HEADER LIPID TRANSPORT 20-DEC-17 6BYD TITLE CRYSTAL STRUCTURE OF THE SECOND START DOMAIN OF YEAST LAM4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ANCHORED LIPID-BINDING PROTEIN LAM4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LAM4 (YHR080C)-STARKIN DOMAIN; COMPND 5 SYNONYM: LIPID TRANSFER AT CONTACT SITE PROTEIN 3,LIPID TRANSFER COMPND 6 PROTEIN ANCHORED AT MEMBRANE CONTACT SITES 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: LAM4, LTC3, YHR080C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STEROL TRANSPORT, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JENTSCH,I.N.KIBURU,J.WU,K.PANDEY,O.BOUDKER,A.K.MENON REVDAT 6 23-OCT-24 6BYD 1 REMARK REVDAT 5 08-JAN-20 6BYD 1 REMARK REVDAT 4 25-APR-18 6BYD 1 JRNL REVDAT 3 07-MAR-18 6BYD 1 JRNL REVDAT 2 14-FEB-18 6BYD 1 REMARK REVDAT 1 31-JAN-18 6BYD 0 JRNL AUTH J.A.JENTSCH,I.KIBURU,K.PANDEY,M.TIMME,T.RAMLALL,B.LEVKAU, JRNL AUTH 2 J.WU,D.ELIEZER,O.BOUDKER,A.K.MENON JRNL TITL STRUCTURAL BASIS OF STEROL BINDING AND TRANSPORT BY A YEAST JRNL TITL 2 STARKIN DOMAIN. JRNL REF J. BIOL. CHEM. V. 293 5522 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29463678 JRNL DOI 10.1074/JBC.RA118.001881 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1113 - 3.4833 1.00 2683 148 0.1650 0.2176 REMARK 3 2 3.4833 - 2.7649 1.00 2574 134 0.2005 0.2746 REMARK 3 3 2.7649 - 2.4155 1.00 2530 136 0.2090 0.2891 REMARK 3 4 2.4155 - 2.1946 0.99 2506 126 0.2155 0.2802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1582 REMARK 3 ANGLE : 0.901 2141 REMARK 3 CHIRALITY : 0.056 248 REMARK 3 PLANARITY : 0.006 273 REMARK 3 DIHEDRAL : 3.585 979 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2956 35.2900 51.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.3740 T22: 0.7880 REMARK 3 T33: 0.3608 T12: 0.0587 REMARK 3 T13: -0.0459 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.2687 L22: 1.7386 REMARK 3 L33: 1.0710 L12: -0.2583 REMARK 3 L13: 0.1319 L23: -1.0853 REMARK 3 S TENSOR REMARK 3 S11: -0.1906 S12: 0.1919 S13: 0.1046 REMARK 3 S21: -0.2350 S22: 0.1489 S23: 0.2560 REMARK 3 S31: -0.2675 S32: -0.8834 S33: 0.0684 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1169 31.1464 51.4533 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.2815 REMARK 3 T33: 0.2544 T12: -0.0015 REMARK 3 T13: -0.0200 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.8194 L22: 2.2746 REMARK 3 L33: 3.5521 L12: -0.2522 REMARK 3 L13: -0.4603 L23: 0.6377 REMARK 3 S TENSOR REMARK 3 S11: 0.1275 S12: 0.0120 S13: -0.2330 REMARK 3 S21: -0.2193 S22: -0.1957 S23: 0.0522 REMARK 3 S31: 0.1351 S32: -0.6086 S33: 0.0130 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6696 34.9805 56.0051 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.3650 REMARK 3 T33: 0.1973 T12: -0.0005 REMARK 3 T13: -0.0131 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 4.6853 L22: 2.9526 REMARK 3 L33: 2.3017 L12: -1.3567 REMARK 3 L13: -0.7947 L23: -0.1875 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: 0.0503 S13: -0.0747 REMARK 3 S21: -0.1229 S22: -0.1972 S23: 0.2177 REMARK 3 S31: 0.0736 S32: 0.3175 S33: 0.0957 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3063 35.5204 46.3725 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.2219 REMARK 3 T33: 0.2012 T12: 0.0364 REMARK 3 T13: 0.0182 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.9064 L22: 2.0166 REMARK 3 L33: 3.4393 L12: -0.4139 REMARK 3 L13: -0.3409 L23: 0.