HEADER DNA BINDING PROTEIN 07-JAN-18 6C28 TITLE TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO P-COUMAROYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, MARR FAMILY; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS (STRAIN ATCC BAA-98 SOURCE 3 / CGA009); SOURCE 4 ORGANISM_TAXID: 258594; SOURCE 5 STRAIN: ATCC BAA-98 / CGA009; SOURCE 6 GENE: COUR, RPA1794; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MBP KEYWDS TRANSCRIPTIONAL REGULATION, REPRESSOR, MARR FAMILY, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.COGAN,S.K.NAIR REVDAT 4 13-MAR-24 6C28 1 REMARK REVDAT 3 08-AUG-18 6C28 1 JRNL REVDAT 2 13-JUN-18 6C28 1 SOURCE JRNL REVDAT 1 30-MAY-18 6C28 0 JRNL AUTH D.P.COGAN,C.BARAQUET,C.S.HARWOOD,S.K.NAIR JRNL TITL STRUCTURAL BASIS OF TRANSCRIPTIONAL REGULATION BY COUR, A JRNL TITL 2 REPRESSOR OF COUMARATE CATABOLISM, INRHODOPSEUDOMONAS JRNL TITL 3 PALUSTRIS. JRNL REF J. BIOL. CHEM. V. 293 11727 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29794028 JRNL DOI 10.1074/JBC.RA118.003561 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2983 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : -2.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4724 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4604 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6410 ; 2.120 ; 2.057 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10564 ; 1.161 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 6.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;37.067 ;21.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 823 ;18.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;23.412 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5073 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 960 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2294 ; 4.187 ; 4.726 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2293 ; 4.179 ; 4.725 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2864 ; 6.041 ; 7.064 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2865 ; 6.040 ; 7.064 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2430 ; 5.430 ; 5.277 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2431 ; 5.429 ; 5.276 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3547 ; 8.089 ; 7.786 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5249 ;10.045 ;57.016 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5218 ;10.032 ;56.940 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6C28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43271 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 128.801 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THICK RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M LITHIUM SULFATE, 23.5% PEG 4K, REMARK 280 1 MM DTT, 0.085 M TRIS-HCL PH 8.5, 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.92700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.40050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.00300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.40050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.92700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.00300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 242.34300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 64.40050 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 242.34300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -64.40050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 ILE A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 LYS A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 GLY A 27 REMARK 465 ARG A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 VAL A 33 REMARK 465 GLU A 34 REMARK 465 THR A 35 REMARK 465 ALA A 36 REMARK 465 PRO A 37 REMARK 465 GLU A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 PRO A 127 REMARK 465 SER A 128 REMARK 465 ASP A 129 REMARK 465 ARG A 130 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 ARG B 6 REMARK 465 ILE B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 MET B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 LYS B 16 REMARK 465 THR B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 VAL B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 PRO B 23 REMARK 465 THR B 24 REMARK 465 ARG B 25 REMARK 465 ALA B 26 REMARK 465 GLY B 27 REMARK 465 ARG B 28 REMARK 