARK 3 T33: 0.1248 T12: 0.0188 REMARK 3 T13: 0.0189 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.1086 REMARK 3 L33: 0.0267 L12: -0.0070 REMARK 3 L13: -0.0319 L23: 0.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 0.0488 S13: -0.0041 REMARK 3 S21: -0.1209 S22: -0.0274 S23: 0.0343 REMARK 3 S31: 0.0196 S32: 0.0312 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0925 -1.8695 36.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1042 REMARK 3 T33: 0.1795 T12: 0.0084 REMARK 3 T13: 0.0089 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.0150 L22: 0.0116 REMARK 3 L33: 0.0197 L12: -0.0035 REMARK 3 L13: 0.0186 L23: -0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: -0.0385 S13: -0.0096 REMARK 3 S21: -0.0539 S22: -0.0254 S23: 0.1873 REMARK 3 S31: 0.1069 S32: 0.0130 S33: -0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3707 1.0636 43.3012 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.1201 REMARK 3 T33: 0.1285 T12: 0.0227 REMARK 3 T13: 0.0051 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0115 REMARK 3 L33: 0.0031 L12: -0.0073 REMARK 3 L13: 0.0077 L23: -0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0852 S13: -0.0094 REMARK 3 S21: 0.0651 S22: -0.0063 S23: -0.0692 REMARK 3 S31: -0.0243 S32: -0.0342 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0059 3.3653 37.0193 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1162 REMARK 3 T33: 0.1865 T12: 0.0345 REMARK 3 T13: 0.0267 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.0122 L22: 0.0110 REMARK 3 L33: 0.0000 L12: -0.0061 REMARK 3 L13: 0.0001 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.0160 S13: 0.0350 REMARK 3 S21: -0.0874 S22: -0.0550 S23: -0.1487 REMARK 3 S31: 0.1230 S32: 0.0374 S33: 0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 33.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 92.21050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.50400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 92.21050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.50400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 92.21050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.50400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 92.21050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.50400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.21050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.50400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.21050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.50400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.21050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.50400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.21050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 92.21050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.50400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2862 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2105 O HOH B 2153 1.84 REMARK 500 O HOH A 421 O HOH B 2640 1.85 REMARK 500 O HOH B 2335 O HOH B 2551 1.86 REMARK 500 O HOH C 489 O HOH C 491 1.86 REMARK 500 O HOH B 2594 O HOH B 2830 1.86 REMARK 500 O HOH A 377 O HOH A 472 1.87 REMARK 500 O HOH C 361 O HOH C 527 1.90 REMARK 500 OE1 GLU B 954 O HOH B 2101 1.91 REMARK 500 O HOH B 2635 O HOH B 2670 1.93 REMARK 500 O HOH B 2212 O HOH C 456 1.94 REMARK 500 O HOH B 2610 O HOH B 2649 1.94 REMARK 500 O HOH B 2131 O HOH B 2579 1.95 REMARK 500 