data_6C27 # _entry.id 6C27 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6C27 pdb_00006c27 10.2210/pdb6c27/pdb WWPDB D_1000231963 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-09 2 'Structure model' 1 1 2019-02-20 3 'Structure model' 1 2 2022-03-23 4 'Structure model' 1 3 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 3 'Structure model' '_pdbx_audit_support.grant_number' 6 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 7 4 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id' 8 4 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id' 9 4 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id' 10 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 11 4 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id' 12 4 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id' 13 4 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6C27 _pdbx_database_status.recvd_initial_deposition_date 2018-01-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Grigg, J.C.' 1 ? 'Price, I.R.' 2 ? 'Ke, A.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Evidence for two-tiered conformation selection in the SAM-III riboswitch' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Price, I.R.' 1 ? primary 'Grigg, J.C.' 2 ? primary 'Martell, D.J.' 3 ? primary 'Ding, F.' 4 ? primary 'Peng, C.' 5 ? primary 'Ke, A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SAM-III riboswitch' 15354.081 2 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GTP)GGACAAGUUCCCGAAAGGAUGGCGGAAACGCCAGAUGCCUUGUCCC' _entity_poly.pdbx_seq_one_letter_code_can GGGACAAGUUCCCGAAAGGAUGGCGGAAACGCCAGAUGCCUUGUCCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'COBALT HEXAMMINE(III)' _pdbx_entity_nonpoly.comp_id NCO # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 G n 1 4 A n 1 5 C n 1 6 A n 1 7 A n 1 8 G n 1 9 U n 1 10 U n 1 11 C n 1 12 C n 1 13 C n 1 14 G n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 A n 1 21 U n 1 22 G n 1 23 G n 1 24 C n 1 25 G n 1 26 G n 1 27 A n 1 28 A n 1 29 A n 1 30 C n 1 31 G n 1 32 C n 1 33 C n 1 34 A n 1 35 G n 1 36 A n 1 37 U n 1 38 G n 1 39 C n 1 40 C n 1 41 U n 1 42 U n 1 43 G n 1 44 U n 1 45 C n 1 46 C n 1 47 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Enterococcus faecalis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1351 _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription from a modified pUC19 vector with T7 RNA polymerase' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 U 10 10 10 U U A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 U 21 21 21 U U A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 U 37 37 37 U U A . n A 1 38 G 38 38 38 G G A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 U 41 41 41 U U A . n A 1 42 U 42 42 42 U U A . n A 1 43 G 43 43 43 G G A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 C 46 46 46 C C A . n A 1 47 C 47 47 47 C C A . n B 1 1 GTP 1 1 1 GTP GTP B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 A 4 4 4 A A B . n B 1 5 C 5 5 5 C C B . n B 1 6 A 6 6 6 A A B . n B 1 7 A 7 7 7 A A B . n B 1 8 G 8 8 8 G G B . n B 1 9 U 9 9 9 U U B . n B 1 10 U 10 10 10 U U B . n B 1 11 C 11 11 11 C C B . n B 1 12 C 12 12 12 C C B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 A 15 15 15 A A B . n B 1 16 A 16 16 16 A A B . n B 1 17 A 17 17 17 A A B . n B 1 18 G 18 18 18 G G B . n B 1 19 G 19 19 19 G G B . n B 1 20 A 20 20 20 A A B . n B 1 21 U 21 21 21 U U B . n B 1 22 G 22 22 22 G G B . n B 1 23 G 23 23 23 G G B . n B 1 24 C 24 24 24 C C B . n B 1 25 G 25 25 25 G G B . n B 1 26 G 26 26 26 G G B . n B 1 27 A 27 27 27 A A B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 C 30 30 30 C C B . n B 1 31 G 31 31 31 G G B . n B 1 32 C 32 32 32 C C B . n B 1 33 C 33 33 33 C C B . n B 1 34 A 34 34 34 A A B . n B 1 35 G 35 35 35 G G B . n B 1 36 A 36 36 36 A A B . n B 1 37 U 37 37 37 U U B . n B 1 38 G 38 38 38 G G B . n B 1 39 C 39 39 39 C C B . n B 1 40 C 40 40 40 C C B . n B 1 41 U 41 41 41 U U B . n B 1 42 U 42 42 42 U U B . n B 1 43 G 43 43 43 G G B . n B 1 44 U 44 44 44 U U B . n B 1 45 C 45 45 45 C C B . n B 1 46 C 46 46 46 C C B . n B 1 47 C 47 47 47 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCO 1 101 4 NCO NCO A . D 2 NCO 1 102 5 NCO NCO A . E 2 NCO 1 103 6 NCO NCO A . F 2 NCO 1 104 7 NCO NCO A . G 2 NCO 1 101 1 NCO NCO B . H 2 NCO 1 102 2 NCO NCO B . I 2 NCO 1 103 3 NCO NCO B . J 2 NCO 1 104 8 NCO NCO B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6C27 _cell.details ? _cell.formula_units_Z ? _cell.length_a 74.011 _cell.length_a_esd ? _cell.length_b 96.791 _cell.length_b_esd ? _cell.length_c 168.882 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6C27 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 75.