HEADER SIGNALING PROTEIN 13-DEC-17 6BVL TITLE RAS:SOS:RAS IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GTPASE HRAS; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SOS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: HRAS, HRAS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, SOS, INHIBITOR, ONCOPROTEIN, PROTEIN-PROTEIN COMPLEX, MAPK, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,J.ABBOTT,S.W.FESIK REVDAT 5 15-NOV-23 6BVL 1 REMARK REVDAT 4 04-OCT-23 6BVL 1 LINK REVDAT 3 29-MAY-19 6BVL 1 REMARK REVDAT 2 01-MAY-19 6BVL 1 JRNL REVDAT 1 24-OCT-18 6BVL 0 JRNL AUTH J.R.ABBOTT,T.R.HODGES,R.N.DANIELS,P.A.PATEL,J.P.KENNEDY, JRNL AUTH 2 J.E.HOWES,D.T.AKAN,M.C.BURNS,J.SAI,T.SOBOLIK,Y.BEESETTY, JRNL AUTH 3 T.LEE,O.W.ROSSANESE,J.PHAN,A.G.WATERSON,S.W.FESIK JRNL TITL DISCOVERY OF AMINOPIPERIDINE INDOLES THAT ACTIVATE THE JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR SOS1 AND MODULATE RAS JRNL TITL 3 SIGNALING. JRNL REF J. MED. CHEM. V. 61 6002 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29856609 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00360 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, REMARK 1 AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK REMARK 1 TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT REMARK 1 TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 111 3401 2014 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 PMID 24550516 REMARK 1 DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12RC1_2801: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 153620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 7731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0938 - 5.4243 1.00 5202 231 0.1657 0.1650 REMARK 3 2 5.4243 - 4.3077 1.00 4974 294 0.1340 0.1361 REMARK 3 3 4.3077 - 3.7639 1.00 4904 293 0.1279 0.1333 REMARK 3 4 3.7639 - 3.4200 1.00 4926 262 0.1365 0.1459 REMARK 3 5 3.4200 - 3.1751 1.00 4929 230 0.1514 0.1604 REMARK 3 6 3.1751 - 2.9880 1.00 4883 247 0.1590 0.1704 REMARK 3 7 2.9880 - 2.8384 1.00 4909 277 0.1575 0.1797 REMARK 3 8 2.8384 - 2.7149 1.00 4862 262 0.1645 0.1753 REMARK 3 9 2.7149 - 2.6104 1.00 4904 243 0.1603 0.1923 REMARK 3 10 2.6104 - 2.5203 1.00 4801 297 0.1548 0.1749 REMARK 3 11 2.5203 - 2.4415 1.00 4867 263 0.1572 0.1743 REMARK 3 12 2.4415 - 2.3718 1.00 4869 246 0.1597 0.1928 REMARK 3 13 2.3718 - 2.3093 1.00 4841 281 0.1595 0.2012 REMARK 3 14 2.3093 - 2.2530 1.00 4810 257 0.1581 0.1796 REMARK 3 15 2.2530 - 2.2018 1.00 4855 270 0.1532 0.1682 REMARK 3 16 2.2018 - 2.1549 1.00 4853 254 0.1482 0.1608 REMARK 3 17 2.1549 - 2.1118 1.00 4823 262 0.1511 0.1587 REMARK 3 18 2.1118 - 2.0720 1.00 4812 255 0.1556 0.1899 REMARK 3 19 2.0720 - 2.0350 1.00 4861 254 0.1629 0.1716 REMARK 3 20 2.0350 - 2.0005 1.00 4835 228 0.1671 0.1928 REMARK 3 21 2.0005 - 1.9682 1.00 4873 246 0.1711 0.1981 REMARK 3 22 1.9682 - 1.9380 1.00 4838 258 0.1816 0.1904 REMARK 3 23 1.9380 - 1.9095 1.00 4782 302 0.1879 0.2090 REMARK 3 24 1.9095 - 1.8826 1.00 4769 288 0.1849 0.2222 REMARK 3 25 1.8826 - 1.8571 1.00 4851 245 0.1909 0.2103 REMARK 3 26 1.8571 - 1.8330 1.00 4847 229 0.1957 0.2003 REMARK 3 27 1.8330 - 1.8101 1.00 4809 232 0.1951 0.2260 REMARK 3 28 1.8101 - 1.7883 1.00 4882 240 0.2056 0.2086 REMARK 3 29 1.7883 - 1.7675 1.00 4815 252 0.2106 0.2464 REMARK 3 30 1.7675 - 1.7476 0.97 4703 233 0.2321 0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7121 REMARK 3 ANGLE : 0.848 9679 REMARK 3 CHIRALITY : 0.053 1048 REMARK 3 PLANARITY : 0.005 1307 REMARK 3 DIHEDRAL : 14.790 4396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5694 50.2629 62.3922 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1404 REMARK 3 T33: 0.1356 T12: -0.0257 REMARK 3 T13: 0.0172 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.0325 L22: 0.0310 REMARK 3 L33: 0.0370 L12: 0.0227 REMARK 3 L13: 0.0120 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: 0.0191 S13: -0.0241 REMARK 3 S21: -0.0123 S22: 0.0098 S23: 0.0831 REMARK 3 S31: 0.1115 S32: -0.0353 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8927 45.3069 56.5228 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.1668 REMARK 3 T33: 0.1287 T12: -0.0512 REMARK 3 T13: 0.0209 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.0194 L22: -0.0001 REMARK 3 L33: 0.0297 L12: 0.0004 REMARK 3 L13: 0.0347 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0791 S13: -0.0136 REMARK 3 S21: 0.0752 S22: 0.0646 S23: -0.0399 REMARK 3 S31: -0.0568 S32: 0.0571 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0663 46.0565 73.