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: 0.1730 S13: 0.0265 REMARK 3 S21: -0.2990 S22: -0.1770 S23: 0.0278 REMARK 3 S31: 0.0434 S32: 0.4091 S33: 0.0167 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2141 36.4500 44.1685 REMARK 3 T TENSOR REMARK 3 T11: 0.2826 T22: 0.2764 REMARK 3 T33: 0.2002 T12: 0.0566 REMARK 3 T13: -0.0017 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.3783 L22: 3.7245 REMARK 3 L33: 2.5551 L12: -2.4347 REMARK 3 L13: 1.2836 L23: -0.2135 REMARK 3 S TENSOR REMARK 3 S11: -0.9033 S12: -1.0738 S13: 0.3488 REMARK 3 S21: 0.2897 S22: 0.6908 S23: -0.0044 REMARK 3 S31: -0.3554 S32: -0.1096 S33: 0.0837 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8643 35.8925 45.0863 REMARK 3 T TENSOR REMARK 3 T11: 0.2288 T22: 0.3515 REMARK 3 T33: 0.3059 T12: 0.1164 REMARK 3 T13: -0.0215 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 6.6010 L22: 2.9015 REMARK 3 L33: 3.0928 L12: -0.5543 REMARK 3 L13: -0.9414 L23: -0.2215 REMARK 3 S TENSOR REMARK 3 S11: 0.4029 S12: 0.0976 S13: 0.8459 REMARK 3 S21: -0.5569 S22: -0.1449 S23: -0.1359 REMARK 3 S31: 0.0387 S32: -0.9833 S33: -0.0418 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3165 29.4205 46.2041 REMARK 3 T TENSOR REMARK 3 T11: 0.2983 T22: 0.2162 REMARK 3 T33: 0.2622 T12: -0.0043 REMARK 3 T13: -0.0352 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.9834 L22: 1.2089 REMARK 3 L33: 3.5895 L12: -0.9155 REMARK 3 L13: -0.3926 L23: 1.0726 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.1279 S13: -0.0615 REMARK 3 S21: -0.0715 S22: -0.1226 S23: 0.0919 REMARK 3 S31: 0.4120 S32: -0.4296 S33: 0.0079 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3815 24.1754 33.4529 REMARK 3 T TENSOR REMARK 3 T11: 0.4761 T22: 0.2977 REMARK 3 T33: 0.3479 T12: 0.1493 REMARK 3 T13: 0.0593 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.8244 L22: 2.0262 REMARK 3 L33: 5.0175 L12: 1.2734 REMARK 3 L13: -0.3632 L23: -0.8609 REMARK 3 S TENSOR REMARK 3 S11: -0.3710 S12: 0.1482 S13: -0.5395 REMARK 3 S21: -0.2620 S22: -0.2152 S23: -0.3883 REMARK 3 S31: 1.0578 S32: 0.4926 S33: 0.1744 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4904 26.6731 54.8422 REMARK 3 T TENSOR REMARK 3 T11: 0.3528 T22: 0.1924 REMARK 3 T33: 0.2900 T12: 0.0591 REMARK 3 T13: -0.0143 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.6457 L22: 1.8184 REMARK 3 L33: 4.0498 L12: -0.3963 REMARK 3 L13: -1.2666 L23: 0.6341 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: -0.3211 S13: -0.1417 REMARK 3 S21: -0.1965 S22: -0.0612 S23: -0.0849 REMARK 3 S31: 0.5625 S32: 0.0408 S33: 0.0071 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97494 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M LITHIUM CHLORIDE 30% PEG 6000 REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.80050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.02100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.96150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.02100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.80050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.96150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.80050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.96150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.02100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.96150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.80050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.02100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 MSE A 3 REMARK 465 PRO A 201 REMARK 465 VAL A 202 REMARK 465 LYS A 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 63.57 -68.96 REMARK 500 ASN A 115 -83.87 -147.