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20 mM MgCl2, 50 mM sodium cacodylate pH 7.0, 1 mM hexamine cobalt chloride, 2 mM spermine, and 12-16 % (v/v) 2-propanol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-06-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 122.490 _reflns.entry_id 6C27 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.600 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6980 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.500 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.200 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.018 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 3.600 3.660 ? ? ? ? ? ? 254 73.800 ? ? ? ? 0.449 ? ? ? ? ? ? ? ? 4.600 ? 0.592 ? ? ? ? ? 1 1 ? ? 3.660 3.730 ? ? ? ? ? ? 275 76.200 ? ? ? ? 0.335 ? ? ? ? ? ? ? ? 4.700 ? 0.615 ? ? ? ? ? 2 1 ? ? 3.730 3.800 ? ? ? ? ? ? 280 76.900 ? ? ? ? 0.214 ? ? ? ? ? ? ? ? 5.400 ? 0.604 ? ? ? ? ? 3 1 ? ? 3.800 3.880 ? ? ? ? ? ? 310 85.900 ? ? ? ? 0.197 ? ? ? ? ? ? ? ? 5.600 ? 0.637 ? ? ? ? ? 4 1 ? ? 3.880 3.960 ? ? ? ? ? ? 316 89.300 ? ? ? ? 0.195 ? ? ? ? ? ? ? ? 5.800 ? 0.659 ? ? ? ? ? 5 1 ? ? 3.960 4.050 ? ? ? ? ? ? 366 95.800 ? ? ? ? 0.252 ? ? ? ? ? ? ? ? 5.900 ? 0.597 ? ? ? ? ? 6 1 ? ? 4.050 4.160 ? ? ? ? ? ? 351 99.200 ? ? ? ? 0.302 ? ? ? ? ? ? ? ? 6.300 ? 0.574 ? ? ? ? ? 7 1 ? ? 4.160 4.270 ? ? ? ? ? ? 357 99.200 ? ? ? ? 0.249 ? ? ? ? ? ? ? ? 6.600 ? 0.643 ? ? ? ? ? 8 1 ? ? 4.270 4.390 ? ? ? ? ? ? 373 100.000 ? ? ? ? 0.243 ? ? ? ? ? ? ? ? 6.600 ? 0.646 ? ? ? ? ? 9 1 ? ? 4.390 4.540 ? ? ? ? ? ? 356 100.000 ? ? ? ? 0.192 ? ? ? ? ? ? ? ? 6.800 ? 0.683 ? ? ? ? ? 10 1 ? ? 4.540 4.700 ? ? ? ? ? ? 383 100.000 ? ? ? ? 0.143 ? ? ? ? ? ? ? ? 6.700 ? 0.725 ? ? ? ? ? 11 1 ? ? 4.700 4.890 ? ? ? ? ? ? 344 100.000 ? ? ? ? 0.115 ? ? ? ? ? ? ? ? 6.800 ? 0.780 ? ? ? ? ? 12 1 ? ? 4.890 5.110 ? ? ? ? ? ? 385 100.000 ? ? ? ? 0.107 ? ? ? ? ? ? ? ? 6.800 ? 0.831 ? ? ? ? ? 13 1 ? ? 5.110 5.380 ? ? ? ? ? ? 360 100.000 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? 6.700 ? 1.044 ? ? ? ? ? 14 1 ? ? 5.380 5.710 ? ? ? ? ? ? 372 100.000 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 6.600 ? 1.332 ? ? ? ? ? 15 1 ? ? 5.710 6.150 ? ? ? ? ? ? 380 99.700 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 6.500 ? 1.558 ? ? ? ? ? 16 1 ? ? 6.150 6.770 ? ? ? ? ? ? 373 100.000 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 6.300 ? 1.861 ? ? ? ? ? 17 1 ? ? 6.770 7.750 ? ? ? ? ? ? 371 100.000 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 6.100 ? 1.819 ? ? ? ? ? 18 1 ? ? 7.750 9.750 ? ? ? ? ? ? 386 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 6.000 ? 1.825 ? ? ? ? ? 19 1 ? ? 9.750 50.000 ? ? ? ? ? ? 388 92.200 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 5.700 ? 1.646 ? ? ? ? ? 20 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 431.260 _refine.B_iso_mean 180.3013 _refine.B_iso_min 83.480 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6C27 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.6010 _refine.ls_d_res_low 37.0050 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6800 _refine.ls_number_reflns_R_free 318 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.0100 _refine.ls_percent_reflns_R_free 4.6800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2117 _refine.ls_R_factor_R_free 0.2432 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2103 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.3900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.6000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.6010 _refine_hist.d_res_low 37.0050 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2092 _refine_hist.pdbx_number_residues_total 94 _refine_hist.pdbx_B_iso_mean_ligand 197.51 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2036 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.001 ? 