465 LYS B 29 REMARK 465 ALA B 30 REMARK 465 PRO B 31 REMARK 465 ALA B 32 REMARK 465 VAL B 33 REMARK 465 GLU B 34 REMARK 465 THR B 35 REMARK 465 ALA B 36 REMARK 465 PRO B 37 REMARK 465 GLU B 38 REMARK 465 ALA B 39 REMARK 465 SER B 40 REMARK 465 SER B 128 REMARK 465 ASP B 129 REMARK 465 ARG B 130 REMARK 465 ARG B 131 REMARK 465 SER B 132 REMARK 465 SER C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 ASN C 5 REMARK 465 ARG C 6 REMARK 465 ILE C 7 REMARK 465 THR C 8 REMARK 465 SER C 9 REMARK 465 PRO C 10 REMARK 465 ALA C 11 REMARK 465 MET C 12 REMARK 465 THR C 13 REMARK 465 ALA C 14 REMARK 465 SER C 15 REMARK 465 LYS C 16 REMARK 465 THR C 17 REMARK 465 ALA C 18 REMARK 465 ALA C 19 REMARK 465 VAL C 20 REMARK 465 ALA C 21 REMARK 465 LYS C 22 REMARK 465 PRO C 23 REMARK 465 THR C 24 REMARK 465 ARG C 25 REMARK 465 ALA C 26 REMARK 465 GLY C 27 REMARK 465 ARG C 28 REMARK 465 LYS C 29 REMARK 465 ALA C 30 REMARK 465 PRO C 31 REMARK 465 ALA C 32 REMARK 465 VAL C 33 REMARK 465 GLU C 34 REMARK 465 THR C 35 REMARK 465 ALA C 36 REMARK 465 PRO C 37 REMARK 465 GLU C 38 REMARK 465 ALA C 39 REMARK 465 SER C 40 REMARK 465 SER C 126 REMARK 465 PRO C 127 REMARK 465 SER C 128 REMARK 465 ASP C 129 REMARK 465 ARG C 130 REMARK 465 ARG C 131 REMARK 465 SER C 132 REMARK 465 HIS C 133 REMARK 465 SER D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 SER D 3 REMARK 465 SER D 4 REMARK 465 ASN D 5 REMARK 465 ARG D 6 REMARK 465 ILE D 7 REMARK 465 THR D 8 REMARK 465 SER D 9 REMARK 465 PRO D 10 REMARK 465 ALA D 11 REMARK 465 MET D 12 REMARK 465 THR D 13 REMARK 465 ALA D 14 REMARK 465 SER D 15 REMARK 465 LYS D 16 REMARK 465 THR D 17 REMARK 465 ALA D 18 REMARK 465 ALA D 19 REMARK 465 VAL D 20 REMARK 465 ALA D 21 REMARK 465 LYS D 22 REMARK 465 PRO D 23 REMARK 465 THR D 24 REMARK 465 ARG D 25 REMARK 465 ALA D 26 REMARK 465 GLY D 27 REMARK 465 ARG D 28 REMARK 465 LYS D 29 REMARK 465 ALA D 30 REMARK 465 PRO D 31 REMARK 465 ALA D 32 REMARK 465 VAL D 33 REMARK 465 GLU D 34 REMARK 465 THR D 35 REMARK 465 ALA D 36 REMARK 465 PRO D 37 REMARK 465 GLU D 38 REMARK 465 ALA D 39 REMARK 465 SER D 40 REMARK 465 ARG D 125 REMARK 465 SER D 126 REMARK 465 PRO D 127 REMARK 465 SER D 128 REMARK 465 ASP D 129 REMARK 465 ARG D 130 REMARK 465 ARG D 131 REMARK 465 SER D 132 REMARK 465 HIS D 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 HIS B 133 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 ARG C 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU C 116 CD ARG C 123 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 57 O THR C 100 2954 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 42 CB - CG - CD1 ANGL. DEV. = -18.0 DEGREES REMARK 500 ARG C 57 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 57 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 156 -68.94 -104.94 REMARK 500 ARG B 125 129.35 23.10 REMARK 500 LEU C 42 -45.90 -153.84 REMARK 500 GLN C 74 63.27 60.79 REMARK 500 HIS C 156 -66.00 -108.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WCA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WCA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WCA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WCA D 201 DBREF 6C28 A 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C28 B 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C28 C 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 DBREF 6C28 D 1 183 UNP Q6N8V9 Q6N8V9_RHOPA 1 183 SEQADV 6C28 SER A -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 GLY A -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER A 0 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER B -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 GLY B -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER B 0 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER C -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 GLY C -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER C 0 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER D -2 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 GLY D -1 UNP Q6N8V9 EXPRESSION TAG SEQADV 6C28 SER D 0 UNP Q6N8V9 EXPRESSION TAG SEQRES 1 A 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 A 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 A 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 A 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 A 