HEADER MEMBRANE PROTEIN 05-JAN-18 6C1Q TITLE CRYSTAL STRUCTURE OF HUMAN C5A RECEPTOR IN COMPLEX WITH AN ORTHOSTERIC TITLE 2 ANTAGONIST PMX53 AND AN ALLOSTERIC ANTAGONIST NDT9513727 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE CYTOCHROME B562, C5A ANAPHYLATOXIN CHEMOTACTIC COMPND 3 RECEPTOR 1 CHIMERA; COMPND 4 CHAIN: B; COMPND 5 FRAGMENT: CYTOCHROME (UNP RESIDUES 23-127) + C5A RECEPTOR (UNP COMPND 6 RESIDUES 30-331); COMPND 7 SYNONYM: CYTOCHROME B-562,C5A ANAPHYLATOXIN CHEMOTACTIC RECEPTOR, COMPND 8 C5AR; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: PMX53; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 562, 9606; SOURCE 5 GENE: CYBC, C5AR1, C5AR, C5R1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS GPCR, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.LIU,L.WANG,Z.WEI,C.ZHANG REVDAT 3 08-JAN-20 6C1Q 1 REMARK REVDAT 2 20-JUN-18 6C1Q 1 JRNL REVDAT 1 30-MAY-18 6C1Q 0 JRNL AUTH H.LIU,H.R.KIM,R.N.V.K.DEEPAK,L.WANG,K.Y.CHUNG,H.FAN,Z.WEI, JRNL AUTH 2 C.ZHANG JRNL TITL ORTHOSTERIC AND ALLOSTERIC ACTION OF THE C5A RECEPTOR JRNL TITL 2 ANTAGONISTS. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 472 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 29867214 JRNL DOI 10.1038/S41594-018-0067-Z REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 3 NUMBER OF REFLECTIONS : 10108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4141 - 4.5994 0.93 2685 138 0.2281 0.2453 REMARK 3 2 4.5994 - 3.6529 0.93 2576 142 0.2225 0.2993 REMARK 3 3 3.6529 - 3.1918 0.85 2362 128 0.2796 0.3492 REMARK 3 4 3.1918 - 2.9002 0.72 1969 108 0.3479 0.4124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2991 REMARK 3 ANGLE : 0.779 4096 REMARK 3 CHIRALITY : 0.025 500 REMARK 3 PLANARITY : 0.003 497 REMARK 3 DIHEDRAL : 11.472 1006 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3217 26.3479 37.5163 REMARK 3 T TENSOR REMARK 3 T11: 0.8608 T22: 0.9776 REMARK 3 T33: 0.7026 T12: 0.0704 REMARK 3 T13: 0.0854 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 5.3588 L22: 4.8208 REMARK 3 L33: 5.8976 L12: 1.5032 REMARK 3 L13: -0.9467 L23: -0.2333 REMARK 3 S TENSOR REMARK 3 S11: -0.5116 S12: 0.2782 S13: -0.2805 REMARK 3 S21: -0.4098 S22: 0.2003 S23: -0.8618 REMARK 3 S31: 0.3709 S32: 1.5042 S33: 0.3780 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4744 24.0512 44.1528 REMARK 3 T TENSOR REMARK 3 T11: 0.6770 T22: 0.5542 REMARK 3 T33: 0.5579 T12: -0.0055 REMARK 3 T13: -0.1737 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 3.9991 L22: 5.9997 REMARK 3 L33: 4.3122 L12: -1.2820 REMARK 3 L13: -3.1853 L23: 2.3720 REMARK 3 S TENSOR REMARK 3 S11: -0.2838 S12: -0.4085 S13: -0.0314 REMARK 3 S21: 0.8059 S22: 0.0952 S23: 0.0845 REMARK 3 S31: 1.3320 S32: 0.4367 S33: 0.1886 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3840 27.1863 14.8736 REMARK 3 T TENSOR REMARK 3 T11: 1.4298 T22: 1.0928 REMARK 3 T33: 0.5354 T12: 0.0540 REMARK 3 T13: -0.0663 T23: -0.0985 REMARK 3 L TENSOR REMARK 3 L11: 8.5953 L22: 3.6009 REMARK 3 L33: 5.5648 L12: -0.9781 REMARK 3 L13: -6.5044 L23: 1.2420 REMARK 3 S TENSOR REMARK 3 S11: 0.9371 S12: 2.2353 S13: -0.8803 REMARK 3 S21: -0.0155 S22: -0.9109 S23: 0.2988 REMARK 3 S31: -0.7594 S32: -0.5804 S33: -0.1597 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6586 36.9496 43.3363 REMARK 3 T TENSOR REMARK 3 T11: 0.4314 T22: 0.4038 REMARK 3 T33: 0.4437 T12: 0.0148 REMARK 3 T13: -0.0085 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 6.6248 L22: 8.8324 REMARK 3 L33: 2.3427 L12: 0.4280 REMARK 3 L13: -1.3087 L23: 3.2759 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: -0.1952 S13: 0.0226 REMARK 3 S21: 0.6283 S22: -0.3554 S23: 0.4162 REMARK 3 S31: -0.5666 S32: -0.4400 S33: 0.5560 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4828 36.4777 39.