2324 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.379 ? 3666 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.015 ? 468 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.001 ? 94 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 10.929 ? 1126 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_weight 1 'X-RAY DIFFRACTION' 1 1 TORSIONAL A 874 0.317 ? ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' 1 2 TORSIONAL B 874 0.317 ? ? ? ? ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.6005 3.66 3117 . 143 2974 87.0000 . . . 0.3346 0.0000 0.3061 . . . . . . 2 . . . 'X-RAY DIFFRACTION' 4.5350 37.0074 3683 . 175 3508 99.0000 . . . 0.2230 0.0000 0.1881 . . . . . . 2 . . . # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 'chain A' 1 2 'chain B' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A GTP 1 . A C 47 . A GTP 1 A C 47 ? 'chain A' 1 2 1 B GTP 1 . B C 47 . B GTP 1 B C 47 ? 'chain B' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 6C27 _struct.title 'SAM-III riboswitch ON-state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6C27 _struct_keywords.text 'riboswitch, regulation, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6C27 _struct_ref.pdbx_db_accession 6C27 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6C27 A 1 ? 47 ? 6C27 1 ? 47 ? 1 47 2 1 6C27 B 1 ? 47 ? 6C27 1 ? 47 ? 1 47 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F 2 1 B,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 1 B G 2 1_555 ? ? ? ? ? ? ? 1.588 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 2 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 2 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 2 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 3 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 3 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 3 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 44 N3 ? ? A A 4 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 44 O4 ? ? A A 4 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 5 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 5 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 5 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 6 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 6 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 7 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 7 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 8 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 8 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 8 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 9 O4 ? ? ? 1_555 A C 39 N4 ? ? A U 9 A C 39 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 10 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 10 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 11 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 11 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 11 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 12 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 12 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 12 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 A A 17 N6 ? ? A C 13 A A 17 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog29 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 34 N1 ? ? A U 21 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 21 A A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 22 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 22 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 22 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 23 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 24 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 25 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 25 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 25 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 26 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 26 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 26 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 26 N2 ? ? ? 1_555 B A 28 N1 ? ? A G 26 B A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog47 hydrog ? ? A G 26 N3 ? ? ? 1_555 B A 28 N6 ? ? A G 26 B A 28 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? A A 27 N6 ? ? ? 