HEADER LIGASE 06-JAN-18 6C25 TITLE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM LEGIONELLA TITLE 2 PNEUMOPHILA PHILADELPHIA 1 IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADSS,IMP--ASPARTATE LIGASE; COMPND 5 EC: 6.3.4.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 ATCC: 33152; SOURCE 5 GENE: PURA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: LEPNA.00888.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 6C25 1 REMARK REVDAT 1 14-MAR-18 6C25 0 JRNL AUTH J.ABENDROTH,D.G.CONRADY,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM JRNL TITL 2 LEGIONELLA PNEUMOPHILA PHILADELPHIA 1 IN COMPLEX WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.650 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4439 - 4.5775 1.00 2172 137 0.1767 0.2107 REMARK 3 2 4.5775 - 3.6340 1.00 2079 132 0.1427 0.1663 REMARK 3 3 3.6340 - 3.1749 1.00 2018 152 0.1559 0.2002 REMARK 3 4 3.1749 - 2.8847 1.00 2026 136 0.1745 0.1969 REMARK 3 5 2.8847 - 2.6780 1.00 2017 138 0.1857 0.2365 REMARK 3 6 2.6780 - 2.5201 1.00 2009 130 0.1830 0.2282 REMARK 3 7 2.5201 - 2.3939 1.00 1985 151 0.1838 0.2339 REMARK 3 8 2.3939 - 2.2897 1.00 1972 151 0.1777 0.2389 REMARK 3 9 2.2897 - 2.2016 1.00 2011 138 0.1796 0.2166 REMARK 3 10 2.2016 - 2.1256 1.00 1986 127 0.1806 0.2343 REMARK 3 11 2.1256 - 2.0591 1.00 1966 159 0.1913 0.2500 REMARK 3 12 2.0591 - 2.0003 1.00 1963 145 0.2049 0.2570 REMARK 3 13 2.0003 - 1.9476 1.00 1957 153 0.2191 0.2527 REMARK 3 14 1.9476 - 1.9001 0.99 1939 153 0.2427 0.2777 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4985 22.9671 -13.2686 REMARK 3 T TENSOR REMARK 3 T11: 0.1676 T22: 0.1277 REMARK 3 T33: 0.1659 T12: 0.0010 REMARK 3 T13: 0.0115 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.4639 L22: 3.1240 REMARK 3 L33: 1.0104 L12: 0.1395 REMARK 3 L13: -0.2855 L23: -0.5808 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.1581 S13: 0.2655 REMARK 3 S21: -0.1764 S22: 0.0803 S23: 0.0437 REMARK 3 S31: -0.1407 S32: -0.0380 S33: -0.1008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1694 24.9698 -5.6395 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1326 REMARK 3 T33: 0.1732 T12: 0.0203 REMARK 3 T13: 0.0424 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.2175 L22: 3.5562 REMARK 3 L33: 2.0423 L12: 0.2670 REMARK 3 L13: -0.0516 L23: -0.1153 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: -0.0498 S13: 0.4081 REMARK 3 S21: 0.0033 S22: 0.0456 S23: 0.1580 REMARK 3 S31: -0.0632 S32: 0.0197 S33: 0.0144 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7924 12.4354 -11.6961 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.1419 REMARK 3 T33: 0.1576 T12: -0.0112 REMARK 3 T13: 0.0082 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.7635 L22: 4.9987 REMARK 3 L33: 0.4113 