HEADER MEMBRANE PROTEIN 21-DEC-17 6BYO TITLE RESIDUE ASSIGNMENT CORRECTION TO THE VOLTAGE GATED CALCIUM CAV1.1 TITLE 2 RABBIT ALPHA 1 SUBUNIT PDB ENTRIES 3JBR & 5GJV COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1S; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALCIUM CHANNEL,L TYPE,ALPHA-1 POLYPEPTIDE,ISOFORM 3, COMPND 5 SKELETAL MUSCLE,DIHYDROPYRIDINE RECEPTOR ALPHA-1S SUBUNIT,DHPR, COMPND 6 VOLTAGE-GATED CALCIUM CHANNEL SUBUNIT ALPHA CAV1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS VOLTAGE-GATED CALCIUM CHANNELS, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR T.J.CARDOZO,W.MARTINEZ-ORTIZ REVDAT 5 04-DEC-19 6BYO 1 REMARK REVDAT 4 17-APR-19 6BYO 1 REMARK REVDAT 3 20-FEB-19 6BYO 1 REMARK REVDAT 2 16-MAY-18 6BYO 1 JRNL REVDAT 1 02-MAY-18 6BYO 0 JRNL AUTH W.MARTINEZ-ORTIZ,T.J.CARDOZO JRNL TITL AN IMPROVED METHOD FOR MODELING VOLTAGE-GATED ION CHANNELS JRNL TITL 2 AT ATOMIC ACCURACY APPLIED TO HUMAN CAVCHANNELS. JRNL REF CELL REP V. 23 1399 2018 JRNL REFN ESSN 2211-1247 JRNL PMID 29719253 JRNL DOI 10.1016/J.CELREP.2018.04.024 REMARK 0 REMARK 0 THIS ENTRY 6BYO REFLECTS AN ALTERNATIVE MODELING OF THE REMARK 0 ORIGINAL DATA IN EMD-9513, DETERMINED BY J.P.WU,Z.YAN REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: EMD-9513 REMARK 0 AUTH J.WU,Z.YAN,Z.LI,X.QIAN,S.LU,M.DONG,Q.ZHOU,N.YAN REMARK 0 TITL STRUCTURE OF THE VOLTAGE-GATED CALCIUM CHANNEL CA(V)1.1. REMARK 0 REF NATURE V. 537 191 2016 REMARK 0 REFN ESSN 1476-4687 REMARK 0 PMID 27580036 REMARK 0 DOI 10.1038/NATURE19321 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.WU,Z.YAN,Z.LI,C.YAN,S.LU,M.DONG,N.YAN REMARK 1 TITL STRUCTURE OF THE VOLTAGE-GATED CALCIUM CHANNEL CAV1.1 REMARK 1 TITL 2 COMPLEX. REMARK 1 REF SCIENCE V. 350 D2395 2015 REMARK 1 REFN ESSN 1095-9203 REMARK 1 PMID 26680202 REMARK 1 DOI 10.1126/SCIENCE.AAD2395 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 527833 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: OVERALL RESOLUTION OF ENTIRE COMPLEX REMARK 4 REMARK 4 6BYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231771. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RABBIT VOLTAGE GATED CALCIUM REMARK 245 CAV1.1 ALPHA 1 SUBUNIT. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 50.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 108A REMARK 465 PHE A 108B REMARK 465 LEU A 108C REMARK 465 PHE A 108D REMARK 465 HIS A 108E REMARK 465 GLN A 108F REMARK 465 ASP A 108G REMARK 465 ALA A 108H REMARK 465 TYR A 108I REMARK 465 LEU A 108J REMARK 465 GLU A 140 REMARK 465 GLN A 141 REMARK 465 VAL A 142 REMARK 465 ASN A 143 REMARK 465 VAL A 144 REMARK 465 ILE A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 ASN A 148 REMARK 