1_555 B C 30 O2 ? ? A A 27 B C 30 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog49 hydrog ? ? A A 28 N3 ? ? ? 1_555 B A 29 N6 ? ? A A 28 B A 29 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A A 29 N6 ? ? ? 1_555 B A 28 N3 ? ? A A 29 B A 28 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 30 O2 ? ? ? 1_555 B A 27 N6 ? ? A C 30 B A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A G 35 N1 ? ? ? 1_555 A G 38 O6 ? ? A G 35 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? A G 35 N2 ? ? ? 1_555 A G 38 N7 ? ? A G 35 A G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 46 N4 ? ? B G 2 B C 46 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog55 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 47 N3 ? ? B G 2 B C 47 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog56 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 45 N3 ? ? B G 3 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 45 O2 ? ? B G 3 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 45 N4 ? ? B G 3 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 44 N3 ? ? B A 4 B U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 44 O4 ? ? B A 4 B U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 5 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 5 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 5 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 42 N3 ? ? B A 6 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 42 O4 ? ? B A 6 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 41 N3 ? ? B A 7 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 41 O4 ? ? B A 7 B U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 8 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 8 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 8 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 8 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 8 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B U 9 O4 ? ? ? 1_555 B C 39 N4 ? ? B U 9 B C 39 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog72 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 20 N1 ? ? B U 10 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 20 N6 ? ? B U 10 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 19 O6 ? ? B C 11 B G 19 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog75 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 12 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 12 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 12 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 13 O2 ? ? ? 1_555 B A 17 N6 ? ? B C 13 B A 17 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog79 hydrog ? ? B U 21 N3 ? ? ? 1_555 B A 34 N1 ? ? B U 21 B A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B U 21 O4 ? ? ? 1_555 B A 34 N6 ? ? B U 21 B A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 22 N1 ? ? ? 1_555 B C 33 N3 ? ? B G 22 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 22 N2 ? ? ? 1_555 B C 33 O2 ? ? B G 22 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 22 O6 ? ? ? 1_555 B C 33 N4 ? ? B G 22 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 23 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 23 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 23 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 31 N1 ? ? B C 24 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 31 O6 ? ? B C 24 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 31 N2 ? ? B C 24 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 30 N3 ? ? B G 25 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 30 O2 ? ? B G 25 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 30 N4 ? ? B G 25 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 35 N1 ? ? ? 1_555 B G 38 O6 ? ? B G 35 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog94 hydrog ? ? B G 35 N2 ? ? ? 1_555 B G 38 N7 ? ? B G 35 B G 38 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 101 ? 5 'binding site for residue NCO A 101' AC2 Software A NCO 102 ? 3 'binding site for residue NCO A 102' AC3 Software A NCO 103 ? 2 'binding site for residue NCO A 103' AC4 Software A NCO 104 ? 2 'binding site for residue NCO A 104' AC5 Software B NCO 101 ? 