HEADER TRANSFERASE/TRANSFERASE INHIBITOR 05-JAN-18 6C1S TITLE PHOSPHOINOSITIDE 3-KINASE GAMMA BOUND TO AN PYRROLOPYRIDINONE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT GAMMA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PTDINS-3-KINASE SUBUNIT GAMMA,PHOSPHATIDYLINOSITOL 4,5- COMPND 6 BISPHOSPHATE 3-KINASE 110 KDA CATALYTIC SUBUNIT GAMMA,P110GAMMA, COMPND 7 PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, COMPND 8 SERINE/THREONINE PROTEIN KINASE PIK3CG,P120-PI3K; COMPND 9 EC: 2.7.1.153,2.7.11.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3CG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS KINASE, INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.JACOBS,J.P.GRIFFIN REVDAT 3 04-OCT-23 6C1S 1 REMARK REVDAT 2 11-JUL-18 6C1S 1 JRNL REVDAT 1 27-JUN-18 6C1S 0 JRNL AUTH J.H.COME,P.N.COLLIER,J.A.HENDERSON,A.C.PIERCE,R.J.DAVIES, JRNL AUTH 2 A.LE TIRAN,H.O'DOWD,U.K.BANDARAGE,J.CAO,D.DEININGER,R.GREY, JRNL AUTH 3 E.B.KRUEGER,D.B.LOWE,J.LIANG,Y.LIAO,D.MESSERSMITH, JRNL AUTH 4 S.NANTHAKUMAR,E.SIZENSKY,J.WANG,J.XU,E.Y.CHIN,V.DAMAGNEZ, JRNL AUTH 5 J.D.DORAN,W.DWORAKOWSKI,J.P.GRIFFITH,M.D.JACOBS, JRNL AUTH 6 S.KHARE-PANDIT,S.MAHAJAN,C.S.MOODY,A.M.ARONOV JRNL TITL DESIGN AND SYNTHESIS OF A NOVEL SERIES OF ORALLY JRNL TITL 2 BIOAVAILABLE, CNS-PENETRANT, ISOFORM SELECTIVE JRNL TITL 3 PHOSPHOINOSITIDE 3-KINASE GAMMA (PI3K GAMMA ) INHIBITORS JRNL TITL 4 WITH POTENTIAL FOR THE TREATMENT OF MULTIPLE SCLEROSIS (MS). JRNL REF J. MED. CHEM. V. 61 5245 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29847724 JRNL DOI 10.1021/ACS.JMEDCHEM.8B00085 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.4 REMARK 3 NUMBER OF REFLECTIONS : 33478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.09 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 161 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2831 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 146 REMARK 3 BIN R VALUE (WORKING SET) : 0.2779 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.32 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 15 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.41560 REMARK 3 B22 (A**2) : 0.11070 REMARK 3 B33 (A**2) : -2.52630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.78120 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.505 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.290 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.538 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.297 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6856 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9280 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2412 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 177 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 962 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6856 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 890 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7947 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.75 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 23.