465 THR A 149 REMARK 465 ALA A 150 REMARK 465 PRO A 151 REMARK 465 MET A 152 REMARK 465 SER A 153 REMARK 465 SER A 154 REMARK 465 LYS A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 159 REMARK 465 ASP A 160 REMARK 465 ASP A 377 REMARK 465 VAL A 378 REMARK 465 GLU A 379 REMARK 465 ASP A 380 REMARK 465 LEU A 381 REMARK 465 ARG A 382 REMARK 465 GLU A 383 REMARK 465 GLY A 384 REMARK 465 LYS A 385 REMARK 465 LEU A 386 REMARK 465 SER A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 GLU A 390 REMARK 465 GLY A 391 REMARK 465 GLY A 392 REMARK 465 SER A 393 REMARK 465 ASP A 394 REMARK 465 THR A 395 REMARK 465 GLU A 396 REMARK 465 SER A 397 REMARK 465 LEU A 398 REMARK 465 TYR A 399 REMARK 465 GLU A 400 REMARK 465 ILE A 401 REMARK 465 GLU A 402 REMARK 465 GLY A 403 REMARK 465 LEU A 404 REMARK 465 ASN A 405 REMARK 465 LYS A 406 REMARK 465 ILE A 407 REMARK 465 ILE A 408 REMARK 465 GLN A 409 REMARK 465 PHE A 410 REMARK 465 ILE A 411 REMARK 465 ARG A 412 REMARK 465 HIS A 413 REMARK 465 TRP A 414 REMARK 465 ARG A 415 REMARK 465 GLN A 416 REMARK 465 LEU A 670 REMARK 465 THR A 671 REMARK 465 SER A 672 REMARK 465 ALA A 673 REMARK 465 GLN A 674 REMARK 465 LYS A 675 REMARK 465 ALA A 676 REMARK 465 LYS A 677 REMARK 465 ALA A 678 REMARK 465 GLU A 679 REMARK 465 GLU A 680 REMARK 465 ARG A 681 REMARK 465 LYS A 682 REMARK 465 ARG A 683 REMARK 465 ARG A 684 REMARK 465 LYS A 685 REMARK 465 MET A 686 REMARK 465 SER A 687 REMARK 465 ARG A 688 REMARK 465 GLY A 689 REMARK 465 LEU A 690 REMARK 465 PRO A 691 REMARK 465 ASP A 692 REMARK 465 LYS A 693 REMARK 465 THR A 694 REMARK 465 GLU A 695 REMARK 465 GLU A 696 REMARK 465 GLU A 697 REMARK 465 LYS A 698 REMARK 465 SER A 699 REMARK 465 VAL A 700 REMARK 465 MET A 701 REMARK 465 ALA A 702 REMARK 465 LYS A 703 REMARK 465 LYS A 704 REMARK 465 LEU A 705 REMARK 465 GLU A 706 REMARK 465 GLN A 707 REMARK 465 LYS A 708 REMARK 465 PRO A 709 REMARK 465 LYS A 710 REMARK 465 GLY A 711 REMARK 465 GLU A 712 REMARK 465 GLY A 713 REMARK 465 ILE A 714 REMARK 465 PRO A 715 REMARK 465 THR A 716 REMARK 465 THR A 717 REMARK 465 ALA A 718 REMARK 465 LYS A 719 REMARK 465 LEU A 720 REMARK 465 LYS A 721 REMARK 465 VAL A 722 REMARK 465 ASP A 723 REMARK 465 GLU A 724 REMARK 465 PHE A 725 REMARK 465 GLU A 726 REMARK 465 SER A 727 REMARK 465 ASN A 728 REMARK 465 VAL A 729 REMARK 465 ASN A 730 REMARK 465 GLU A 731 REMARK 465 VAL A 732 REMARK 465 LYS A 733 REMARK 465 ASP A 734 REMARK 465 PRO A 735 REMARK 465 TYR A 736 REMARK 465 PRO A 737 REMARK 465 SER A 738 REMARK 465 ALA A 739 REMARK 465 ASP A 740 REMARK 465 PHE A 741 REMARK 465 PRO A 742 REMARK 465 GLY A 743 REMARK 465 ASP A 744 REMARK 465 ASP A 745 REMARK 465 GLU A 746 REMARK 465 GLU A 747 REMARK 