L12: -1.6707 REMARK 3 L13: -0.8113 L23: 1.2937 REMARK 3 S TENSOR REMARK 3 S11: 0.0877 S12: 0.0593 S13: 0.2038 REMARK 3 S21: -0.1781 S22: 0.0339 S23: -0.4083 REMARK 3 S31: -0.0541 S32: 0.0799 S33: -0.1186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1233 2.8662 -27.0507 REMARK 3 T TENSOR REMARK 3 T11: 0.2730 T22: 0.2918 REMARK 3 T33: 0.2463 T12: 0.0463 REMARK 3 T13: 0.1211 T23: 0.0980 REMARK 3 L TENSOR REMARK 3 L11: 3.3998 L22: 1.7519 REMARK 3 L33: 2.9264 L12: -1.5514 REMARK 3 L13: -1.6794 L23: 0.8917 REMARK 3 S TENSOR REMARK 3 S11: 0.4957 S12: 0.6915 S13: 0.4518 REMARK 3 S21: -0.4023 S22: -0.1896 S23: -0.4998 REMARK 3 S31: -0.4898 S32: -0.1939 S33: 0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.435 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.835 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.73 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NATIVE STRUCTURE, PDB ENTRY 6BS7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS MORPHEUS SCREEN REMARK 280 B4: 12.5% W/V PEG 1000, 12.5% W/V PEG 3350, 12.5% V/V MPD: 30MM REMARK 280 OF EACH NAF, NABR, NAI: 100MM MES/IMIDAZOLE PH 6.5: REMARK 280 LEPNA.00888.A.B1.PW38319 AT 18.4MG/ML + 2MM MGCL2 + 2MM GDP: REMARK 280 CRYO: DIRECT: TRAY 297195 B4: PUCK ESB5-10, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.40500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.40500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -68.81000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 47 REMARK 465 GLY A 48 REMARK 465 VAL A 49 REMARK 465 LYS A 50 REMARK 465 MET A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 SER A 125 REMARK 465 ALA A 126 REMARK 465 ILE A 127 REMARK 465 GLY A 128 REMARK 465 THR A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 VAL A 227 REMARK 465 TYR A 228 REMARK 465 LEU A 229 REMARK 465 ASP A 230 REMARK 465 ILE A 231 REMARK 465 ASP A 232 REMARK 465 HIS A 233 REMARK 465 GLY A 234 REMARK 465 THR A 235 REMARK 465 TYR A 236 REMARK 465 PRO A 237 REMARK 465 TYR A 238 REMARK 465 VAL A 239 REMARK 465 THR A 240 REMARK 465 SER A 241 REMARK 465 SER A 242 REMARK 465 ASN A 243 REMARK 465 THR A 244 REMARK 465 CYS A 245 REMARK 465 VAL A 246 REMARK 465 GLY A 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 ASN A 39 CG OD1 ND2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 93 CG OD1 ND2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 HIS A 121 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 PHE A 171 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 177 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 ARG A 351 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 367 CG OD1 ND2 REMARK 470 ASP A 368 CG OD1 OD2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 11 -125.70 -120.40 REMARK 500 LEU A 44 -158.17 -152.25 REMARK 500 ASP A 285 -162.72 -122.40 REMARK 500 SER A 324 56.12 39.