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 6BYD A 4 203 UNP P38800 LAM4_YEAST 946 1145 SEQADV 6BYD GLY A 1 UNP P38800 CLONING ARTIFACT SEQADV 6BYD PRO A 2 UNP P38800 CLONING ARTIFACT SEQADV 6BYD MSE A 3 UNP P38800 CLONING ARTIFACT SEQRES 1 A 203 GLY PRO MSE THR LEU PRO LYS MSE GLU PRO SER SER HIS SEQRES 2 A 203 ALA PRO THR GLU PRO ASP ILE GLN LYS ASP LYS ASP ASP SEQRES 3 A 203 SER ILE ILE ARG GLU ASN GLU ASN ILE PRO ALA PRO LEU SEQRES 4 A 203 GLY THR VAL VAL GLN LEU LEU PHE GLY SER ASN THR GLU SEQRES 5 A 203 TYR MSE GLN LYS VAL ILE THR ARG ASP LYS ASN ASN VAL SEQRES 6 A 203 ASN VAL GLU THR ILE PRO LYS PHE THR PRO SER LEU VAL SEQRES 7 A 203 GLU GLY GLY SER ARG HIS TYR GLU TYR THR LYS LYS LEU SEQRES 8 A 203 ASN ASN SER ILE GLY PRO LYS GLN THR LYS CYS LEU LEU SEQRES 9 A 203 THR GLU SER ILE GLU HIS MSE ASP ILE ASN ASN TYR VAL SEQRES 10 A 203 LEU VAL THR GLN THR THR LYS THR PRO ASP VAL PRO SER SEQRES 11 A 203 GLY SER ASN PHE ALA VAL GLU SER LYS ILE PHE LEU PHE SEQRES 12 A 203 TRP GLY GLN HIS ASP THR THR ASN MSE THR VAL ILE THR SEQRES 13 A 203 LYS ILE ASN TRP THR SER LYS SER PHE LEU LYS GLY ALA SEQRES 14 A 203 ILE GLU LYS GLY SER VAL GLU GLY GLN LYS VAL SER VAL SEQRES 15 A 203 ASP TYR MSE LEU SER GLU LEU ARG ASP ILE ILE SER ARG SEQRES 16 A 203 ALA LYS SER LYS LYS PRO VAL LYS MODRES 6BYD MSE A 8 MET MODIFIED RESIDUE MODRES 6BYD MSE A 54 MET MODIFIED RESIDUE MODRES 6BYD MSE A 111 MET MODIFIED RESIDUE MODRES 6BYD MSE A 152 MET MODIFIED RESIDUE MODRES 6BYD MSE A 185 MET MODIFIED RESIDUE HET MSE A 8 8 HET MSE A 54 8 HET MSE A 111 8 HET MSE A 152 8 HET MSE A 185 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *48(H2 O) HELIX 1 AA1 PRO A 38 GLY A 48 1 11 HELIX 2 AA2 THR A 51 ASP A 61 1 11 HELIX 3 AA3 SER A 130 SER A 132 5 3 HELIX 4 AA4 GLN A 146 ASP A 148 5 3 HELIX 5 AA5 LEU A 166 SER A 198 1 33 SHEET 1 AA1 7 SER A 27 ILE A 35 0 SHEET 2 AA1 7 THR A 150 TRP A 160 -1 O THR A 150 N ILE A 35 SHEET 3 AA1 7 PHE A 134 TRP A 144 -1 N LYS A 139 O ILE A 155 SHEET 4 AA1 7 TYR A 116 LYS A 124 -1 N VAL A 117 O LEU A 142 SHEET 5 AA1 7 GLN A 99 MSE A 111 -1 N THR A 105 O THR A 122 SHEET 6 AA1 7 SER A 82 LYS A 90 -1 N TYR A 87 O CYS A 102 SHEET 7 AA1 7 ASN A 64 VAL A 65 -1 N VAL A 65 O THR A 88 LINK C LYS A 7 N MSE A 8 1555 1555 1.34 LINK C MSE A 8 N GLU A 9 1555 1555 1.38 LINK C TYR A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N GLN A 55 1555 1555 1.33 LINK C HIS A 110 N MSE A 111 1555 1555 1.32 LINK C MSE A 111 N ASP A 112 1555 1555 1.34 LINK C ASN A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N THR A 153 1555 1555 1.33 LINK C TYR A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N LEU A 186 1555 1555 1.34 CISPEP 1 GLU A 9 PRO A 10 0 1.58 CISPEP 2 THR A 74 PRO A 75 0 -2.61 CRYST1 45.601 67.923 132.042 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007573 0.00000