465 ASP A 748 REMARK 465 GLU A 749 REMARK 465 PRO A 750 REMARK 465 GLU A 751 REMARK 465 ILE A 752 REMARK 465 PRO A 753 REMARK 465 VAL A 754 REMARK 465 SER A 755 REMARK 465 PRO A 756 REMARK 465 ARG A 757 REMARK 465 PRO A 758 REMARK 465 ARG A 759 REMARK 465 PRO A 760 REMARK 465 LEU A 761 REMARK 465 ALA A 762 REMARK 465 GLU A 763 REMARK 465 LEU A 764 REMARK 465 GLN A 765 REMARK 465 LEU A 766 REMARK 465 LYS A 767 REMARK 465 GLU A 768 REMARK 465 LYS A 769 REMARK 465 ALA A 770 REMARK 465 VAL A 771 REMARK 465 PRO A 772 REMARK 465 ILE A 773 REMARK 465 PRO A 774 REMARK 465 GLU A 775 REMARK 465 ALA A 776 REMARK 465 SER A 777 REMARK 465 SER A 778 REMARK 465 PHE A 779 REMARK 465 PHE A 780 REMARK 465 ILE A 781 REMARK 465 PHE A 782 REMARK 465 SER A 783 REMARK 465 PRO A 784 REMARK 465 THR A 785 REMARK 465 ASN A 786 REMARK 465 LYS A 787 REMARK 465 GLY A 854A REMARK 465 ALA A 854B REMARK 465 PHE A 854C REMARK 465 LEU A 854D REMARK 465 HIS A 854E REMARK 465 LYS A 854F REMARK 465 GLY A 854G REMARK 465 SER A 854H REMARK 465 PHE A 854I REMARK 465 CYS A 854J REMARK 465 GLU A 886 REMARK 465 SER A 887 REMARK 465 SER A 888 REMARK 465 THR A 889 REMARK 465 ILE A 890 REMARK 465 SER A 891 REMARK 465 LEU A 1206 REMARK 465 ALA A 1207 REMARK 465 SER A 1208 REMARK 465 SER A 1209 REMARK 465 GLY A 1210 REMARK 465 GLY A 1211 REMARK 465 LEU A 1212 REMARK 465 TYR A 1213 REMARK 465 CYS A 1214 REMARK 465 LEU A 1215 REMARK 465 GLY A 1216 REMARK 465 GLY A 1217 REMARK 465 GLY A 1218 REMARK 465 CYS A 1219 REMARK 465 GLY A 1220 REMARK 465 ASN A 1221 REMARK 465 VAL A 1222 REMARK 465 ASP A 1223 REMARK 465 PRO A 1224 REMARK 465 ASP A 1225 REMARK 465 GLU A 1226 REMARK 465 SER A 1227 REMARK 465 ALA A 1228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 SER A 956 HH11 ARG A 1022 1.13 REMARK 500 O TRP A 1016 H LEU A 1020 1.31 REMARK 500 O LYS A 224 HG3 PRO A 266 1.34 REMARK 500 O PHE A 581 H ARG A 584 1.42 REMARK 500 OD2 ASP A 1203 HD2 ARG A 1229 1.45 REMARK 500 O ILE A 538 HD1 TYR A 541 1.45 REMARK 500 O ASP A 1339 H GLU A 1341 1.48 REMARK 500 O THR A 95 H ILE A 99 1.49 REMARK 500 O GLY A 1285 H PHE A 1289 1.51 REMARK 500 O ASN A 993 H PHE A 995 1.53 REMARK 500 O ILE A 559 H LEU A 563 1.54 REMARK 500 O CYS A 44 H VAL A 48 1.54 REMARK 500 O SER A 1263 H GLN A 1265 1.54 REMARK 500 O ALA A 467 H LEU A 471 1.54 REMARK 500 O ILE A 659 H ASN A 663 1.57 REMARK 500 HH21 ARG A 823 OE2 GLU A 1341 1.58 REMARK 500 O LYS A 1168 H PHE A 1172 1.59 REMARK 500 OD2 ASP A 820 HD22 ASN A 829 1.59 REMARK 500 HE22 GLN A 287 OH TYR A 621 1.59 REMARK 500 O VAL A 433 H LEU A 437 1.59 REMARK 500 HZ2 LYS A 976 OE2 GLU A 984 1.60 REMARK 500 OD2 ASP A 1296 NH2 ARG A 1302 1.72 REMARK 500 OE1 GLU A 984 NH1 ARG A 986 1.81 