7 'binding site for residue NCO B 101' AC6 Software B NCO 102 ? 2 'binding site for residue NCO B 102' AC7 Software B NCO 103 ? 2 'binding site for residue NCO B 103' AC8 Software B NCO 104 ? 5 'binding site for residue NCO B 104' AC9 Software B GTP 1 ? 5 'binding site for Di-nucleotide GTP B 1 and G B 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 9 ? U A 9 . ? 1_555 ? 2 AC1 5 U A 10 ? U A 10 . ? 1_555 ? 3 AC1 5 C A 11 ? C A 11 . ? 1_555 ? 4 AC1 5 G A 35 ? G A 35 . ? 1_555 ? 5 AC1 5 U A 37 ? U A 37 . ? 1_555 ? 6 AC2 3 U A 21 ? U A 21 . ? 1_555 ? 7 AC2 3 G A 22 ? G A 22 . ? 1_555 ? 8 AC2 3 G A 23 ? G A 23 . ? 1_555 ? 9 AC3 2 G A 26 ? G A 26 . ? 1_555 ? 10 AC3 2 A A 28 ? A A 28 . ? 1_555 ? 11 AC4 2 G A 2 ? G A 2 . ? 1_555 ? 12 AC4 2 G A 3 ? G A 3 . ? 1_555 ? 13 AC5 7 G A 8 ? G A 8 . ? 4_555 ? 14 AC5 7 U A 9 ? U A 9 . ? 4_555 ? 15 AC5 7 G A 35 ? G A 35 . ? 4_555 ? 16 AC5 7 G A 38 ? G A 38 . ? 4_555 ? 17 AC5 7 C A 39 ? C A 39 . ? 4_555 ? 18 AC5 7 C A 40 ? C A 40 . ? 4_555 ? 19 AC5 7 A B 17 ? A B 17 . ? 1_555 ? 20 AC6 2 U B 21 ? U B 21 . ? 1_555 ? 21 AC6 2 G B 22 ? G B 22 . ? 1_555 ? 22 AC7 2 G B 26 ? G B 26 . ? 1_555 ? 23 AC7 2 A B 28 ? A B 28 . ? 1_555 ? 24 AC8 5 A A 17 ? A A 17 . ? 4_555 ? 25 AC8 5 U B 9 ? U B 9 . ? 1_555 ? 26 AC8 5 G B 35 ? G B 35 . ? 1_555 ? 27 AC8 5 G B 38 ? G B 38 . ? 1_555 ? 28 AC8 5 C B 40 ? C B 40 . ? 1_555 ? 29 AC9 5 GTP A 1 ? GTP A 1 . ? 8_545 ? 30 AC9 5 C A 47 ? C A 47 . ? 8_545 ? 31 AC9 5 G B 3 ? G B 3 . ? 1_555 ? 32 AC9 5 C B 46 ? C B 46 . ? 1_555 ? 33 AC9 5 C B 47 ? C B 47 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A GTP 1 ? ? P A G 2 ? ? "O5'" A G 2 ? ? 83.63 104.00 -20.37 1.90 Y 2 1 "O3'" A GTP 1 ? ? P A G 2 ? ? OP1 A G 2 ? ? 125.65 110.50 15.15 1.10 Y # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -11.2082 -11.8520 -34.1717 1.5874 2.6267 1.2731 -0.4379 -0.1703 0.1681 2.6160 0.9919 0.1653 1.5831 0.0191 0.1348 -0.7102 0.9432 -0.0128 3.0905 2.3015 1.2407 -0.9633 1.3095 1.9655 'X-RAY DIFFRACTION' 2 ? refined -3.4808 8.3761 -31.7161 1.6776 1.1068 1.6162 -0.1373 -0.1042 -0.0522 0.5270 0.1516 0.5928 -0.1865 -0.2967 0.4882 -0.0208 -0.5032 -0.0005 -0.3661 -0.0890 0.9846 1.0884 -2.0478 0.7183 'X-RAY DIFFRACTION' 3 ? refined -1.8365 7.4738 -16.8439 1.5097 0.9872 1.2706 0.0247 0.0138 -0.2049 -0.6117 -0.2638 -0.4127 0.1240 0.0985 0.4231 -0.5107 -0.1038 -0.0000 0.0068 0.1184 0.2414 -0.1159 -0.7772 0.0816 'X-RAY DIFFRACTION' 4 ? refined -13.3741 -17.6317 -31.8322 1.1869 1.1722 1.6256 -0.6937 0.3647 0.0628 0.0302 1.0424 1.4009 -0.1125 0.0907 -0.2133 -0.1486 0.2618 -0.5415 0.1976 0.7889 0.9922 2.0918 0.7616 0.0421 'X-RAY DIFFRACTION' 5 ? refined 20.4231 -4.9369 31.7802 1.4063 1.6996 1.5896 0.5290 -0.0956 0.1816 0.6348 0.0831 0.6732 -0.1549 -0.3479 -0.6275 -0.3171 1.0245 0.0564 -0.4835 0.6756 -1.7137 1.3232 -0.7899 0.4284 'X-RAY DIFFRACTION' 6 ? refined 12.4922 16.3670 29.3279 1.3937 1.7227 1.8362 0.1610 -0.2166 0.0065 0.2579 0.0498 0.3674 0.0480 -0.0411 0.3053 0.4541 0.9096 0.0199 0.5285 1.7476 -0.8104 -0.3855 -2.7414 0.1061 'X-RAY DIFFRACTION' 7 ? refined 14.3910 2.7444 19.1324 1.1592 1.5407 1.3549 0.2559 0.0965 0.0293 -1.1108 1.2679 -0.7003 0.2812 1.4682 0.6298 -0.2758 0.2777 0.0002 0.0412 0.2131 -0.7076 -0.5550 0.4197 -0.0823 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 2 A 8 ;chain 'A' and (resid 2 through 8 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 9 A 17 ;chain 'A' and (resid 9 through 17 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 18 A 39 ;chain 'A' and (resid 18 through 39 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 40 A 47 ;chain 'A' and (resid 40 through 47 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 2 B 10 ;chain 'B' and (resid 2 through 10 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 11 B 19 ;chain 'B' and (resid 11 through 19 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 B 20 B 47 ;chain 'B' and (resid 20 through 47 ) ; ? ? ? ? ? # _phasing.method SAD # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 NCO CO CO N N 159 NCO N1 N N N 160 NCO N2 N N N 161 NCO N3 N N N 162 NCO N4 N N N 163 NCO N5 N N N 164 NCO N6 N N N 165 NCO HN11 H N N 166 NCO HN12 H N N 167 NCO HN13 H N N 168 NCO HN21 H N N 169 NCO HN22 H N N 170 NCO HN23 H N N 171 NCO HN31 H N N 172 NCO HN32 H N N 173 NCO HN33 H N N 174 NCO HN41 H