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.1954 REMARK 3 T33: 0.1381 T12: -0.0503 REMARK 3 T13: 0.0262 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.0132 L22: -0.0013 REMARK 3 L33: 0.0154 L12: 0.0025 REMARK 3 L13: 0.0185 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.1457 S13: -0.1000 REMARK 3 S21: 0.1831 S22: -0.0655 S23: 0.0615 REMARK 3 S31: 0.1294 S32: -0.0403 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2160 57.1392 74.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.1759 REMARK 3 T33: 0.1234 T12: -0.0457 REMARK 3 T13: 0.0202 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.0238 L22: 0.0417 REMARK 3 L33: 0.0041 L12: 0.0347 REMARK 3 L13: 0.0085 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: -0.2310 S13: 0.1094 REMARK 3 S21: 0.1412 S22: -0.0328 S23: 0.0288 REMARK 3 S31: -0.0643 S32: 0.0472 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6656 66.1228 65.8282 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1249 REMARK 3 T33: 0.1928 T12: -0.0284 REMARK 3 T13: 0.0282 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.0281 L22: 0.0497 REMARK 3 L33: 0.0298 L12: 0.0610 REMARK 3 L13: -0.0378 L23: -0.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: -0.0099 S13: 0.1897 REMARK 3 S21: -0.0254 S22: -0.0126 S23: 0.1113 REMARK 3 S31: -0.1473 S32: 0.0636 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6082 54.1267 60.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1773 REMARK 3 T33: 0.1279 T12: -0.0470 REMARK 3 T13: 0.0159 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.0094 L22: 0.0031 REMARK 3 L33: 0.0078 L12: -0.0090 REMARK 3 L13: -0.0091 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0063 S13: 0.0480 REMARK 3 S21: 0.0009 S22: -0.0550 S23: -0.0336 REMARK 3 S31: -0.0486 S32: 0.1394 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 565 THROUGH 699 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2986 30.7214 80.2379 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1375 REMARK 3 T33: 0.1069 T12: -0.0179 REMARK 3 T13: 0.0023 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.0533 L22: 0.1097 REMARK 3 L33: 0.1310 L12: -0.1242 REMARK 3 L13: -0.1238 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0103 S13: 0.0198 REMARK 3 S21: 0.0082 S22: 0.0265 S23: -0.0131 REMARK 3 S31: -0.0021 S32: 0.0757 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 700 THROUGH 780 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1409 43.6743 52.2306 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1803 REMARK 3 T33: 0.1619 T12: -0.0170 REMARK 3 T13: 0.0032 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0081 L22: -0.0139 REMARK 3 L33: 0.1205 L12: 0.0662 REMARK 3 L13: -0.0477 L23: -0.0396 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.0347 S13: 0.0477 REMARK 3 S21: -0.0087 S22: 0.0398 S23: 0.0767 REMARK 3 S31: -0.0787 S32: -0.1315 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 781 THROUGH 1046 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7559 33.0946 33.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0594 REMARK 3 T33: 0.0543 T12: -0.0224 REMARK 3 T13: 0.0114 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.1726 L22: 0.3298 REMARK 3 L33: 0.5034 L12: 0.0273 REMARK 3 L13: -0.0802 L23: -0.1688 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0218 S13: -0.0042 REMARK 3 S21: -0.0115 S22: 0.0275 S23: -0.0127 REMARK 3 S31: 0.0138 S32: 0.0257 S33: 0.0227 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7169 12.2862 41.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.1114 REMARK 3 T33: 0.1947 T12: 0.0187 REMARK 3 T13: 0.0008 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.0408 REMARK 3 L33: 0.0074 L12: 0.0004 REMARK 3 L13: 0.0065 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: 0.0317 S13: 0.1169 REMARK 3 S21: 0.1045 S22: 0.0273 S23: -0.1432 REMARK 3 S31: 0.0070 S32: 0.0223 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2042 12.6431 55.