REMARK 500 OD2 ASP A 959 NH1 ARG A 988 1.96 REMARK 500 NZ LYS A 356 OE2 GLU A 360 2.06 REMARK 500 O THR A 231 NH2 ARG A 262 2.06 REMARK 500 OD1 ASP A 500 NZ LYS A 537 2.09 REMARK 500 OE2 GLU A 966 NH1 ARG A 969 2.14 REMARK 500 OE1 GLU A 90 NH2 ARG A 168 2.16 REMARK 500 NZ LYS A 976 OE2 GLU A 984 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 171 C ARG A 171 O 0.251 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 172 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 SER A 181 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 SER A 281 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LEU A 326 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 333 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 LEU A 440 CB - CA - C ANGL. DEV. = 11.4 DEGREES REMARK 500 LEU A 949 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 PHE A 954 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 CYS A 957 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 CYS A1100 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 ALA A1174 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 35 -11.20 71.30 REMARK 500 LEU A 40 -9.45 -57.89 REMARK 500 TRP A 50 -139.47 -61.33 REMARK 500 TYR A 71 99.66 -69.28 REMARK 500 ASN A 80 -92.56 -71.30 REMARK 500 SER A 81 -43.41 -146.65 REMARK 500 SER A 181 -29.79 83.71 REMARK 500 THR A 231 -158.43 -152.63 REMARK 500 GLU A 238 -21.82 66.07 REMARK 500 ASN A 239 -6.76 -144.19 REMARK 500 SER A 250 -9.68 75.45 REMARK 500 ARG A 252 89.01 46.83 REMARK 500 PRO A 253 -18.70 -49.51 REMARK 500 THR A 255 39.57 -95.93 REMARK 500 ASN A 257 76.21 63.98 REMARK 500 PRO A 268 171.48 -55.69 REMARK 500 ASN A 269 -57.41 -26.86 REMARK 500 THR A 273 50.77 -117.75 REMARK 500 ASN A 277 105.93 71.02 REMARK 500 PHE A 278 -39.32 -38.01 REMARK 500 ASN A 302 -3.88 -56.14 REMARK 500 ASN A 307 -165.86 -77.58 REMARK 500 GLU A 308 -20.24 73.92 REMARK 500 SER A 346 38.53 -97.81 REMARK 500 SER A 451 -73.68 -66.85 REMARK 500 LEU A 458 -25.98 -141.69 REMARK 500 TRP A 542 112.48 69.77 REMARK 500 ASP A 586 -61.90 -96.45 REMARK 500 PHE A 587 -12.04 72.08 REMARK 500 ASP A 615 37.54 70.04 REMARK 500 TYR A 627 -71.12 -73.23 REMARK 500 PRO A 630 128.82 -32.13 REMARK 500 TYR A 632 -70.33 -73.64 REMARK 500 GLU A 819 -99.06 -77.67 REMARK 500 ASP A 820 -62.09 -107.01 REMARK 500 ILE A 822 77.78 -112.76 REMARK 500 ARG A 823 -43.37 -135.96 REMARK 500 ARG A 903 -71.97 -26.20 REMARK 500 MET A 963 -6.14 68.05 REMARK 500 CYS A 968 77.29 -109.92 REMARK 500 ASP A 977 -90.07 25.73 REMARK 500 PRO A 980 42.61 -85.88 REMARK 500 ASN A 993 43.82 -80.34 REMARK 500 ASP A 994 -19.14 59.91 REMARK 500 PHE A 995 41.17 -140.34 REMARK 500 ASP A 998 -52.09 -121.20 REMARK 500 