O HOH C 488 O HOH C 518 1.96 REMARK 500 O HOH B 2192 O HOH B 2341 1.96 REMARK 500 O PRO B 621 O HOH B 2102 1.96 REMARK 500 O2 GOL B 2008 O HOH B 2103 1.96 REMARK 500 O HOH B 2271 O HOH B 2677 1.96 REMARK 500 O HOH A 357 O HOH A 477 1.98 REMARK 500 O HOH B 2464 O HOH B 2756 1.98 REMARK 500 O HOH B 2636 O HOH C 501 1.99 REMARK 500 O HOH B 2234 O HOH C 464 2.00 REMARK 500 OE1 GLN B 892 O HOH B 2104 2.01 REMARK 500 O HOH C 393 O HOH C 415 2.01 REMARK 500 OE1 GLN A 129 O HOH A 301 2.01 REMARK 500 NH1 ARG C 68 O HOH C 301 2.04 REMARK 500 O HOH B 2731 O HOH B 2763 2.06 REMARK 500 O HOH B 2801 O HOH B 2826 2.07 REMARK 500 O HOH B 2436 O HOH B 2786 2.08 REMARK 500 O HOH B 2449 O HOH B 2662 2.08 REMARK 500 O HOH B 2168 O HOH B 2548 2.09 REMARK 500 O HOH B 2543 O HOH B 2704 2.09 REMARK 500 O HOH A 437 O HOH A 486 2.09 REMARK 500 O HOH B 2114 O HOH B 2513 2.09 REMARK 500 O HOH A 436 O HOH A 463 2.10 REMARK 500 O HOH B 2175 O HOH B 2616 2.10 REMARK 500 O HOH C 346 O HOH C 408 2.11 REMARK 500 O HOH B 2365 O HOH B 2764 2.11 REMARK 500 O2 FMT C 201 O HOH C 302 2.12 REMARK 500 NH1 ARG B 896 O HOH B 2105 2.12 REMARK 500 O HOH B 2662 O HOH B 2774 2.12 REMARK 500 O HOH B 2501 O HOH B 2627 2.12 REMARK 500 O HOH B 2391 O HOH B 2647 2.15 REMARK 500 O HOH A 439 O HOH A 491 2.15 REMARK 500 OE1 GLU B 680 O HOH B 2106 2.16 REMARK 500 O HOH A 454 O HOH B 2774 2.16 REMARK 500 O HOH B 2580 O HOH B 2649 2.16 REMARK 500 O HOH C 334 O HOH C 504 2.16 REMARK 500 O HOH B 2268 O HOH B 2812 2.16 REMARK 500 O HOH B 2531 O HOH B 2631 2.17 REMARK 500 O HOH B 2649 O HOH B 2767 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 55 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2700 O HOH B 2718 7555 1.90 REMARK 500 O HOH B 2735 O HOH C 515 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -64.09 -99.24 REMARK 500 LYS A 117 35.31 71.80 REMARK 500 ARG A 149 -3.85 81.72 REMARK 500 HIS B 764 -118.37 -124.71 REMARK 500 HIS B 770 62.49 -102.15 REMARK 500 GLN C 25 150.74 -49.39 REMARK 500 ASN C 26 98.99 -43.60 REMARK 500 GLU C 37 114.18 -32.18 REMARK 500 ASP C 38 45.48 70.22 REMARK 500 ASP C 38 45.66 70.22 REMARK 500 ASP C 119 -167.94 -162.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 144.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.1 REMARK 620 3 GNP A 201 O1G 172.1 89.6 REMARK 620 4 GNP A 201 O1B 93.2 176.0 94.2 REMARK 620 5 HOH A 324 O 84.9 88.1 92.1 92.8 REMARK 620 6 HOH A 355 O 89.4 89.4 93.3 89.3 174.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 124 OG1 REMARK 620 2 HOH C 481 O 92.9 REMARK 620 3 HOH C 483 O 133.9 120.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EAV B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 202 DBREF 6BVK A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6BVK B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6BVK C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6BVK GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6BVK ALA A 64 UNP P01112 TYR 64 CONFLICT SEQADV 6BVK GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6BVK GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6BVK CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET EAV B2001 33 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET FMT C 201 3 HET NA C 202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EAV N-{1-[(5-CHLORO-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-6- HETNAM 2 EAV