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|144 - A|1090 } REMARK 3 ORIGIN FOR THE GROUP (A): 35.0899 47.2102 27.5997 REMARK 3 T TENSOR REMARK 3 T11: -0.1529 T22: -0.3382 REMARK 3 T33: -0.3034 T12: 0.0225 REMARK 3 T13: 0.1073 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 4.9102 L22: 1.6218 REMARK 3 L33: 2.2611 L12: -1.3542 REMARK 3 L13: 1.2436 L23: -0.5084 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.1967 S13: -0.3622 REMARK 3 S21: 0.1166 S22: 0.1653 S23: 0.3355 REMARK 3 S31: -0.3920 S32: -0.0481 S33: -0.1663 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000229296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 62.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 54.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 7.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 4WWO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 200MM LITHIUM SULFATE, 10 REMARK 280 MM DTT, 10 MM EDTA, 100 MM TRIS, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.38000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.38000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 140 REMARK 465 PRO A 141 REMARK 465 MET A 142 REMARK 465 ALA A 143 REMARK 465 MET A 252 REMARK 465 ALA A 253 REMARK 465 LYS A 254 REMARK 465 LYS A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 MET A 259 REMARK 465 ASP A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 GLU A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 GLN A 268 REMARK 465 ASP A 269 REMARK 465 PHE A 270 REMARK 465 GLU A 322 REMARK 465 TRP A 323 REMARK 465 PRO A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 CYS A 329 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 TYR A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 HIS A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 VAL A 349 REMARK 465 PHE A 350 REMARK 465 THR A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 LEU A 354 REMARK 465 TRP A 355 REMARK 465 ASP A 356 REMARK 465 PRO A 374 REMARK 465 ARG A 375 REMARK 465 ASN A 376 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 PRO A 439 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 TYR A 523 REMARK 465 CYS A 524 REMARK 465 HIS A 525 REMARK 465 PRO A 526 REMARK 465 ILE A 527 REMARK 465 ALA A 528 REMARK 465 LEU A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 GLN A 533 REMARK 465 PRO A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 GLY A 540 REMARK 465 ASP A 541 REMARK 465 ARG A 542 REMARK 465 VAL A 543 REMARK 465 GLY A 900 REMARK 465 ALA A 901 REMARK 465 LEU A 969 REMARK 465 GLY A 970 REMARK 465 ASN A 971 REMARK 465 TYR A 972 REMARK 465 LYS A 973 REMARK 465 SER A 974 REMARK 465 PHE A 975 REMARK 465 LEU A 976 REMARK 465 GLY A 977 REMARK 465 ILE A 978 REMARK 