ASP A1025 3.64 -68.84 REMARK 500 ASN A1027 -159.18 -138.02 REMARK 500 ASN A1078 -70.91 -114.35 REMARK 500 CYS A1079 42.51 35.03 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 228 ILE A 229 -149.01 REMARK 500 ILE A 229 GLY A 230 146.32 REMARK 500 VAL A 237 GLU A 238 148.40 REMARK 500 PRO A 266 GLY A 267 -122.89 REMARK 500 PRO A 268 ASN A 269 -128.54 REMARK 500 GLN A 456 PRO A 457 -131.10 REMARK 500 GLY A 628 GLY A 629 -144.11 REMARK 500 GLY A 629 PRO A 630 -114.13 REMARK 500 TYR A 1344 ALA A 1345 -144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5GJV RELATED DB: PDB REMARK 900 CORRECTION OF 5GJV'S CHAIN A RESIDUE ASSIGNMENT REMARK 900 RELATED ID: 3JBR RELATED DB: PDB REMARK 900 CORRECTION OF 3JBR'S CHAIN A RESIDUE ASSIGNMENT REMARK 900 RELATED ID: EMD-9513 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-9513 RELATED DB: EMDB DBREF 6BYO A 32 1388 UNP P07293 CAC1S_RABIT 32 1388 SEQRES 1 A 1357 PHE CYS LEU THR LEU GLN ASN PRO LEU ARG LYS ALA CYS SEQRES 2 A 1357 ILE SER ILE VAL GLU TRP LYS PRO PHE GLU THR ILE ILE SEQRES 3 A 1357 LEU LEU THR ILE PHE ALA ASN CYS VAL ALA LEU ALA VAL SEQRES 4 A 1357 TYR LEU PRO MET PRO GLU ASP ASP ASN ASN SER LEU ASN SEQRES 5 A 1357 LEU GLY LEU GLU LYS LEU GLU TYR PHE PHE LEU THR VAL SEQRES 6 A 1357 PHE SER ILE GLU ALA ALA MET LYS ILE ILE ALA TYR GLY SEQRES 7 A 1357 PHE LEU PHE HIS GLN ASP ALA TYR LEU ARG SER GLY TRP SEQRES 8 A 1357 ASN VAL LEU ASP PHE ILE ILE VAL PHE LEU GLY VAL PHE SEQRES 9 A 1357 THR ALA ILE LEU GLU GLN VAL ASN VAL ILE GLN SER ASN SEQRES 10 A 1357 THR ALA PRO MET SER SER LYS GLY ALA GLY LEU ASP VAL SEQRES 11 A 1357 LYS ALA LEU ARG ALA PHE ARG VAL LEU ARG PRO LEU ARG SEQRES 12 A 1357 LEU VAL SER GLY VAL PRO SER LEU GLN VAL VAL LEU ASN SEQRES 13 A 1357 SER ILE PHE LYS ALA MET LEU PRO LEU PHE HIS ILE ALA SEQRES 14 A 1357 LEU LEU VAL LEU PHE MET VAL ILE ILE TYR ALA ILE ILE SEQRES 15 A 1357 GLY LEU GLU LEU PHE LYS GLY LYS MET HIS LYS THR CYS SEQRES 16 A 1357 TYR TYR ILE GLY THR ASP ILE VAL ALA THR VAL GLU ASN SEQRES 17 A 1357 GLU LYS PRO SER PRO CYS ALA ARG THR GLY SER GLY ARG SEQRES 18 A 1357 PRO CYS THR ILE ASN GLY SER GLU CYS ARG GLY GLY TRP SEQRES 19 A 1357 PRO GLY PRO ASN HIS GLY ILE THR HIS PHE ASP ASN PHE SEQRES 20 A 1357 GLY PHE SER MET LEU THR VAL TYR GLN CYS ILE THR MET SEQRES 21 A 1357 GLU GLY TRP THR ASP VAL LEU TYR TRP VAL ASN ASP ALA SEQRES 22 A 1357 ILE GLY ASN GLU TRP PRO TRP ILE TYR PHE VAL THR LEU SEQRES 23 A 1357 ILE LEU LEU GLY SER PHE PHE ILE LEU ASN LEU VAL LEU SEQRES 24 A 1357 GLY VAL LEU SER GLY GLU PHE THR LYS GLU ARG GLU LYS SEQRES 25 A 1357 ALA LYS SER ARG GLY THR PHE GLN LYS LEU ARG GLU LYS SEQRES 26 A 1357 GLN GLN LEU GLU GLU ASP LEU ARG GLY TYR MET SER TRP SEQRES 