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 500 O1A REMARK 620 2 HOH A 757 O 73.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEPNA.00888.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 6BS7 RELATED DB: PDB REMARK 900 APO STRUCTURE DBREF 6C25 A 1 431 UNP Q8RNM2 PURA_LEGPN 1 431 SEQADV 6C25 MET A -7 UNP Q8RNM2 INITIATING METHIONINE SEQADV 6C25 ALA A -6 UNP Q8RNM2 EXPRESSION TAG SEQADV 6C25 HIS A -5 UNP Q8RNM2 EXPRESSION TAG SEQADV 6C25 HIS A -4 UNP Q8RNM2 EXPRESSION TAG SEQADV 6C25 HIS A -3 UNP Q8RNM2 EXPRESSION TAG SEQADV 6C25 HIS A -2 UNP Q8RNM2 EXPRESSION TAG SEQADV 6C25 HIS A -1 UNP Q8RNM2 EXPRESSION TAG SEQADV 6C25 HIS A 0 UNP Q8RNM2 EXPRESSION TAG SEQRES 1 A 439 MET ALA HIS HIS HIS HIS HIS HIS MET GLY LYS ASN VAL SEQRES 2 A 439 VAL VAL LEU GLY THR GLN TRP GLY ASP GLU GLY LYS GLY SEQRES 3 A 439 LYS ILE VAL ASP LEU LEU THR GLN ASP ALA GLN VAL VAL SEQRES 4 A 439 VAL ARG TYR GLN GLY GLY HIS ASN ALA GLY HIS THR LEU SEQRES 5 A 439 LYS ILE ASN GLY VAL LYS THR VAL LEU ARG LEU ILE PRO SEQRES 6 A 439 SER GLY MET LEU ARG PRO ASN VAL THR CYS TYR ILE ALA SEQRES 7 A 439 ASN GLY VAL VAL LEU SER PRO GLN ALA LEU LEU SER GLU SEQRES 8 A 439 ILE LYS GLU LEU GLU GLY ASN GLY ILE ASN VAL ARG GLU SEQRES 9 A 439 ARG LEU ARG ILE SER LEU ALA CYS PRO LEU ILE LEU PRO SEQRES 10 A 439 TYR HIS ILE ALA LEU ASP LYS ALA ARG GLU THR HIS MET SEQRES 11 A 439 GLY LYS SER ALA ILE GLY THR THR GLY ARG GLY ILE GLY SEQRES 12 A 439 PRO ALA TYR GLU ASP LYS VAL ALA ARG ARG ALA LEU ARG SEQRES 13 A 439 VAL GLY ASP LEU PHE HIS ARG ASP ARG PHE ALA ASN LYS SEQRES 14 A 439 LEU THR GLU LEU LEU ASP TYR HIS ASN PHE VAL LEU THR SEQRES 15 A 439 GLN TYR PHE LYS GLN PRO ALA VAL ASP LEU GLU SER LEU SEQRES 16 A 439 LEU GLY GLU SER LEU GLN TRP ALA GLU GLU LEU ARG PRO SEQRES 17 A 439 MET VAL CYS ASP VAL SER ALA CYS LEU HIS GLU HIS ARG SEQRES 18 A 439 LYS GLN GLY GLU ASN ILE LEU PHE GLU GLY ALA GLN GLY SEQRES 19 A 439 VAL TYR LEU ASP ILE ASP HIS GLY THR TYR PRO TYR VAL SEQRES 20 A 439 THR SER SER ASN THR CYS VAL GLY SER VAL ILE ASN GLY SEQRES 21 A 439 ALA GLY PHE GLY PRO ARG TYR ILE ASP TYR VAL LEU GLY SEQRES 22 A 439 ILE THR LYS ALA TYR THR THR ARG VAL GLY GLY GLY PRO SEQRES 23 A 439 PHE PRO THR GLU LEU LEU ASP ASP VAL GLY LYS ARG ILE SEQRES 24 A 439 ALA GLU ARG GLY GLN GLU PHE GLY ALA VAL THR GLY ARG SEQRES 25 A 439 PRO ARG ARG CYS GLY TRP PHE ASP ALA VAL LEU LEU LYS SEQRES 26 A 439 ARG SER ILE GLU LEU ASN SER ILE SER GLY LEU CYS VAL SEQRES 27 A 439 THR LYS LEU ASP VAL LEU ASP GLY LEU GLU VAL LEU ARG SEQRES 28 A 439 ILE ALA VAL ALA TYR LYS ASP ARG ASP GLY ASN ILE LEU SEQRES 29 A 439 SER ARG PRO PRO LEU ALA ALA ASP ASP PHE ASN ASP LEU SEQRES 30 A 439 LEU