465 ASN A 979 REMARK 465 GLN A 1041 REMARK 465 LEU A 1042 REMARK 465 VAL A 1091 REMARK 465 LEU A 1092 REMARK 465 GLY A 1093 REMARK 465 ILE A 1094 REMARK 465 LYS A 1095 REMARK 465 GLN A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 LYS A 1099 REMARK 465 HIS A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1102 REMARK 465 LEU A 1103 REMARK 465 GLU A 1104 REMARK 465 HIS A 1105 REMARK 465 HIS A 1106 REMARK 465 HIS A 1107 REMARK 465 HIS A 1108 REMARK 465 HIS A 1109 REMARK 465 HIS A 1110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 144 N REMARK 470 ASN A 217 CG OD1 ND2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 750 CG CD CE NZ REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 LYS A 903 CG CD CE NZ REMARK 470 LYS A 980 CG CD CE NZ REMARK 470 PHE A1087 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1088 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 199 60.74 35.93 REMARK 500 ARG A 226 109.35 -161.99 REMARK 500 SER A 227 -98.33 56.59 REMARK 500 LYS A 320 105.19 -58.06 REMARK 500 ASP A 378 92.38 -62.97 REMARK 500 LEU A 379 -167.62 -114.35 REMARK 500 PHE A 578 43.99 -103.76 REMARK 500 ARG A 613 42.29 -85.69 REMARK 500 ARG A 614 45.03 -91.08 REMARK 500 SER A 620 138.94 -32.29 REMARK 500 SER A 777 14.98 -153.20 REMARK 500 ALA A 805 49.71 -72.59 REMARK 500 LYS A 875 16.61 56.43 REMARK 500 GLU A 956 0.78 -60.44 REMARK 500 ASP A 964 81.64 48.97 REMARK 500 MET A1039 76.07 -111.39 REMARK 500 THR A1056 57.83 34.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1449 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1450 DISTANCE = 7.95 ANGSTROMS REMARK 525 HOH A1451 DISTANCE = 8.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFV A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1205 DBREF 6C1S A 144 1102 UNP P48736 PK3CG_HUMAN 144 1102 SEQADV 6C1S MET A 140 UNP P48736 EXPRESSION TAG SEQADV 6C1S PRO A 141 UNP P48736 EXPRESSION TAG SEQADV 6C1S MET A 142 UNP P48736 EXPRESSION TAG SEQADV 6C1S ALA A 143 UNP P48736 EXPRESSION TAG SEQADV 6C1S LEU A 1103 UNP P48736 EXPRESSION TAG SEQADV 6C1S GLU A 1104 UNP P48736 EXPRESSION TAG SEQADV 6C1S HIS A 1105 UNP P48736 EXPRESSION TAG SEQADV 6C1S HIS A 1106 UNP P48736 EXPRESSION TAG SEQADV 6C1S HIS A 1107 UNP P48736 EXPRESSION TAG SEQADV 6C1S HIS A 1108 UNP P48736 EXPRESSION TAG SEQADV 6C1S HIS A 1109 UNP P48736 EXPRESSION TAG SEQADV 6C1S HIS A 1110 UNP P48736 EXPRESSION TAG SEQRES 1 A 971 MET PRO MET ALA SER GLU GLU SER GLN ALA PHE GLN ARG SEQRES 2 A 971 GLN LEU THR ALA LEU ILE GLY TYR ASP VAL THR ASP VAL SEQRES 3 A 971 SER ASN VAL HIS ASP ASP GLU LEU GLU PHE THR ARG ARG SEQRES 4 A 971 GLY LEU VAL THR PRO ARG MET ALA GLU VAL ALA SER ARG SEQRES 5 A 971 ASP PRO LYS LEU TYR ALA MET HIS PRO TRP VAL THR SER SEQRES 6 A 971 LYS PRO LEU PRO GLU TYR LEU TRP LYS LYS ILE ALA ASN SEQRES 7 A 971 ASN CYS ILE PHE ILE VAL ILE HIS ARG SER THR THR SER SEQRES 8 A 971 GLN THR ILE LYS VAL SER PRO