27 A 1357 ILE THR GLN GLY GLU VAL MET ASP VAL GLU ASP LEU ARG SEQRES 28 A 1357 GLU GLY LYS LEU SER LEU GLU GLU GLY GLY SER ASP THR SEQRES 29 A 1357 GLU SER LEU TYR GLU ILE GLU GLY LEU ASN LYS ILE ILE SEQRES 30 A 1357 GLN PHE ILE ARG HIS TRP ARG GLN TRP ASN ARG VAL PHE SEQRES 31 A 1357 ARG TRP LYS CYS HIS ASP LEU VAL LYS SER ARG VAL PHE SEQRES 32 A 1357 TYR TRP LEU VAL ILE LEU ILE VAL ALA LEU ASN THR LEU SEQRES 33 A 1357 SER ILE ALA SER GLU HIS HIS ASN GLN PRO LEU TRP LEU SEQRES 34 A 1357 THR HIS LEU GLN ASP ILE ALA ASN ARG VAL LEU LEU SER SEQRES 35 A 1357 LEU PHE THR ILE GLU MET LEU LEU LYS MET TYR GLY LEU SEQRES 36 A 1357 GLY LEU ARG GLN TYR PHE MET SER ILE PHE ASN ARG PHE SEQRES 37 A 1357 ASP CYS PHE VAL VAL CYS SER GLY ILE LEU GLU LEU LEU SEQRES 38 A 1357 LEU VAL GLU SER GLY ALA MET THR PRO LEU GLY ILE SER SEQRES 39 A 1357 VAL LEU ARG CYS ILE ARG LEU LEU ARG LEU PHE LYS ILE SEQRES 40 A 1357 THR LYS TYR TRP THR SER LEU SER ASN LEU VAL ALA SER SEQRES 41 A 1357 LEU LEU ASN SER ILE ARG SER ILE ALA SER LEU LEU LEU SEQRES 42 A 1357 LEU LEU PHE LEU PHE ILE ILE ILE PHE ALA LEU LEU GLY SEQRES 43 A 1357 MET GLN LEU PHE GLY GLY ARG TYR ASP PHE GLU ASP THR SEQRES 44 A 1357 GLU VAL ARG ARG SER ASN PHE ASP ASN PHE PRO GLN ALA SEQRES 45 A 1357 LEU ILE SER VAL PHE GLN VAL LEU THR GLY GLU ASP TRP SEQRES 46 A 1357 ASN SER VAL MET TYR ASN GLY ILE MET ALA TYR GLY GLY SEQRES 47 A 1357 PRO SER TYR PRO GLY VAL LEU VAL CYS ILE TYR PHE ILE SEQRES 48 A 1357 ILE LEU PHE VAL CYS GLY ASN TYR ILE LEU LEU ASN VAL SEQRES 49 A 1357 PHE LEU ALA ILE ALA VAL ASP ASN LEU ALA GLU ALA GLU SEQRES 50 A 1357 SER LEU THR SER ALA GLN LYS ALA LYS ALA GLU GLU ARG SEQRES 51 A 1357 LYS ARG ARG LYS MET SER ARG GLY LEU PRO ASP LYS THR SEQRES 52 A 1357 GLU GLU GLU LYS SER VAL MET ALA LYS LYS LEU GLU GLN SEQRES 53 A 1357 LYS PRO LYS GLY GLU GLY ILE PRO THR THR ALA LYS LEU SEQRES 54 A 1357 LYS VAL ASP GLU PHE GLU SER ASN VAL ASN GLU VAL LYS SEQRES 55 A 1357 ASP PRO TYR PRO SER ALA ASP PHE PRO GLY ASP ASP GLU SEQRES 56 A 1357 GLU ASP GLU PRO GLU ILE PRO VAL SER PRO ARG PRO ARG SEQRES 57 A 1357 PRO LEU ALA GLU LEU GLN LEU LYS GLU LYS ALA VAL PRO SEQRES 58 A 1357 ILE PRO GLU ALA SER SER PHE PHE ILE PHE SER PRO THR SEQRES 59 A 1357 ASN LYS VAL ARG VAL LEU CYS HIS ARG ILE VAL ASN ALA SEQRES 60 A 1357 THR TRP PHE THR ASN PHE ILE LEU LEU PHE ILE LEU LEU SEQRES 61 A 1357 SER SER ALA ALA LEU ALA ALA GLU ASP PRO ILE ARG ALA SEQRES 62 A 1357 GLU SER VAL ARG ASN GLN ILE LEU GLY TYR PHE ASP ILE SEQRES 63 A 1357 ALA PHE THR SER VAL PHE THR VAL GLU ILE VAL LEU LYS SEQRES 64 A 1357 MET THR THR TYR GLY ALA PHE LEU HIS LYS GLY SER PHE SEQRES 65 A 1357 CYS ARG ASN TYR PHE ASN ILE LEU ASP LEU LEU VAL VAL SEQRES 