METHYL-L-TRYPTOPHANAMIDE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 EAV C26 H30 CL N5 O FORMUL 7 FMT 6(C H2 O2) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 15 NA NA 1+ FORMUL 16 HOH *1198(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 TYR B 575 GLU B 579 5 5 HELIX 9 AA9 THR B 605 THR B 614 1 10 HELIX 10 AB1 ASP B 620 TYR B 631 1 12 HELIX 11 AB2 ARG B 632 PHE B 634 5 3 HELIX 12 AB3 LYS B 636 GLU B 649 1 14 HELIX 13 AB4 THR B 656 ASN B 665 1 10 HELIX 14 AB5 SER B 671 TYR B 681 1 11 HELIX 15 AB6 TYR B 681 HIS B 700 1 20 HELIX 16 AB7 PHE B 701 ARG B 706 1 6 HELIX 17 AB8 ASP B 707 THR B 720 1 14 HELIX 18 AB9 MET B 726 ILE B 742 1 17 HELIX 19 AC1 HIS B 770 PHE B 774 5 5 HELIX 20 AC2 HIS B 780 ALA B 798 1 19 HELIX 21 AC3 GLN B 800 LYS B 811 5 12 HELIX 22 AC4 ASP B 813 SER B 818 1 6 HELIX 23 AC5 SER B 818 GLU B 841 1 24 HELIX 24 AC6 ASN B 844 LEU B 865 1 22 HELIX 25 AC7 ASN B 867 ASN B 879 1 13 HELIX 26 AC8 SER B 880 ARG B 885 1 6 HELIX 27 AC9 LEU B 886 GLN B 892 1 7 HELIX 28 AD1 PRO B 894 ARG B 920 1 27 HELIX 29 AD2 PHE B 930 GLY B 943 1 14 HELIX 30 AD3 PHE B 958 GLN B 975 1 18 HELIX 31 AD4 GLU B 984 ASN B 993 1 10 HELIX 32 AD5 MET B 1001 GLU B 1017 1 17 HELIX 33 AD6 SER C 17 GLN C 25 1 9 HELIX 34 AD7 TYR C 64 ALA C 66 5 3 HELIX 35 AD8 MET C 67 THR C 74 1 8 HELIX 36 AD9 ASN C 86 ASP C 92 1 7 HELIX 37 AE1 ASP C 92 ASP C 105 1 14 HELIX 38 AE2 GLU C 126 GLY C 138 1 13 HELIX 39 AE3 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O LEU C 79 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.32 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.09 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.08 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.02 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.07 LINK MG MG A 202 O HOH A 324 1555 1555 2.10 LINK MG MG A 202 O HOH A 355 1555 1555 2.10 LINK OG1 THR C 124 NA NA C 202 1555 1555 3.18 LINK NA NA C 202 O HOH C 481 1555 1555 2.78 LINK NA NA C 202 O HOH C 483 1555 1555 2.33 CISPEP 1 PRO B 924 PRO B 925 0 11.46 CISPEP 2 ASN B 1020 PRO B 1021 0 5.79 SITE 1 AC1 30 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 30 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 30 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 30 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 30 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 30 HOH A 324 HOH A 338 HOH A 355 HOH A 375 SITE 8 AC1 30 HOH A 406 HOH A 419 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 324 SITE 2 AC2 5 HOH A 355 SITE 1 AC3 8 MET B 878 ASN B 879 TYR B 884 PHE B 890 SITE 2 AC3 8 LYS B 898 GLU B 902 HOH B2160 HOH B2489 SITE 1 AC4 6 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC4 6 HOH B2148 HOH B2174 SITE 1 AC5 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC6 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC6 7 ARG B 688 HOH B2157 HOH B2244 SITE 1 AC7 5 TYR B 615 HIS B 616 ARG B 647 TYR B 681 SITE 2 AC7 5 HOH B2278 SITE 1 AC8 2 TYR B1031 HOH B2537 SITE 1 AC9 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AC9 5 HOH B2378 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2103 SITE 2 AD1 5 HOH B2292 SITE 1 AD2 8 LEU B 938 GLY C 15 LYS C 16 SER C 17 SITE 2 AD2 8 ALA C 59 HOH C 302 HOH C 401 HOH C 402 SITE 1 AD3 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD3 6 HOH C 481 HOH C 483 CRYST1 184.421 184.421 179.008 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005586 0.00000