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.8564 T22: 0.6401 REMARK 3 T33: 0.5621 T12: -0.1994 REMARK 3 T13: 0.0459 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 4.0767 L22: 5.4415 REMARK 3 L33: 2.0593 L12: -0.1704 REMARK 3 L13: -0.2068 L23: -0.9435 REMARK 3 S TENSOR REMARK 3 S11: -0.2690 S12: -0.0693 S13: 0.0338 REMARK 3 S21: -0.2897 S22: 0.2175 S23: -0.4947 REMARK 3 S31: -0.9182 S32: 0.9637 S33: 0.2315 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0813 44.3812 3.8554 REMARK 3 T TENSOR REMARK 3 T11: 1.7612 T22: 1.8277 REMARK 3 T33: 0.9312 T12: -0.4492 REMARK 3 T13: 0.3370 T23: 0.1181 REMARK 3 L TENSOR REMARK 3 L11: 2.1607 L22: 8.2343 REMARK 3 L33: 6.6036 L12: -1.6356 REMARK 3 L13: -0.2980 L23: -2.9238 REMARK 3 S TENSOR REMARK 3 S11: 1.1818 S12: -1.8120 S13: 0.3293 REMARK 3 S21: 0.8392 S22: -0.3378 S23: -0.2971 REMARK 3 S31: -1.5545 S32: 1.3491 S33: -0.9864 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8566 39.3837 -4.2344 REMARK 3 T TENSOR REMARK 3 T11: 1.9287 T22: 1.8199 REMARK 3 T33: 0.9902 T12: 0.1248 REMARK 3 T13: 0.3762 T23: 0.3204 REMARK 3 L TENSOR REMARK 3 L11: 4.8158 L22: 7.5771 REMARK 3 L33: 6.3380 L12: -0.8805 REMARK 3 L13: 2.9827 L23: 1.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.4082 S12: -0.9856 S13: -1.7115 REMARK 3 S21: -0.0877 S22: -0.0098 S23: -0.1948 REMARK 3 S31: 0.7865 S32: 2.4974 S33: -0.4066 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000231950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-35% PEG300, 100 MM MES, PH 6.5, 80 REMARK 280 -150 MM SODIUM MALONATE, 0.5% P400, 5 UM NDT, 5 UM PMX53, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.27900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PMX53 IS CYCLIC PEPTIDE, A MEMBER OF CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PMX53 REMARK 400 CHAIN: L REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 1 REMARK 465 TYR B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 ASP B 7 REMARK 465 VAL B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLN B 50 REMARK 465 LYS B 51 REMARK 465 ALA B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 PRO B 55 REMARK 465 LYS B 56 REMARK 465 LEU B 57 REMARK 465 GLU B 58 REMARK 465 ASP B 59 REMARK 465 LYS B 60 REMARK 465 SER B 61 REMARK 465 PRO B 62 REMARK 465 ASP B 63 REMARK 465 LEU B 115 REMARK 465 SER B 116 REMARK 465 ASN B 117 REMARK 465 ARG B 319 REMARK 465 ALA B 320 REMARK 465 THR B 321 REMARK 465 ARG B 322 REMARK 465 GLY B 395 REMARK 465 ARG B 396 REMARK 465 LEU B 397 REMARK 465 ARG B 398 REMARK 465 LYS B 399 REMARK 465 GLU B 411 REMARK 465 GLU B 412 REMARK 465 SER B 413 REMARK 465 VAL B 414 REMARK 465 VAL B 415 REMARK 465 ARG B 416 REMARK 465 GLU B 417 REMARK 465 ASN B 418 REMARK 465 LEU B 419 REMARK 465 TYR B 420 REMARK 465 PHE B 421 REMARK 465 GLN B 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 47 CG CD1 CD2 REMARK 470 SER B 64 OG REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 MET B 67 CG SD CE REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 PHE B 70 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ARG