66 A 1357 ALA VAL SER LEU ILE SER MET GLY LEU GLU SER SER THR SEQRES 67 A 1357 ILE SER VAL VAL LYS ILE LEU ARG VAL LEU ARG VAL LEU SEQRES 68 A 1357 ARG PRO LEU ARG ALA ILE ASN ARG ALA LYS GLY LEU LYS SEQRES 69 A 1357 HIS VAL VAL GLN CYS VAL PHE VAL ALA ILE ARG THR ILE SEQRES 70 A 1357 GLY ASN ILE VAL LEU VAL THR THR LEU LEU GLN PHE MET SEQRES 71 A 1357 PHE ALA CYS ILE GLY VAL GLN LEU PHE LYS GLY LYS PHE SEQRES 72 A 1357 PHE SER CYS ASN ASP LEU SER LYS MET THR GLU GLU GLU SEQRES 73 A 1357 CYS ARG GLY TYR TYR TYR VAL TYR LYS ASP GLY ASP PRO SEQRES 74 A 1357 THR GLN MET GLU LEU ARG PRO ARG GLN TRP ILE HIS ASN SEQRES 75 A 1357 ASP PHE HIS PHE ASP ASN VAL LEU SER ALA MET MET SER SEQRES 76 A 1357 LEU PHE THR VAL SER THR PHE GLU GLY TRP PRO GLN LEU SEQRES 77 A 1357 LEU TYR ARG ALA ILE ASP SER ASN GLU GLU ASP MET GLY SEQRES 78 A 1357 PRO VAL TYR ASN ASN ARG VAL GLU MET ALA ILE PHE PHE SEQRES 79 A 1357 ILE ILE TYR ILE ILE LEU ILE ALA PHE PHE MET MET ASN SEQRES 80 A 1357 ILE PHE VAL GLY PHE VAL ILE VAL THR PHE GLN GLU GLN SEQRES 81 A 1357 GLY GLU THR GLU TYR LYS ASN CYS GLU LEU ASP LYS ASN SEQRES 82 A 1357 GLN ARG GLN CYS VAL GLN TYR ALA LEU LYS ALA ARG PRO SEQRES 83 A 1357 LEU ARG CYS TYR ILE PRO LYS ASN PRO TYR GLN TYR GLN SEQRES 84 A 1357 VAL TRP TYR VAL VAL THR SER SER TYR PHE GLU TYR LEU SEQRES 85 A 1357 MET PHE ALA LEU ILE MET LEU ASN THR ILE CYS LEU GLY SEQRES 86 A 1357 MET GLN HIS TYR HIS GLN SER GLU GLU MET ASN HIS ILE SEQRES 87 A 1357 SER ASP ILE LEU ASN VAL ALA PHE THR ILE ILE PHE THR SEQRES 88 A 1357 LEU GLU MET ILE LEU LYS LEU LEU ALA PHE LYS ALA ARG SEQRES 89 A 1357 GLY TYR PHE GLY ASP PRO TRP ASN VAL PHE ASP PHE LEU SEQRES 90 A 1357 ILE VAL ILE GLY SER ILE ILE ASP VAL ILE LEU SER GLU SEQRES 91 A 1357 ILE ASP THR PHE LEU ALA SER SER GLY GLY LEU TYR CYS SEQRES 92 A 1357 LEU GLY GLY GLY CYS GLY ASN VAL ASP PRO ASP GLU SER SEQRES 93 A 1357 ALA ARG ILE SER SER ALA PHE PHE ARG LEU PHE ARG VAL SEQRES 94 A 1357 MET ARG LEU ILE LYS LEU LEU SER ARG ALA GLU GLY VAL SEQRES 95 A 1357 ARG THR LEU LEU TRP THR PHE ILE LYS SER PHE GLN ALA SEQRES 96 A 1357 LEU PRO TYR VAL ALA LEU LEU ILE VAL MET LEU PHE PHE SEQRES 97 A 1357 ILE TYR ALA VAL ILE GLY MET GLN MET PHE GLY LYS ILE SEQRES 98 A 1357 ALA LEU VAL ASP GLY THR GLN ILE ASN ARG ASN ASN ASN SEQRES 99 A 1357 PHE GLN THR PHE PRO GLN ALA VAL LEU LEU LEU PHE ARG SEQRES 100 A 1357 CYS ALA THR GLY GLU ALA TRP GLN GLU ILE LEU LEU ALA SEQRES 101 A 1357 CYS SER TYR GLY LYS LEU CYS ASP PRO GLU SER ASP TYR SEQRES 102 A 1357 ALA PRO GLY GLU GLU TYR THR CYS GLY THR ASN PHE ALA SEQRES 103 A 1357 TYR TYR TYR PHE ILE SER PHE TYR MET LEU CYS ALA PHE SEQRES 104 A 1357 LEU ILE ILE ASN LEU PHE VAL ALA VAL ILE MET ASP ASN SEQRES 