PRO VAL TYR GLU GLU LEU PRO GLY TRP GLN GLU SER SEQRES 31 A 439 THR ALA ASP VAL THR VAL MET SER ASP LEU PRO ALA ASN SEQRES 32 A 439 ALA ARG ALA TYR LEU LYS ARG ILE GLU GLU ILE LEU GLY SEQRES 33 A 439 ILE PRO ILE ASP MET LEU SER THR GLY PRO GLU ARG ASP SEQRES 34 A 439 SER THR ILE THR LEU ARG GLY PRO PHE LEU HET GDP A 500 28 HET MG A 501 1 HET CL A 502 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 HOH *213(H2 O) HELIX 1 AA1 GLY A 16 THR A 25 1 10 HELIX 2 AA2 PRO A 57 ARG A 62 5 6 HELIX 3 AA3 SER A 76 ASN A 90 1 15 HELIX 4 AA4 ASN A 93 ARG A 97 1 5 HELIX 5 AA5 LEU A 108 THR A 120 1 13 HELIX 6 AA6 GLY A 133 ALA A 143 1 11 HELIX 7 AA7 ARG A 148 PHE A 153 5 6 HELIX 8 AA8 HIS A 154 GLN A 175 1 22 HELIX 9 AA9 ASP A 183 SER A 191 1 9 HELIX 10 AB1 GLN A 193 ARG A 199 1 7 HELIX 11 AB2 ASP A 204 GLN A 215 1 12 HELIX 12 AB3 VAL A 249 GLY A 254 1 6 HELIX 13 AB4 GLY A 256 ILE A 260 5 5 HELIX 14 AB5 ASP A 285 GLY A 295 1 11 HELIX 15 AB6 ALA A 313 SER A 324 1 12 HELIX 16 AB7 LYS A 332 ASP A 337 5 6 HELIX 17 AB8 ALA A 362 ASN A 367 5 6 HELIX 18 AB9 VAL A 388 LEU A 392 5 5 HELIX 19 AC1 PRO A 393 GLY A 408 1 16 SHEET 1 AA110 VAL A 202 CYS A 203 0 SHEET 2 AA110 LEU A 98 SER A 101 1 N ILE A 100 O CYS A 203 SHEET 3 AA110 THR A 66 ILE A 69 1 N ILE A 69 O ARG A 99 SHEET 4 AA110 VAL A 30 ARG A 33 1 N ARG A 33 O TYR A 68 SHEET 5 AA110 ILE A 219 GLU A 222 1 O GLU A 222 N VAL A 32 SHEET 6 AA110 ASN A 4 GLY A 9 1 N VAL A 5 O PHE A 221 SHEET 7 AA110 TYR A 262 LYS A 268 1 O ILE A 266 N LEU A 8 SHEET 8 AA110 GLY A 327 THR A 331 1 O CYS A 329 N THR A 267 SHEET 9 AA110 ILE A 411 SER A 415 1 O SER A 415 N VAL A 330 SHEET 10 AA110 THR A 423 THR A 425 -1 O ILE A 424 N LEU A 414 SHEET 1 AA2 2 HIS A 42 THR A 43 0 SHEET 2 AA2 2 VAL A 52 LEU A 53 -1 O LEU A 53 N HIS A 42 SHEET 1 AA3 2 THR A 271 ARG A 273 0 SHEET 2 AA3 2 ARG A 307 GLY A 309 -1 O ARG A 307 N ARG A 273 SHEET 1 AA4 3 PHE A 311 ASP A 312 0 SHEET 2 AA4 3 VAL A 341 LYS A 349 1 O ALA A 345 N PHE A 311 SHEET 3 AA4 3 ILE A 355 LEU A 356 -1 O LEU A 356 N TYR A 348 SHEET 1 AA5 3 PHE A 311 ASP A 312 0 SHEET 2 AA5 3 VAL A 341 LYS A 349 1 O ALA A 345 N PHE A 311 SHEET 3 AA5 3 LEU A 370 PRO A 377 -1 O LEU A 376 N LEU A 342 LINK O1A GDP A 500 MG MG A 501 1555 1555 2.35 LINK MG MG A 501 O HOH A 757 1555 1555 2.96 SITE 1 AC1 22 GLY A 16 LYS A 17 GLY A 18 LYS A 19 SITE 2 AC1 22 HIS A 42 THR A 43 LYS A 332 ASP A 334 SITE 3 AC1 22 SER A 415 GLY A 417 PRO A 418 MG A 501 SITE 4 AC1 22 HOH A 632 HOH A 650 HOH A 654 HOH A 667 SITE 5 AC1 22 HOH A 675 HOH A 682 HOH A 709 HOH A 713 SITE 6 AC1 22 HOH A 718 HOH A 757 SITE 1 AC2 4 GLY A 16 LYS A 17 GDP A 500 HOH A 757 SITE 1 AC3 4 SER A 101 VAL A 205 SER A 206 HOH A 746 CRYST1 68.810 90.260 60.010 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016664 0.00000