B 107 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 108 CG OD1 ND2 REMARK 470 TYR B 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 111 CG1 CG2 CD1 REMARK 470 GLN B 112 CG CD OE1 NE2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 TYR B 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 266 CG CD OE1 OE2 REMARK 470 TYR B 267 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 268 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 HIS B 280 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 318 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 GLN B 391 CG CD OE1 NE2 REMARK 470 PHE B 393 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 394 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 28 51.46 -113.71 REMARK 500 GLN B 184 31.64 -93.36 REMARK 500 ASP B 281 60.07 -153.68 REMARK 500 PHE B 297 -61.98 -140.78 REMARK 500 CYS B 380 -11.52 -141.99 REMARK 500 LEU B 409 33.72 -92.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9P2 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for PMX53 chain L DBREF 6C1Q B 10 115 UNP P0ABE7 C562_ECOLX 23 128 DBREF 6C1Q B 116 417 UNP P21730 C5AR1_HUMAN 30 331 DBREF 6C1Q L 0 6 PDB 6C1Q 6C1Q 0 6 SEQADV 6C1Q ASP B 1 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q TYR B 2 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q LYS B 3 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q ASP B 4 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q ASP B 5 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q ASP B 6 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q ASP B 7 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q VAL B 8 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q ASP B 9 UNP P0ABE7 EXPRESSION TAG SEQADV 6C1Q TRP B 16 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 6C1Q ILE B 111 UNP P0ABE7 HIS 124 ENGINEERED MUTATION SEQADV 6C1Q LEU B 115 UNP P0ABE7 ARG 128 ENGINEERED MUTATION SEQADV 6C1Q ASN B 418 UNP P21730 EXPRESSION TAG SEQADV 6C1Q LEU B 419 UNP P21730 EXPRESSION TAG SEQADV 6C1Q TYR B 420 UNP P21730 EXPRESSION TAG SEQADV 6C1Q PHE B 421 UNP P21730 EXPRESSION TAG SEQADV 6C1Q GLN B 422 UNP P21730 EXPRESSION TAG SEQRES 1 B 422 ASP TYR LYS ASP ASP ASP ASP VAL ASP ALA ASP LEU GLU SEQRES 2 B 422 ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL ILE SEQRES 3 B 422 GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA LEU SEQRES 4 B 422 THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS ALA SEQRES 5 B 422 THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER PRO SEQRES 6 B 422 GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU VAL SEQRES 7 B 422 GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU GLY SEQRES 8 B 422 LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU LYS SEQRES 9 B 422 THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU SER ASN SEQRES 10 B 422 THR LEU ARG VAL PRO ASP ILE LEU ALA LEU VAL ILE PHE SEQRES 11 B 422 ALA VAL VAL PHE LEU VAL GLY VAL LEU GLY ASN ALA LEU SEQRES 12 B 422 VAL VAL TRP VAL THR ALA PHE GLU ALA LYS ARG THR ILE SEQRES 13 B 422 ASN ALA ILE TRP PHE LEU ASN LEU ALA VAL ALA ASP PHE SEQRES 14 B 422 LEU SER CYS LEU ALA LEU PRO ILE LEU PHE THR SER ILE SEQRES 15 B 422 VAL GLN HIS HIS HIS TRP PRO PHE GLY GLY ALA ALA CYS SEQRES 16 B 422 SER ILE LEU PRO SER LEU ILE LEU LEU ASN MET TYR ALA SEQRES 17 B 422 SER ILE LEU LEU LEU ALA THR ILE SER ALA ASP ARG PHE SEQRES 18 B 422 LEU LEU