105 A 1357 PHE ASP TYR LEU THR HELIX 1 AA1 ARG A 41 GLU A 49 1 9 HELIX 2 AA2 PRO A 52 LEU A 68 1 17 HELIX 3 AA3 SER A 81 TYR A 108 1 28 HELIX 4 AA4 SER A 115 LEU A 120 1 6 HELIX 5 AA5 LEU A 120 LEU A 134 1 15 HELIX 6 AA6 ALA A 166 LEU A 170 5 5 HELIX 7 AA7 ARG A 171 VAL A 179 1 9 HELIX 8 AA8 SER A 181 LYS A 191 1 11 HELIX 9 AA9 LEU A 196 LYS A 219 1 24 HELIX 10 AB1 ASN A 277 VAL A 285 1 9 HELIX 11 AB2 VAL A 285 THR A 290 1 6 HELIX 12 AB3 GLY A 293 ILE A 305 1 13 HELIX 13 AB4 PRO A 310 GLU A 336 1 27 HELIX 14 AB5 GLU A 336 ARG A 341 1 6 HELIX 15 AB6 GLU A 342 ALA A 344 5 3 HELIX 16 AB7 SER A 346 VAL A 375 1 30 HELIX 17 AB8 ARG A 419 LEU A 428 1 10 HELIX 18 AB9 ARG A 432 ILE A 449 1 18 HELIX 19 AC1 LEU A 458 GLY A 485 1 28 HELIX 20 AC2 GLY A 487 SER A 494 1 8 HELIX 21 AC3 SER A 494 GLY A 517 1 24 HELIX 22 AC4 THR A 520 LEU A 532 1 13 HELIX 23 AC5 LEU A 533 TYR A 541 5 9 HELIX 24 AC6 SER A 544 ARG A 557 1 14 HELIX 25 AC7 SER A 561 PHE A 581 1 21 HELIX 26 AC8 PRO A 601 THR A 612 1 12 HELIX 27 AC9 ASP A 615 GLY A 628 1 14 HELIX 28 AD1 GLY A 634 CYS A 638 5 5 HELIX 29 AD2 ILE A 639 ILE A 651 1 13 HELIX 30 AD3 ASN A 654 ASN A 663 1 10 HELIX 31 AD4 ALA A 665 SER A 669 5 5 HELIX 32 AD5 ARG A 789 ASN A 797 1 9 HELIX 33 AD6 ALA A 798 ALA A 818 1 21 HELIX 34 AD7 SER A 826 THR A 852 1 27 HELIX 35 AD8 ASN A 861 LEU A 880 1 20 HELIX 36 AD9 LYS A 894 LEU A 899 1 6 HELIX 37 AE1 ARG A 900 LEU A 902 5 3 HELIX 38 AE2 ARG A 903 ASN A 909 1 7 HELIX 39 AE3 GLY A 913 PHE A 950 1 38 HELIX 40 AE4 ASN A 999 VAL A 1010 1 12 HELIX 41 AE5 GLY A 1015 ASP A 1025 1 11 HELIX 42 AE6 ARG A 1038 ALA A 1042 5 5 HELIX 43 AE7 ILE A 1043 GLU A 1073 1 31 HELIX 44 AE8 LYS A 1083 LEU A 1093 1 11 HELIX 45 AE9 ASN A 1105 THR A 1116 1 12 HELIX 46 AF1 SER A 1117 PHE A 1125 1 9 HELIX 47 AF2 PHE A 1125 MET A 1137 1 13 HELIX 48 AF3 SER A 1143 LYS A 1173 1 31 HELIX 49 AF4 ASP A 1180 THR A 1204 1 25 HELIX 50 AF5 ARG A 1229 PHE A 1235 5 7 HELIX 51 AF6 ARG A 1236 MET A 1241 1 6 HELIX 52 AF7 ARG A 1242 LEU A 1246 5 5 HELIX 53 AF8 ALA A 1250 PHE A 1264 1 15 HELIX 54 AF9 ALA A 1266 PHE A 1289 1 24 HELIX 55 AG1 THR A 1308 THR A 1321 1 14 HELIX 56 AG2 ALA A 1324 CYS A 1332 1 9 HELIX 57 AG3 ALA A 1357 ASN A 1383 1 27 HELIX 58 AG4 ASN A 1383 THR A 1388 1 6 SHEET 1 AA1 2 PHE A 955 CYS A 957 0 SHEET 2 AA1 2 TRP A 990 HIS A 992 -1 O ILE A 991 N SER A 956 SHEET 1 AA2 2 TYR A 971 TYR A 975 0 SHEET 2 AA2 2 MET A 983 PRO A 987 -1 O GLU A 984 N VAL A 974 SSBOND 1 CYS A 226 CYS A 254 1555 1555 2.20 SSBOND 2 CYS A 245 CYS A 261 1555 1555 2.26 SSBOND 3 CYS A 957 CYS A 968 1555 1555 1.84 SSBOND 4 CYS A 1338 CYS A 1352 1555 1555 2.12 CISPEP 1 ASP A 820 PRO A 821 0 -6.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000