ASP ASP THR PRO GLY ALA SEQRES 9 A 971 ILE LEU GLN SER PHE PHE THR LYS MET ALA LYS LYS LYS SEQRES 10 A 971 SER LEU MET ASP ILE PRO GLU SER GLN SER GLU GLN ASP SEQRES 11 A 971 PHE VAL LEU ARG VAL CYS GLY ARG ASP GLU TYR LEU VAL SEQRES 12 A 971 GLY GLU THR PRO ILE LYS ASN PHE GLN TRP VAL ARG HIS SEQRES 13 A 971 CYS LEU LYS ASN GLY GLU GLU ILE HIS VAL VAL LEU ASP SEQRES 14 A 971 THR PRO PRO ASP PRO ALA LEU ASP GLU VAL ARG LYS GLU SEQRES 15 A 971 GLU TRP PRO LEU VAL ASP ASP CYS THR GLY VAL THR GLY SEQRES 16 A 971 TYR HIS GLU GLN LEU THR ILE HIS GLY LYS ASP HIS GLU SEQRES 17 A 971 SER VAL PHE THR VAL SER LEU TRP ASP CYS ASP ARG LYS SEQRES 18 A 971 PHE ARG VAL LYS ILE ARG GLY ILE ASP ILE PRO VAL LEU SEQRES 19 A 971 PRO ARG ASN THR ASP LEU THR VAL PHE VAL GLU ALA ASN SEQRES 20 A 971 ILE GLN HIS GLY GLN GLN VAL LEU CYS GLN ARG ARG THR SEQRES 21 A 971 SER PRO LYS PRO PHE THR GLU GLU VAL LEU TRP ASN VAL SEQRES 22 A 971 TRP LEU GLU PHE SER ILE LYS ILE LYS ASP LEU PRO LYS SEQRES 23 A 971 GLY ALA LEU LEU ASN LEU GLN ILE TYR CYS GLY LYS ALA SEQRES 24 A 971 PRO ALA LEU SER SER LYS ALA SER ALA GLU SER PRO SER SEQRES 25 A 971 SER GLU SER LYS GLY LYS VAL GLN LEU LEU TYR TYR VAL SEQRES 26 A 971 ASN LEU LEU LEU ILE ASP HIS ARG PHE LEU LEU ARG ARG SEQRES 27 A 971 GLY GLU TYR VAL LEU HIS MET TRP GLN ILE SER GLY LYS SEQRES 28 A 971 GLY GLU ASP GLN GLY SER PHE ASN ALA ASP LYS LEU THR SEQRES 29 A 971 SER ALA THR ASN PRO ASP LYS GLU ASN SER MET SER ILE SEQRES 30 A 971 SER ILE LEU LEU ASP ASN TYR CYS HIS PRO ILE ALA LEU SEQRES 31 A 971 PRO LYS HIS GLN PRO THR PRO ASP PRO GLU GLY ASP ARG SEQRES 32 A 971 VAL ARG ALA GLU MET PRO ASN GLN LEU ARG LYS GLN LEU SEQRES 33 A 971 GLU ALA ILE ILE ALA THR ASP PRO LEU ASN PRO LEU THR SEQRES 34 A 971 ALA GLU ASP LYS GLU LEU LEU TRP HIS PHE ARG TYR GLU SEQRES 35 A 971 SER LEU LYS HIS PRO LYS ALA TYR PRO LYS LEU PHE SER SEQRES 36 A 971 SER VAL LYS TRP GLY GLN GLN GLU ILE VAL ALA LYS THR SEQRES 37 A 971 TYR GLN LEU LEU ALA ARG ARG GLU VAL TRP ASP GLN SER SEQRES 38 A 971 ALA LEU ASP VAL GLY LEU THR MET GLN LEU LEU ASP CYS SEQRES 39 A 971 ASN PHE SER ASP GLU ASN VAL ARG ALA ILE ALA VAL GLN SEQRES 40 A 971 LYS LEU GLU SER LEU GLU ASP ASP ASP VAL LEU HIS TYR SEQRES 41 A 971 LEU LEU GLN LEU VAL GLN ALA VAL LYS PHE GLU PRO TYR SEQRES 42 A 971 HIS ASP SER ALA LEU ALA ARG PHE LEU LEU LYS ARG GLY SEQRES 43 A 971 LEU ARG ASN LYS ARG ILE GLY HIS PHE LEU PHE TRP PHE SEQRES 44 A 971 LEU ARG SER GLU ILE ALA GLN SER ARG HIS TYR GLN GLN SEQRES 45 A 971 ARG PHE ALA VAL ILE LEU GLU ALA TYR LEU ARG GLY CYS SEQRES 46 A 971 GLY THR ALA MET LEU HIS ASP PHE THR GLN GLN VAL GLN SEQRES 47 A 971 VAL ILE GLU MET LEU GLN LYS VAL THR LEU ASP ILE LYS SEQRES 48 A 971 SER LEU SER ALA GLU LYS TYR ASP VAL SER SER GLN VAL SEQRES 49 A 971 ILE SER GLN LEU LYS GLN LYS LEU GLU ASN LEU GLN ASN SEQRES 50 A 971 SER GLN LEU PRO GLU SER PHE ARG VAL PRO TYR ASP PRO SEQRES 51 A 971 GLY LEU