N N 175 NCO HN42 H N N 176 NCO HN43 H N N 177 NCO HN51 H N N 178 NCO HN52 H N N 179 NCO HN53 H N N 180 NCO HN61 H N N 181 NCO HN62 H N N 182 NCO HN63 H N N 183 U OP3 O N N 184 U P P N N 185 U OP1 O N N 186 U OP2 O N N 187 U "O5'" O N N 188 U "C5'" C N N 189 U "C4'" C N R 190 U "O4'" O N N 191 U "C3'" C N S 192 U "O3'" O N N 193 U "C2'" C N R 194 U "O2'" O N N 195 U "C1'" C N R 196 U N1 N N N 197 U C2 C N N 198 U O2 O N N 199 U N3 N N N 200 U C4 C N N 201 U O4 O N N 202 U C5 C N N 203 U C6 C N N 204 U HOP3 H N N 205 U HOP2 H N N 206 U "H5'" H N N 207 U "H5''" H N N 208 U "H4'" H N N 209 U "H3'" H N N 210 U "HO3'" H N N 211 U "H2'" H N N 212 U "HO2'" H N N 213 U "H1'" H N N 214 U H3 H N N 215 U H5 H N N 216 U H6 H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 NCO CO N1 sing N N 166 NCO CO N2 sing N N 167 NCO CO N3 sing N N 168 NCO CO N4 sing N N 169 NCO CO N5 sing N N 170 NCO CO N6 sing N N 171 NCO N1 HN11 sing N N 172 NCO N1 HN12 sing N N 173 NCO N1 HN13 sing N N 174 NCO N2 HN21 sing N N 175 NCO N2 HN22 sing N N 176 NCO N2 HN23 sing N N 177 NCO N3 HN31 sing N N 178 NCO N3 HN32 sing N N 179 NCO N3 HN33 sing N N 180 NCO N4 HN41 sing N N 181 NCO N4 HN42 sing N N 182 NCO N4 HN43 sing N N 183 NCO N5 HN51 sing N N 184 NCO N5 HN52 sing N N 185 NCO N5 HN53 sing N N 186 NCO N6 HN61 sing N N 187 NCO N6 HN62 sing N N 188 NCO N6 HN63 sing N N 189 U OP3 P sing N N 190 U OP3 HOP3 sing N N 191 U P OP1 doub N N 192 U P OP2 sing N N 193 U P "O5'" sing N N 194 U OP2 HOP2 sing N N 195 U "O5'" "C5'" sing N N 196 U "C5'" "C4'" sing N N 197 U "C5'" "H5'" sing N N 198 U "C5'" "H5''" sing N N 199 U "C4'" "O4'" sing N N 200 U "C4'" "C3'" sing N N 201 U "C4'" "H4'" sing N N 202 U "O4'" "C1'" sing N N 203 U "C3'" "O3'" sing N N 204 U "C3'" "C2'" sing N N 205 U "C3'" "H3'" sing N N 206 U "O3'" "HO3'" sing N N 207 U "C2'" "O2'" sing N N 208 U "C2'" "C1'" sing N N 209 U "C2'" "H2'" sing N N 210 U "O2'" "HO2'" sing N N 211 U "C1'" N1 sing N N 212 U "C1'" "H1'" sing N N 213 U N1 C2 sing N N 214 U N1 C6 sing N N 215 U C2 O2 doub N N 216 U C2 N3 sing N N 217 U N3 C4 sing N N 218 U N3 H3 sing N N 219 U C4 O4 doub N N 220 U C4 C5 sing N N 221 U C5 C6 doub N N 222 U C5 H5 sing N N 223 U C6 H6 sing N N 224 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6C27 'double helix' 6C27 'a-form double helix' 6C27 'hairpin loop' 6C27 'bulge loop' 6C27 'mismatched base pair' 6C27 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 46 1_555 0.875 -0.088 -0.437 -13.850 2.494 -1.868 1 A_G2:C46_A A 2 ? A 46 ? 19 1 1 A G 3 1_555 A C 45 1_555 0.595 -0.132 -0.788 -10.708 -1.731 1.595 2 A_G3:C45_A A 3 ? A 45 ? 19 1 1 A A 4 1_555 A U 44 1_555 -0.028 -0.074 -0.335 -7.941 -4.648 -2.388 3 A_A4:U44_A A 4 ? A 44 ? 20 1 1 A C 5 1_555 A G 43 1_555 -0.166 -0.073 -0.161 1.610 -6.052 0.502 4 A_C5:G43_A A 5 ? A 43 ? 19 1 1 A A 6 1_555 A U 42 1_555 -0.067 -0.065 -0.037 -2.380 -2.971 -2.354 5 A_A6:U42_A A 6 ? A 42 ? 20 1 1 A A 7 1_555 A U 41 1_555 0.525 -0.082 0.054 -3.240 -13.570 -1.530 6 A_A7:U41_A A 7 ? A 41 ? 20 1 1 A G 8 1_555 A C 40 1_555 0.796 -0.118 -0.328 -10.414 -11.810 0.772 7 A_G8:C40_A A 8 ? A 40 ? 19 1 1 A U 9 1_555 A C 39 1_555 -1.309 4.376 1.037 -29.920 -2.183 -173.605 8 A_U9:C39_A A 9 ? A 39 ? ? ? 1 A G 35 1_555 A G 38 1_555 2.093 2.811 1.995 -32.400 17.509 -87.729 9 A_G35:G38_A A 35 ? A 38 ? 6 3 1 A A 17 1_555 A C 13 1_555 -5.662 -1.824 1.782 -12.578 27.393 9.220 10 A_A17:C13_A A 17 ? A 13 ? ? ? 1 A G 18 1_555 A C 12 1_555 0.336 -0.056 0.075 -5.601 11.507 1.959 11 A_G18:C12_A A 18 ? A 12 ? 19 1 1 A G 19 1_555 A C 11 1_555 0.047 0.163 -0.379 -4.909 -19.440 -6.890 12 A_G19:C11_A A 19 ? A 11 ? 19 1 1 A A 20 1_555 A U 10 1_555 1.078 -0.088 -0.071 0.480 -19.995 -9.873 13 A_A20:U10_A A 20 ? A 10 ? 20 1 1 A U 21 1_555 A A 34 1_555 -0.386 0.059 0.093 -2.755 -3.498 -3.457 14 A_U21:A34_A A 21 ? A 34 ? 20 1 1 A G 22 1_555 A C 33 1_555 0.192 0.385 -0.106 0.677 -5.179 4.616 15 A_G22:C33_A A 22 ? A 33 ? 19 1 1 A G 23 1_555 A C 32 1_555 0.092 -0.086 -0.303 -3.302 -13.791 2.777 16 A_G23:C32_A A 23 ? A 32 ? 19 1 1 A C 24 1_555 A G 31 1_555 0.070 -0.098 -0.277 0.316 -7.935 0.723 17 A_C24:G31_A A 24 ? A 31 ? 19 1 1 A G 25 1_555 A C 30 1_555 1.222 0.084 -1.029 -9.100 2.976 -6.599 18 A_G25:C30_A A 25 ? A 30 ? 