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.1545 REMARK 3 T33: 0.4251 T12: 0.0049 REMARK 3 T13: -0.1146 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.0032 REMARK 3 L33: 0.0007 L12: -0.0029 REMARK 3 L13: 0.0001 L23: -0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.0415 S13: -0.0498 REMARK 3 S21: 0.0418 S22: 0.0495 S23: -0.0047 REMARK 3 S31: 0.0648 S32: -0.0091 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 35 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9479 14.2955 46.0754 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.2274 REMARK 3 T33: 0.3801 T12: 0.0533 REMARK 3 T13: -0.0960 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.0031 REMARK 3 L33: 0.0020 L12: 0.0054 REMARK 3 L13: -0.0117 L23: 0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0534 S13: 0.0057 REMARK 3 S21: 0.0402 S22: -0.1128 S23: -0.0380 REMARK 3 S31: -0.0734 S32: 0.1017 S33: -0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4315 19.0048 36.2496 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.0972 REMARK 3 T33: 0.1888 T12: 0.0018 REMARK 3 T13: 0.0163 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0131 L22: 0.0493 REMARK 3 L33: 0.1889 L12: 0.0152 REMARK 3 L13: 0.0492 L23: 0.0665 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.0061 S13: -0.0534 REMARK 3 S21: -0.0565 S22: 0.0009 S23: -0.2026 REMARK 3 S31: -0.0239 S32: -0.0273 S33: -0.0081 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4204 8.9102 31.5895 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1175 REMARK 3 T33: 0.1360 T12: 0.0231 REMARK 3 T13: 0.0186 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: -0.0010 L22: 0.0940 REMARK 3 L33: 0.0207 L12: -0.0033 REMARK 3 L13: -0.0377 L23: 0.0087 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: 0.0409 S13: -0.0174 REMARK 3 S21: -0.1223 S22: -0.0404 S23: 0.0295 REMARK 3 S31: 0.0297 S32: 0.0209 S33: -0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0716 -1.8312 36.4963 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1251 REMARK 3 T33: 0.2026 T12: 0.0145 REMARK 3 T13: 0.0112 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.0107 L22: 0.0088 REMARK 3 L33: 0.0119 L12: -0.0064 REMARK 3 L13: 0.0111 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: -0.0269 S13: -0.0016 REMARK 3 S21: -0.0982 S22: -0.0516 S23: 0.2191 REMARK 3 S31: 0.0775 S32: 0.0053 S33: 0.0000 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3598 1.1045 43.3248 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1213 REMARK 3 T33: 0.1332 T12: 0.0258 REMARK 3 T13: -0.0001 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.0020 L22: 0.0128 REMARK 3 L33: 0.0040 L12: -0.0077 REMARK 3 L13: 0.0054 L23: -0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: -0.0727 S13: -0.0146 REMARK 3 S21: 0.0515 S22: -0.0226 S23: -0.0516 REMARK 3 S31: -0.0286 S32: -0.0189 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9890 3.3911 37.0422 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.1214 REMARK 3 T33: 0.1981 T12: 0.0352 REMARK 3 T13: 0.0324 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0145 L22: 0.0118 REMARK 3 L33: 0.0006 L12: -0.0009 REMARK 3 L13: 0.0018 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: -0.0088 S13: 0.0204 REMARK 3 S21: -0.0531 S22: -0.0806 S23: -0.1929 REMARK 3 S31: 0.1188 S32: 0.0096 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 153620 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.748 REMARK 200 RESOLUTION RANGE LOW (A) : 32.