LYS ALA GLY ALA LEU ALA ILE GLU LYS CYS LYS SEQRES 52 A 971 VAL MET ALA SER LYS LYS LYS PRO LEU TRP LEU GLU PHE SEQRES 53 A 971 LYS CYS ALA ASP PRO THR ALA LEU SER ASN GLU THR ILE SEQRES 54 A 971 GLY ILE ILE PHE LYS HIS GLY ASP ASP LEU ARG GLN ASP SEQRES 55 A 971 MET LEU ILE LEU GLN ILE LEU ARG ILE MET GLU SER ILE SEQRES 56 A 971 TRP GLU THR GLU SER LEU ASP LEU CYS LEU LEU PRO TYR SEQRES 57 A 971 GLY CYS ILE SER THR GLY ASP LYS ILE GLY MET ILE GLU SEQRES 58 A 971 ILE VAL LYS ASP ALA THR THR ILE ALA LYS ILE GLN GLN SEQRES 59 A 971 SER THR VAL GLY ASN THR GLY ALA PHE LYS ASP GLU VAL SEQRES 60 A 971 LEU ASN HIS TRP LEU LYS GLU LYS SER PRO THR GLU GLU SEQRES 61 A 971 LYS PHE GLN ALA ALA VAL GLU ARG PHE VAL TYR SER CYS SEQRES 62 A 971 ALA GLY TYR CYS VAL ALA THR PHE VAL LEU GLY ILE GLY SEQRES 63 A 971 ASP ARG HIS ASN ASP ASN ILE MET ILE THR GLU THR GLY SEQRES 64 A 971 ASN LEU PHE HIS ILE ASP PHE GLY HIS ILE LEU GLY ASN SEQRES 65 A 971 TYR LYS SER PHE LEU GLY ILE ASN LYS GLU ARG VAL PRO SEQRES 66 A 971 PHE VAL LEU THR PRO ASP PHE LEU PHE VAL MET GLY THR SEQRES 67 A 971 SER GLY LYS LYS THR SER PRO HIS PHE GLN LYS PHE GLN SEQRES 68 A 971 ASP ILE CYS VAL LYS ALA TYR LEU ALA LEU ARG HIS HIS SEQRES 69 A 971 THR ASN LEU LEU ILE ILE LEU PHE SER MET MET LEU MET SEQRES 70 A 971 THR GLY MET PRO GLN LEU THR SER LYS GLU ASP ILE GLU SEQRES 71 A 971 TYR ILE ARG ASP ALA LEU THR VAL GLY LYS ASN GLU GLU SEQRES 72 A 971 ASP ALA LYS LYS TYR PHE LEU ASP GLN ILE GLU VAL CYS SEQRES 73 A 971 ARG ASP LYS GLY TRP THR VAL GLN PHE ASN TRP PHE LEU SEQRES 74 A 971 HIS LEU VAL LEU GLY ILE LYS GLN GLY GLU LYS HIS SER SEQRES 75 A 971 ALA LEU GLU HIS HIS HIS HIS HIS HIS HET EFV A1201 28 HET SO4 A1202 5 HET SO4 A1203 5 HET SO4 A1204 5 HET SO4 A1205 5 HETNAM EFV {4-[2-(5,6-DIMETHOXYPYRIDIN-3-YL)-5-OXO-5,7-DIHYDRO-6H- HETNAM 2 EFV PYRROLO[3,4-B]PYRIDIN-6-YL]-1H-PYRAZOL-1- HETNAM 3 EFV YL}ACETONITRILE HETNAM SO4 SULFATE ION FORMUL 2 EFV C19 H16 N6 O3 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *151(H2 O) HELIX 1 AA1 GLU A 145 GLY A 159 1 15 HELIX 2 AA2 ASP A 171 LEU A 180 1 10 HELIX 3 AA3 LEU A 180 ARG A 191 1 12 HELIX 4 AA4 ASP A 192 HIS A 199 1 8 HELIX 5 AA5 PRO A 208 LYS A 214 1 7 HELIX 6 AA6 THR A 240 LYS A 251 1 12 HELIX 7 AA7 PRO A 286 ASN A 289 5 4 HELIX 8 AA8 PHE A 290 GLY A 300 1 11 HELIX 9 AA9 ASP A 312 ASP A 316 5 5 HELIX 10 AB1 ALA A 499 THR A 503 5 5 HELIX 11 AB2 PRO A 548 ALA A 560 1 13 HELIX 12 AB3 THR A 568 PHE A 578 1 11 HELIX 13 AB4 PHE A 578 LYS A 584 1 7 HELIX 14 AB5 HIS A 585 LYS A 587 5 3 HELIX 15 AB6 ALA A 588 SER A 595 1 8 HELIX 16 AB7 GLN A 600 ARG A 613 1 14 HELIX 17 AB8 ARG A 614 SER A 620 1 7 HELIX 18 AB9 ASP A 623 LEU A 630 1 8 HELIX 19 AC1 ASP A 637 GLU A 649 1 13 HELIX 20 AC2 GLU A 652 ALA A 666 1 15 HELIX 21 AC3 VAL A 667 GLU A 670 5 4 HELIX 22 AC4 SER A 675 ASN A 688 1 14 HELIX 23 AC5 ASN A 688 SER A 706 1 19 HELIX 24 AC6 TYR A 709 ARG A 722 1 14 HELIX 