19 1 1 B A 28 1_555 A G 26 1_555 -4.059 3.881 0.532 -32.585 -15.309 72.633 19 B_A28:G26_A B 28 ? A 26 ? 10 6 1 B A 29 1_555 A A 28 1_555 -6.495 -3.365 -0.079 -0.286 -7.574 -25.682 20 B_A29:A28_A B 29 ? A 28 ? ? 10 1 B G 2 1_555 B C 46 1_555 0.974 0.814 -0.989 -15.884 2.511 -10.310 21 B_G2:C46_B B 2 ? B 46 ? ? ? 1 B G 3 1_555 B C 45 1_555 1.706 0.343 -0.694 -10.385 -1.116 0.978 22 B_G3:C45_B B 3 ? B 45 ? 19 1 1 B A 4 1_555 B U 44 1_555 0.267 -0.024 -0.198 -6.472 -5.334 -1.925 23 B_A4:U44_B B 4 ? B 44 ? 20 1 1 B C 5 1_555 B G 43 1_555 -0.096 -0.072 -0.149 3.015 -8.834 1.600 24 B_C5:G43_B B 5 ? B 43 ? 19 1 1 B A 6 1_555 B U 42 1_555 -0.176 -0.060 -0.073 -3.044 -4.971 -1.373 25 B_A6:U42_B B 6 ? B 42 ? 20 1 1 B A 7 1_555 B U 41 1_555 0.303 -0.026 0.056 -2.974 -12.628 -1.845 26 B_A7:U41_B B 7 ? B 41 ? 20 1 1 B G 8 1_555 B C 40 1_555 0.823 -0.115 -0.164 -8.303 -13.166 0.930 27 B_G8:C40_B B 8 ? B 40 ? 19 1 1 B U 9 1_555 B C 39 1_555 -1.265 4.088 1.239 -28.747 -0.675 -171.158 28 B_U9:C39_B B 9 ? B 39 ? ? ? 1 B G 35 1_555 B G 38 1_555 2.152 2.843 2.012 -31.227 15.274 -86.226 29 B_G35:G38_B B 35 ? B 38 ? 6 3 1 B A 17 1_555 B C 13 1_555 -4.102 -0.389 1.418 -20.545 31.703 -16.244 30 B_A17:C13_B B 17 ? B 13 ? ? 1 1 B G 18 1_555 B C 12 1_555 0.446 0.487 0.690 1.332 21.520 -0.987 31 B_G18:C12_B B 18 ? B 12 ? 19 1 1 B G 19 1_555 B C 11 1_555 0.704 0.415 -0.440 -4.603 -22.114 -7.429 32 B_G19:C11_B B 19 ? B 11 ? ? 1 1 B A 20 1_555 B U 10 1_555 1.053 -0.110 0.205 1.293 -24.531 -9.785 33 B_A20:U10_B B 20 ? B 10 ? 20 1 1 B U 21 1_555 B A 34 1_555 0.259 0.464 0.323 -0.992 -3.928 3.994 34 B_U21:A34_B B 21 ? B 34 ? 20 1 1 B G 22 1_555 B C 33 1_555 0.401 -0.028 0.029 -1.313 -6.342 1.911 35 B_G22:C33_B B 22 ? B 33 ? 19 1 1 B G 23 1_555 B C 32 1_555 -0.429 -0.161 -0.026 -6.433 -16.566 1.972 36 B_G23:C32_B B 23 ? B 32 ? 19 1 1 B C 24 1_555 B G 31 1_555 0.080 -0.095 0.033 -3.086 -11.198 1.471 37 B_C24:G31_B B 24 ? B 31 ? 19 1 1 B G 25 1_555 B C 30 1_555 0.777 -0.104 -0.313 -2.309 0.635 -1.895 38 B_G25:C30_B B 25 ? B 30 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 46 1_555 A G 3 1_555 A C 45 1_555 0.141 -1.955 3.585 3.240 2.330 30.033 -4.248 0.433 3.423 4.471 -6.218 30.291 1 AA_G2G3:C45C46_AA A 2 ? A 46 ? A 3 ? A 45 ? 1 A G 3 1_555 A C 45 1_555 A A 4 1_555 A U 44 1_555 -0.416 -1.263 3.244 -2.799 13.337 30.762 -4.204 0.296 2.523 23.734 4.981 33.579 2 AA_G3A4:U44C45_AA A 3 ? A 45 ? A 4 ? A 44 ? 1 A A 4 1_555 A U 44 1_555 A C 5 1_555 A G 43 1_555 0.329 -1.242 3.076 -0.511 9.724 31.204 -3.701 -0.664 2.577 17.549 0.922 32.652 3 AA_A4C5:G43U44_AA A 4 ? A 44 ? A 5 ? A 43 ? 1 A C 5 1_555 A G 43 1_555 A A 6 1_555 A U 42 1_555 -0.123 -1.382 3.309 -1.412 11.362 32.789 -3.968 0.001 2.698 19.404 2.411 34.678 4 AA_C5A6:U42G43_AA A 5 ? A 43 ? A 6 ? A 42 ? 1 A A 6 1_555 A U 42 1_555 A A 7 1_555 A U 41 1_555 0.053 -1.350 3.296 0.468 7.068 35.216 -3.170 -0.021 2.979 11.539 -0.764 35.899 5 AA_A6A7:U41U42_AA A 6 ? A 42 ? A 7 ? A 41 ? 1 A A 7 1_555 A U 41 1_555 A G 8 1_555 A C 40 1_555 0.088 -1.490 3.482 1.451 8.983 35.194 -3.660 0.064 3.024 14.558 -2.351 36.315 6 AA_A7G8:C40U41_AA A 7 ? A 41 ? A 8 ? A 40 ? 1 A G 8 1_555 A C 40 1_555 A U 9 1_555 A C 39 1_555 3.368 -0.805 -0.591 -72.414 -155.926 -151.415 0.346 1.710 -0.403 78.076 -36.260 -178.007 7 AA_G8U9:C39C40_AA A 8 ? A 40 ? A 9 ? A 39 ? 1 A U 9 1_555 A C 39 1_555 A G 35 1_555 A G 38 1_555 0.459 -0.883 -2.847 -5.139 1.536 -0.781 16.072 27.392 0.275 -23.397 -78.299 -5.420 8 AA_U9G35:G38C39_AA A 9 ? A 39 ? A 35 ? A 38 ? 1 A A 17 1_555 A C 13 1_555 A G 18 1_555 A C 12 1_555 -0.040 -1.007 3.630 6.203 12.530 46.454 -2.272 0.566 3.241 15.478 -7.663 48.401 9 AA_A17G18:C12C13_AA A 17 ? A 13 ? A 18 ? A 12 ? 1 A G 18 1_555 A C 12 1_555 A G 19 1_555 A C 11 1_555 -0.160 -1.592 3.489 4.571 11.924 32.999 -4.359 0.929 2.724 20.080 -7.698 35.319 10 AA_G18G19:C11C12_AA A 18 ? A 12 ? A 19 ? A 11 ? 1 A G 19 1_555 A C 11 1_555 A A 20 1_555 A U 10 1_555 -0.399 -1.498 3.040 -6.132 6.150 35.933 -3.114 -0.118 2.783 9.793 9.765 36.934 11 AA_G19A20:U10C11_AA A 19 ? A 11 ? A 20 ? A 10 ? 1 A A 20 1_555 A U 10 1_555 A U 21 1_555 A A 34 1_555 2.367 -1.667 3.037 5.103 -2.888 45.444 -1.896 -2.606 3.364 -3.721 -6.573 45.801 12 AA_A20U21:A34U10_AA A 20 ? A 10 ? A 21 ? A 34 ? 1 A U 21 1_555 A A 34 1_555 A G 22 1_555 A C 33 1_555 0.452 -1.235 3.229 -0.935 11.381 31.357 -3.902 -0.932 2.620 20.235 1.663 33.322 13 AA_U21G22:C33A34_AA A 21 ? A 34 ? A 22 ? A 33 ? 