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NYI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 92.10450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.54650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 92.10450 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 89.54650 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 92.10450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.54650 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 92.10450 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 89.54650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.10450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 89.54650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.10450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.54650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.10450 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 89.54650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.10450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 92.10450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.54650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2790 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2836 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN B 591 REMARK 465 MET B 592 REMARK 465 GLN B 593 REMARK 465 PRO B 594 REMARK 465 LYS B 595 REMARK 465 ALA B 596 REMARK 465 ARG B 744 REMARK 465 ASP B 745 REMARK 465 ASN B 746 REMARK 465 GLY B 747 REMARK 465 PRO B 748 REMARK 465 GLY B 749 REMARK 465 HIS B 750 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2210 O HOH C 478 1.83 REMARK 500 O PRO B 621 O HOH B 2101 1.84 REMARK 500 O HOH A 474 O HOH A 485 1.84 REMARK 500 NH2 ARG B 982 O HOH B 2102 1.85 REMARK 500 O HOH A 437 O HOH A 488 1.85 REMARK 500 OE2 GLU B 772 O HOH B 2103 1.85 REMARK 500 O HOH A 406 O HOH A 458 1.88 REMARK 500 O HOH B 2239 O HOH B 2246 1.89 REMARK 500 O HOH A 302 O HOH A 361 1.93 REMARK 500 O HOH B 2775 O HOH B 2779 1.93 REMARK 500 O HOH B 2626 O HOH B 2720 1.96 REMARK 500 O HOH B 2193 O HOH B 2705 1.97 REMARK 500 O HOH B 2735 O HOH B 2818 1.98 REMARK 500 OD1 ASP B 620 O HOH B 2104 1.99 REMARK 500 O HOH B 2576 O HOH B 2616 2.01 REMARK 500 O HOH A 424 O HOH A 472 2.02 REMARK 500 O HOH B 2574 O HOH B 2626 2.04 REMARK 500 OG SER B 895 O HOH B 2105 2.06 REMARK 500 OE1 GLN A 129 O HOH A 301 2.08 REMARK 500 O HOH B 2192 O HOH B 2657 2.08 REMARK 500 O HOH B 2133 O HOH B 2334 2.08 REMARK 500 O HOH B 2729 O HOH B 2731 2.09 REMARK 500 O HOH C 472 O HOH C 517 2.09 REMARK 500 O HOH B 2248 O HOH B 2671 2.10 REMARK 500 O HOH B 2378 O HOH B 2639 2.10 REMARK 500 O HOH B 2117 O HOH B 2617 2.10 REMARK 500 O HOH B 2170 O HOH B 2632 2.10 REMARK 500 O HOH A 459 O HOH A 491 2.11 REMARK 500 O HOH B 2238 O HOH B 2581 2.11 REMARK 500 ND1 HIS B 905 O HOH B 2106 2.12 REMARK 500 O HOH B 2552 O HOH B 2626 2.12 REMARK 500 O HOH A 325 O HOH A 417 2.16 REMARK 500 O HOH C 309 O HOH C 369 2.17 REMARK 500 O HOH C 501 O HOH C 503 2.17 REMARK 500 OE1 GLN C 131 O HOH C 301 2.18 REMARK 500 O HOH B 2112 O HOH B 2438 2.18 REMARK 500 O HOH C 399 O HOH C 402 2.19 REMARK 500 O HOH B 2531 O HOH B 2634 2.19 REMARK 500 O HOH A 364 O HOH A 480 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2191 O HOH C 448 3555 1.88 REMARK 500 O HOH B 2554 O HOH B 2642 5556 1.94 REMARK 500 O HOH B 2395 O HOH C 315 3555 2.11 REMARK 500 O HOH A 440 O HOH B 2341 16555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -63.41 -99.72 REMARK 500 ARG A 149 -5.21 82.94 REMARK 500 HIS B 764 -117.76 -124.82 REMARK 500 HIS B 770 62.23 -102.72 REMARK 500 GLN C 25 150.70 -49.15 REMARK 500 ASN C 26 97.91 -43.03 REMARK 500 GLU C 37 113.93 -28.50 REMARK 500 ASP C 38 44.31 70.88 REMARK 500 ASP C 119 -169.01 -161.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 25 ASN C 26 143.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2838 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B2839 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2840 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B2841 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B2842 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B2843 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B2844 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B2845 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B2846 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B2847 DISTANCE = 7.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.3 REMARK 620 3 GNP A 201 O1G 173.0 89.8 REMARK 620 4 GNP A 201 O1B 92.5 173.7 94.4 REMARK 620 5 HOH A 324 O 86.4 91.3 92.8 93.1 REMARK 620 6 HOH A 370 O 87.9 87.3 92.7 87.9 174.