25 AC7 GLY A 725 SER A 753 1 29 HELIX 26 AC8 SER A 760 ASN A 776 1 17 HELIX 27 AC9 ILE A 798 CYS A 801 5 4 HELIX 28 AD1 LEU A 838 THR A 857 1 20 HELIX 29 AD2 ILE A 888 THR A 895 1 8 HELIX 30 AD3 GLU A 905 SER A 915 1 11 HELIX 31 AD4 THR A 917 GLY A 943 1 27 HELIX 32 AD5 HIS A 948 ASP A 950 5 3 HELIX 33 AD6 THR A 988 MET A 995 1 8 HELIX 34 AD7 SER A 1003 HIS A 1022 1 20 HELIX 35 AD8 HIS A 1023 MET A 1039 1 17 HELIX 36 AD9 SER A 1044 GLU A 1049 1 6 HELIX 37 AE1 GLU A 1049 LEU A 1055 1 7 HELIX 38 AE2 ASN A 1060 GLY A 1079 1 20 HELIX 39 AE3 TRP A 1080 LEU A 1088 1 9 SHEET 1 AA1 4 THR A 229 VAL A 235 0 SHEET 2 AA1 4 ILE A 220 ARG A 226 -1 N ILE A 220 O VAL A 235 SHEET 3 AA1 4 ILE A 303 LEU A 307 1 O LEU A 307 N HIS A 225 SHEET 4 AA1 4 LEU A 272 VAL A 274 -1 N ARG A 273 O VAL A 306 SHEET 1 AA2 4 GLU A 407 LYS A 419 0 SHEET 2 AA2 4 LYS A 360 ASP A 369 -1 N PHE A 361 O ILE A 418 SHEET 3 AA2 4 SER A 515 LEU A 520 -1 O SER A 517 N ARG A 366 SHEET 4 AA2 4 GLY A 478 HIS A 483 -1 N GLY A 478 O LEU A 520 SHEET 1 AA3 3 GLN A 392 ARG A 398 0 SHEET 2 AA3 3 THR A 380 HIS A 389 -1 N ALA A 385 O ARG A 397 SHEET 3 AA3 3 LYS A 402 PRO A 403 -1 O LYS A 402 N VAL A 381 SHEET 1 AA4 5 GLN A 392 ARG A 398 0 SHEET 2 AA4 5 THR A 380 HIS A 389 -1 N ALA A 385 O ARG A 397 SHEET 3 AA4 5 LEU A 428 TYR A 434 -1 O GLN A 432 N GLU A 384 SHEET 4 AA4 5 LEU A 460 LEU A 467 -1 O VAL A 464 N LEU A 431 SHEET 5 AA4 5 TRP A 485 GLN A 486 -1 O TRP A 485 N TYR A 463 SHEET 1 AA5 4 PHE A 783 VAL A 785 0 SHEET 2 AA5 4 ASP A 788 LEU A 796 -1 O LEU A 791 N VAL A 785 SHEET 3 AA5 4 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 AA5 4 LYS A 802 VAL A 803 -1 N LYS A 802 O TRP A 812 SHEET 1 AA6 6 PHE A 783 VAL A 785 0 SHEET 2 AA6 6 ASP A 788 LEU A 796 -1 O LEU A 791 N VAL A 785 SHEET 3 AA6 6 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 AA6 6 ILE A 828 HIS A 834 -1 O ILE A 828 N PHE A 815 SHEET 5 AA6 6 ILE A 876 GLU A 880 -1 O ILE A 879 N ILE A 831 SHEET 6 AA6 6 CYS A 869 GLY A 873 -1 N ILE A 870 O MET A 878 SHEET 1 AA7 3 ALA A 885 THR A 887 0 SHEET 2 AA7 3 ILE A 952 THR A 955 -1 O ILE A 954 N THR A 886 SHEET 3 AA7 3 LEU A 960 HIS A 962 -1 O PHE A 961 N MET A 953 SITE 1 AC1 16 TRP A 812 ILE A 831 LYS A 833 ASP A 836 SITE 2 AC1 16 ASP A 841 TYR A 867 ILE A 879 GLU A 880 SITE 3 AC1 16 ILE A 881 VAL A 882 LYS A 883 ALA A 885 SITE 4 AC1 16 MET A 953 ILE A 963 ASP A 964 HOH A1308 SITE 1 AC2 6 PRO A 206 LEU A 207 TRP A 212 LYS A 288 SITE 2 AC2 6 LYS A1066 HOH A1373 SITE 1 AC3 6 ASP A 946 ARG A 947 HIS A 948 ASN A 951 SITE 2 AC3 6 ILE A 968 TRP A1086 SITE 1 AC4 6 ALA A 545 GLU A 546 TRP A 576 ARG A 579 SITE 2 AC4 6 LYS A 606 HOH A1305 SITE 1 AC5 4 LEU A 657 PHE A 694 PHE A 698 GLN A 846 CRYST1 144.760 67.550 107.530 90.00 95.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006908 0.000000 0.000669 0.00000 SCALE2 0.000000 0.014804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009343 0.00000