VAL PHE LYS PRO ILE TRP YCM GLN ASN PHE ARG SEQRES 19 B 422 GLY ALA GLY LEU ALA TRP ILE ALA CYS ALA VAL ALA TRP SEQRES 20 B 422 GLY LEU ALA LEU LEU LEU THR ILE PRO SER PHE LEU TYR SEQRES 21 B 422 ARG VAL VAL ARG GLU GLU TYR PHE PRO PRO LYS VAL LEU SEQRES 22 B 422 CYS GLY VAL ASP TYR SER HIS ASP LYS ARG ARG GLU ARG SEQRES 23 B 422 ALA VAL ALA ILE VAL ARG LEU VAL LEU GLY PHE LEU TRP SEQRES 24 B 422 PRO LEU LEU THR LEU THR ILE CYS TYR THR PHE ILE LEU SEQRES 25 B 422 LEU ARG THR TRP SER ARG ARG ALA THR ARG SER THR LYS SEQRES 26 B 422 THR LEU LYS VAL VAL VAL ALA VAL VAL ALA SER PHE PHE SEQRES 27 B 422 ILE PHE TRP LEU PRO TYR GLN VAL THR GLY ILE MET MET SEQRES 28 B 422 SER PHE LEU GLU PRO SER SER PRO THR PHE LEU LEU LEU SEQRES 29 B 422 LYS LYS LEU ASP SER LEU CYS VAL SER PHE ALA TYR ILE SEQRES 30 B 422 ASN CYS CYS ILE ASN PRO ILE ILE TYR VAL VAL ALA GLY SEQRES 31 B 422 GLN GLY PHE GLN GLY ARG LEU ARG LYS SER LEU PRO SER SEQRES 32 B 422 LEU LEU ARG ASN VAL LEU THR GLU GLU SER VAL VAL ARG SEQRES 33 B 422 GLU ASN LEU TYR PHE GLN SEQRES 1 L 7 ACE PHE ORN PRO ZAL TRP ARG MODRES 6C1Q YCM B 230 CYS MODIFIED RESIDUE HET YCM B 230 10 HET ACE L 0 3 HET ORN L 2 8 HET ZAL L 4 11 HET 9P2 B 501 43 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM ACE ACETYL GROUP HETNAM ORN L-ORNITHINE HETNAM ZAL 3-CYCLOHEXYL-D-ALANINE HETNAM 9P2 1-(1,3-BENZODIOXOL-5-YL)-~{N}-(1,3-BENZODIOXOL-5- HETNAM 2 9P2 YLMETHYL)-~{N}-[(3-BUTYL-2,5-DIPHENYL-IMIDAZOL-4-YL) HETNAM 3 9P2 METHYL]METHANAMINE HETSYN YCM CYSTEINE-S-ACETAMIDE FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 2 ACE C2 H4 O FORMUL 2 ORN C5 H12 N2 O2 FORMUL 2 ZAL C9 H17 N O2 FORMUL 3 9P2 C36 H35 N3 O4 HELIX 1 AA1 ASP B 11 LYS B 28 1 18 HELIX 2 AA2 ASN B 31 ALA B 49 1 19 HELIX 3 AA3 PRO B 65 GLY B 91 1 27 HELIX 4 AA4 LYS B 92 TYR B 114 1 23 HELIX 5 AA5 ARG B 120 GLU B 151 1 32 HELIX 6 AA6 THR B 155 LEU B 173 1 19 HELIX 7 AA7 ALA B 174 GLN B 184 1 11 HELIX 8 AA8 GLY B 191 LEU B 198 1 8 HELIX 9 AA9 SER B 200 LYS B 226 1 27 HELIX 10 AB1 LYS B 226 PHE B 233 1 8 HELIX 11 AB2 GLY B 235 TYR B 260 1 26 HELIX 12 AB3 ASP B 281 PHE B 297 1 17 HELIX 13 AB4 PHE B 297 SER B 317 1 21 HELIX 14 AB5 THR B 324 PHE B 353 1 30 HELIX 15 AB6 SER B 358 ILE B 377 1 20 HELIX 16 AB7 ILE B 377 GLY B 392 1 16 HELIX 17 AB8 LEU B 401 LEU B 409 1 9 SHEET 1 AA1 3 ARG B 261 GLU B 266 0 SHEET 2 AA1 3 LYS B 271 VAL B 276 -1 O LEU B 273 N ARG B 264 SHEET 3 AA1 3 ORN L 2 PRO L 3 -1 O ORN L 2 N VAL B 276 SSBOND 1 CYS B 195 CYS B 274 1555 1555 2.03 LINK C TRP B 229 N YCM B 230 1555 1555 1.33 LINK C YCM B 230 N GLN B 231 1555 1555 1.33 LINK C ACE L 0 N PHE L 1 1555 1555 1.33 LINK C PHE L 1 N ORN L 2 1555 1555 1.33 LINK NE ORN L 2 C ARG L 6 1555 1555 1.33 LINK C ORN L 2 N PRO L 3 1555 1555 1.34 LINK C PRO L 3 N ZAL L 4 1555 1555 1.33 LINK C ZAL L 4 N TRP L 5 1555 1555 1.33 CISPEP 1 PHE B 268 PRO B 269 0 -1.43 SITE 1 AC1 10 ILE B 210 LEU B 211 ALA B 214 THR B 215 SITE 2 AC1 10 ALA B 242 VAL B 245 LEU B 295 TRP B 299 SITE 3 AC1 10 PRO B 300 THR B 303 SITE 1 AC2 15 LEU B 178 SER B 181 PRO B 199 ARG B 261 SITE 2 AC2 15 VAL B 262 ARG B 264 CYS B 274 GLY B 275 SITE 3 AC2 15 VAL B 276 SER B 279 TYR B 344 THR B 347 SITE 4 AC2 15 GLY B 348 ASP B 368 VAL B 372 CRYST1 62.369 52.558 84.503 90.00 107.75 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016034 0.000000 0.005131 0.00000 SCALE2 0.000000 0.019027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012425 0.00000