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 124 OG1 REMARK 620 2 HOH C 462 O 90.9 REMARK 620 3 HOH C 469 O 135.0 124.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EBY B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 202 DBREF 6BVL A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6BVL B 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 DBREF 6BVL C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6BVL GLY A 0 UNP P01112 EXPRESSION TAG SEQADV 6BVL ALA A 64 UNP P01112 TYR 64 ENGINEERED MUTATION SEQADV 6BVL GLY B 565 UNP Q07889 EXPRESSION TAG SEQADV 6BVL GLY C 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CSO SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 482 GLY GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE SEQRES 2 B 482 ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU SEQRES 3 B 482 ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA SEQRES 4 B 482 GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS SEQRES 5 B 482 MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR SEQRES 6 B 482 THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER SEQRES 7 B 482 LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO SEQRES 8 B 482 THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN SEQRES 9 B 482 PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR SEQRES 10 B 482 ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG SEQRES 11 B 482 HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP SEQRES 12 B 482 ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR SEQRES 13 B 482 VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE SEQRES 14 B 482 THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN SEQRES 15 B 482 GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO SEQRES 16 B 482 THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU SEQRES 17 B 482 THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA SEQRES 18 B 482 ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA SEQRES 19 B 482 VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS SEQRES 20 B 482 GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET SEQRES 21 B 482 ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS SEQRES 22 B 482 CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA SEQRES 23 B 482 VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN SEQRES 24 B 482 GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER SEQRES 25 B 482 ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR SEQRES 26 B 482 PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU SEQRES 27 B 482 GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR SEQRES 28 B 482 LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO SEQRES 29 B 482 PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU SEQRES 30 B 482 GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU SEQRES 31 B 482 LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE SEQRES 32 B 482 THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS SEQRES 33 B 482 LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN SEQRES 34 B 482 LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR SEQRES 35 B 482 ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG SEQRES 36 B 482 ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER SEQRES 37 B 482 TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO SEQRES 38 B 482 ARG SEQRES 1 C 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 C 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 C 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 C 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 C 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS MODRES 6BVL CSO A 51 CYS MODIFIED RESIDUE HET CSO A 51 7 HET GNP A 201 32 HET MG A 202 1 HET EBY B2001 33 HET FMT B2002 3 HET FMT B2003 3 HET FMT B2004 3 HET FMT B2005 3 HET FMT B2006 3 HET GOL B2007 6 HET GOL B2008 6 HET FMT C 201 3 HET NA C 202 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EBY N-{1-[(5-CHLORO-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-5- HETNAM 2 EBY METHYL-L-TRYPTOPHANAMIDE