1 A G 22 1_555 A C 33 1_555 A G 23 1_555 A C 32 1_555 -0.142 -1.462 3.461 -1.265 4.823 31.296 -3.591 0.020 3.209 8.871 2.326 31.681 14 AA_G22G23:C32C33_AA A 22 ? A 33 ? A 23 ? A 32 ? 1 A G 23 1_555 A C 32 1_555 A C 24 1_555 A G 31 1_555 -0.158 -1.710 3.126 -0.663 2.181 33.945 -3.250 0.170 3.016 3.731 1.135 34.020 15 AA_G23C24:G31C32_AA A 23 ? A 32 ? A 24 ? A 31 ? 1 A C 24 1_555 A G 31 1_555 A G 25 1_555 A C 30 1_555 -0.471 -1.583 3.718 6.330 12.058 34.641 -4.174 1.626 2.899 19.351 -10.158 37.146 16 AA_C24G25:C30G31_AA A 24 ? A 31 ? A 25 ? A 30 ? 1 A G 25 1_555 A C 30 1_555 B A 28 1_555 A G 26 1_555 -3.607 -0.262 2.572 -0.600 -4.421 49.082 -0.052 4.291 2.626 -5.309 0.720 49.272 17 AB_G25A28:G26C30_AA A 25 ? A 30 ? B 28 ? A 26 ? 1 B A 28 1_555 A G 26 1_555 B A 29 1_555 A A 28 1_555 -4.781 2.063 4.102 -19.568 6.546 34.112 1.741 3.164 6.158 10.096 30.181 39.708 18 BB_A28A29:A28G26_AA B 28 ? A 26 ? B 29 ? A 28 ? 1 B G 2 1_555 B C 46 1_555 B G 3 1_555 B C 45 1_555 0.723 -1.823 3.363 0.961 5.383 33.154 -4.025 -1.095 3.057 9.355 -1.670 33.590 19 BB_G2G3:C45C46_BB B 2 ? B 46 ? B 3 ? B 45 ? 1 B G 3 1_555 B C 45 1_555 B A 4 1_555 B U 44 1_555 -0.221 -1.382 3.052 -2.002 15.508 27.787 -4.883 0.098 2.027 29.518 3.811 31.809 20 BB_G3A4:U44C45_BB B 3 ? B 45 ? B 4 ? B 44 ? 1 B A 4 1_555 B U 44 1_555 B C 5 1_555 B G 43 1_555 0.369 -1.329 3.055 0.359 8.058 30.345 -3.797 -0.623 2.628 15.061 -0.671 31.374 21 BB_A4C5:G43U44_BB B 4 ? B 44 ? B 5 ? B 43 ? 1 B C 5 1_555 B G 43 1_555 B A 6 1_555 B U 42 1_555 -0.174 -1.435 3.391 -1.339 9.246 31.982 -4.015 0.084 2.881 16.350 2.367 33.284 22 BB_C5A6:U42G43_BB B 5 ? B 43 ? B 6 ? B 42 ? 1 B A 6 1_555 B U 42 1_555 B A 7 1_555 B U 41 1_555 -0.069 -1.381 3.271 -0.257 5.384 34.070 -3.139 0.078 3.024 9.119 0.435 34.482 23 BB_A6A7:U41U42_BB B 6 ? B 42 ? B 7 ? B 41 ? 1 B A 7 1_555 B U 41 1_555 B G 8 1_555 B C 40 1_555 0.103 -1.471 3.398 0.912 8.295 35.598 -3.481 -0.039 2.993 13.342 -1.468 36.532 24 BB_A7G8:C40U41_BB B 7 ? B 41 ? B 8 ? B 40 ? 1 B G 8 1_555 B C 40 1_555 B U 9 1_555 B C 39 1_555 3.440 -0.897 -0.725 -74.078 -154.129 -169.623 0.420 1.733 -0.661 77.081 -37.047 -179.188 25 BB_G8U9:C39C40_BB B 8 ? B 40 ? B 9 ? B 39 ? 1 B U 9 1_555 B C 39 1_555 B G 35 1_555 B G 38 1_555 0.362 -0.974 -2.943 -5.609 -0.114 -2.998 8.337 25.025 -1.086 1.262 -61.893 -6.360 26 BB_U9G35:G38C39_BB B 9 ? B 39 ? B 35 ? B 38 ? 1 B A 17 1_555 B C 13 1_555 B G 18 1_555 B C 12 1_555 1.356 -1.114 3.228 -3.187 15.398 38.091 -3.112 -2.247 2.498 22.460 4.649 41.097 27 BB_A17G18:C12C13_BB B 17 ? B 13 ? B 18 ? B 12 ? 1 B G 18 1_555 B C 12 1_555 B G 19 1_555 B C 11 1_555 0.253 -1.596 3.930 9.592 14.307 34.944 -4.366 0.937 3.040 22.234 -14.906 38.840 28 BB_G18G19:C11C12_BB B 18 ? B 12 ? B 19 ? B 11 ? 1 B G 19 1_555 B C 11 1_555 B A 20 1_555 B U 10 1_555 -0.211 -1.475 2.887 -6.787 8.764 34.070 -3.456 -0.473 2.442 14.489 11.222 35.777 29 BB_G19A20:U10C11_BB B 19 ? B 11 ? B 20 ? B 10 ? 1 B A 20 1_555 B U 10 1_555 B U 21 1_555 B A 34 1_555 2.641 -1.619 3.097 3.444 -4.240 46.476 -1.688 -3.041 3.400 -5.352 -4.346 46.779 30 BB_A20U21:A34U10_BB B 20 ? B 10 ? B 21 ? B 34 ? 1 B U 21 1_555 B A 34 1_555 B G 22 1_555 B C 33 1_555 -0.033 -1.272 3.386 -0.361 10.786 30.434 -4.155 -0.003 2.785 19.781 0.663 32.249 31 BB_U21G22:C33A34_BB B 21 ? B 34 ? B 22 ? B 33 ? 1 B G 22 1_555 B C 33 1_555 B G 23 1_555 B C 32 1_555 -0.138 -1.556 3.425 -1.347 6.313 29.640 -4.247 -0.007 3.039 12.158 2.594 30.320 32 BB_G22G23:C32C33_BB B 22 ? B 33 ? B 23 ? B 32 ? 1 B G 23 1_555 B C 32 1_555 B C 24 1_555 B G 31 1_555 -0.185 -1.450 3.144 -1.093 4.409 35.235 -2.979 0.154 2.951 7.246 1.796 35.517 33 BB_G23C24:G31C32_BB B 23 ? B 32 ? B 24 ? B 31 ? 1 B C 24 1_555 B G 31 1_555 B G 25 1_555 B C 30 1_555 -0.208 -1.441 3.176 2.381 13.394 33.741 -3.981 0.630 2.429 21.998 -3.910 36.306 34 BB_C24G25:C30G31_BB B 24 ? B 31 ? B 25 ? B 30 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM-086766 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6C27 _atom_sites.fract_transf_matrix[1][1] 0.013512 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010332 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005921 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O P # loop_