HETNAM FMT FORMIC ACID HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 EBY C26 H30 CL N5 O FORMUL 7 FMT 6(C H2 O2) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 15 NA NA 1+ FORMUL 16 HOH *1150(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 MET A 67 5 7 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 TYR B 575 GLU B 579 5 5 HELIX 9 AA9 THR B 605 THR B 614 1 10 HELIX 10 AB1 ASP B 620 TYR B 631 1 12 HELIX 11 AB2 ARG B 632 PHE B 634 5 3 HELIX 12 AB3 LYS B 636 GLU B 649 1 14 HELIX 13 AB4 THR B 656 ASN B 665 1 10 HELIX 14 AB5 SER B 671 TYR B 681 1 11 HELIX 15 AB6 TYR B 681 HIS B 700 1 20 HELIX 16 AB7 PHE B 701 ASP B 707 1 7 HELIX 17 AB8 ASP B 707 THR B 720 1 14 HELIX 18 AB9 GLY B 723 ALA B 725 5 3 HELIX 19 AC1 MET B 726 ALA B 743 1 18 HELIX 20 AC2 HIS B 770 PHE B 774 5 5 HELIX 21 AC3 HIS B 780 ALA B 798 1 19 HELIX 22 AC4 GLN B 800 LYS B 811 5 12 HELIX 23 AC5 ASP B 813 SER B 818 1 6 HELIX 24 AC6 SER B 818 GLU B 841 1 24 HELIX 25 AC7 ASN B 844 LEU B 865 1 22 HELIX 26 AC8 ASN B 867 ASN B 879 1 13 HELIX 27 AC9 SER B 880 ARG B 885 1 6 HELIX 28 AD1 LEU B 886 GLU B 891 1 6 HELIX 29 AD2 PRO B 894 LEU B 907 1 14 HELIX 30 AD3 SER B 908 ARG B 920 1 13 HELIX 31 AD4 PHE B 930 GLY B 943 1 14 HELIX 32 AD5 PHE B 958 GLN B 975 1 18 HELIX 33 AD6 GLU B 984 ASN B 993 1 10 HELIX 34 AD7 MET B 1001 GLU B 1017 1 17 HELIX 35 AD8 SER C 17 GLN C 25 1 9 HELIX 36 AD9 TYR C 64 ALA C 66 5 3 HELIX 37 AE1 MET C 67 THR C 74 1 8 HELIX 38 AE2 ASN C 86 ASP C 92 1 7 HELIX 39 AE3 ASP C 92 ASP C 105 1 14 HELIX 40 AE4 GLU C 126 GLY C 138 1 13 HELIX 41 AE5 GLY C 151 GLN C 165 1 15 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 ILE B 586 PHE B 588 0 SHEET 2 AA2 4 ILE B 601 GLY B 604 -1 O ALA B 603 N ILE B 587 SHEET 3 AA2 4 LYS B 953 ASN B 957 -1 O ILE B 956 N GLY B 604 SHEET 4 AA2 4 VAL B 947 ARG B 950 -1 N LEU B 948 O LEU B 955 SHEET 1 AA3 6 ARG C 41 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 THR C 2 GLY C 10 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 LYS C 117 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 SER C 145 1 O THR C 144 N LYS C 117 LINK C THR A 50 N CSO A 51 1555 1555 1.32 LINK C CSO A 51 N LEU A 52 1555 1555 1.32 LINK OG SER A 17 MG MG A 202 1555 1555 2.10 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.08 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.01 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.06 LINK MG MG A 202 O HOH A 324 1555 1555 2.05 LINK MG MG A 202 O HOH A 370 1555 1555 2.09 LINK OG1 THR C 124 NA NA C 202 1555 1555 3.17 LINK NA NA C 202 O HOH C 462 1555 1555 2.84 LINK NA NA C 202 O HOH C 469 1555 1555 2.21 CISPEP 1 PRO B 924 PRO B 925 0 11.81 CISPEP 2 ASN B 1020 PRO B 1021 0 6.68 SITE 1 AC1 32 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 32 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 32 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 32 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 32 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC1 32 SER A 145 ALA A 146 LYS A 147 MG A 202 SITE 7 AC1 32 HOH A 324 HOH A 370 HOH A 376 HOH A 379 SITE 8 AC1 32 HOH A 380 HOH A 403 HOH A 404 HOH A 433 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 324 SITE 2 AC2 5 HOH A 370 SITE 1 AC3 9 MET B 878 ASN B 879 TYR B 884 PHE B 890 SITE 2 AC3 9 LYS B 898 GLU B 902 HOH B2206 HOH B2394 SITE 3 AC3 9 HOH B2565 SITE 1 AC4 6 GLN B 566 MET B 567 HIS B 616 MET B 617 SITE 2 AC4 6 HOH B2252 HOH B2287 SITE 1 AC5 3 ARG A 128 ARG B 767 PRO B 768 SITE 1 AC6 7 GLU A 37 MET A 67 GLN A 70 ALA B 619 SITE 2 AC6 7 ARG B 688 HOH B2166 HOH B2171 SITE 1 AC7 7 GLU B 611 TYR B 615 HIS B 616 ARG B 647 SITE 2 AC7 7 TYR B 681 VAL B 685 HOH B2301 SITE 1 AC8 1 TYR B1031 SITE 1 AC9 5 SER B 793 ASP B 794 PRO B 978 TYR B 979 SITE 2 AC9 5 HOH B2289 SITE 1 AD1 5 ARG B 786 GLU B 864 VAL B1040 HOH B2107 SITE 2 AD1 5 HOH B2225 SITE 1 AD2 7 LEU B 938 GLY C 15 LYS C 16 SER C 17 SITE 2 AD2 7 HOH C 304 HOH C 370 HOH C 405 SITE 1 AD3 6 ASN C 85 ASN C 86 THR C 87 THR C 124 SITE 2 AD3 6 HOH C 462 HOH C 469 CRYST1 184.209 184.209 179.093 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005584 0.00000