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 A 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 A 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 A 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 A 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 A 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 A 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 A 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 A 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 A 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 A 186 ALA ARG GLU PHE SEQRES 1 B 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 B 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 B 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 B 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 B 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 B 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 B 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 B 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 B 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 B 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 B 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 B 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 B 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 B 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 B 186 ALA ARG GLU PHE SEQRES 1 C 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 C 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 C 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 C 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 C 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 C 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 C 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 C 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 C 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 C 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 C 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 C 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 C 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 C 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 C 186 ALA ARG GLU PHE SEQRES 1 D 186 SER GLY SER MET THR SER SER ASN ARG ILE THR SER PRO SEQRES 2 D 186 ALA MET THR ALA SER LYS THR ALA ALA VAL ALA LYS PRO SEQRES 3 D 186 THR ARG ALA GLY ARG LYS ALA PRO ALA VAL GLU THR ALA SEQRES 4 D 186 PRO GLU ALA SER GLU LEU LYS MET GLY GLU LEU SER GLU SEQRES 5 D 186 LEU LEU GLY TYR ALA LEU LYS ARG ALA GLN LEU ARG VAL SEQRES 6 D 186 PHE GLU ASP PHE LEU HIS CYS VAL ALA PRO VAL GLN LEU SEQRES 7 D 186 THR PRO ALA GLN PHE SER VAL LEU LEU LEU LEU ASP ALA SEQRES 8 D 186 ASN PRO GLY ARG ASN GLN THR GLU ILE ALA THR THR LEU SEQRES 9 D 186 GLY ILE LEU ARG PRO ASN PHE VAL ALA MET LEU ASP ALA SEQRES 10 D 186 LEU GLU GLY ARG GLY LEU CYS VAL ARG THR ARG SER PRO SEQRES 11 D 186 SER ASP ARG ARG SER HIS ILE LEU MET LEU THR ASP LYS SEQRES 12 D 186 GLY ARG ALA THR LEU ALA ARG ALA LYS LYS LEU VAL ALA SEQRES 13 D 186 THR ARG HIS GLU ASP ARG LEU THR GLU LEU LEU GLY ARG SEQRES 14 D 186 ASP ASN ARG ASP ALA LEU LEU SER MET LEU ALA THR ILE SEQRES 15 D 186 ALA ARG GLU PHE HET WCA A 201 59 HET WCA B 201 59 HET WCA C 201 59 HET WCA D 201 59 HETNAM WCA P-COUMAROYL-COA FORMUL 5 WCA 4(C30 H42 N7 O18 P3 S) FORMUL 9 HOH *235(H2 O) HELIX 1 AA1 MET A 44 GLU A 49 5 6 HELIX 2 AA2 LEU A 50 ALA A 71 1 22 HELIX 3 AA3 PRO A 72 GLN A 74 5 3 HELIX 4 AA4 THR A 76 ASN A 89 1 14 HELIX 5 AA5 ASN A 93 GLY A 102 1 10 HELIX 6 AA6 LEU A 104 ARG A 118 1 15 HELIX 7 AA7 THR A 138 HIS A 156 1 19 HELIX 8 AA8 HIS A 156 LEU A 164 1 9 HELIX 9 AA9 GLY A 165 PHE A 183 1 19 HELIX 10 AB1 MET B 44 GLU B 49 5 6 HELIX 11 AB2 LEU B 50 VAL B 70 1 21 HELIX 12 AB3 ALA B 71 GLN B 74 5 4 HELIX 13 AB4 THR B 76 ASN B 89 1 14 HELIX 14 AB5 ASN B 93 GLY B 102 1 10 HELIX 15 AB6 LEU B 104 ARG B 118 1 15 HELIX 16 AB7 THR B 138 HIS B 156 1 19 HELIX 17 AB8 HIS B 156 GLY B 165 1 10 HELIX 18 AB9 GLY B 165 PHE B 183 1 19 HELIX 19 AC1 MET C 44 GLU C 49 5 6 HELIX 20 AC2 LEU C 50 VAL C 70 1 21 HELIX 21 AC3 THR C 76 ASN C 89 1 14 HELIX 22 AC4 ASN C 93 GLY C 102 1 10 HELIX 23 AC5 LEU C 104 ARG C 118 1 15 HELIX 24 AC6 THR C 138 HIS C 156 1 19 HELIX 25 AC7 HIS C 156 LEU C 164 1 9 HELIX 26 AC8 GLY C 165 PHE C 183 1 19 HELIX 27 AC9 MET D 44 GLU D 49 5 6 HELIX 28 AD1 LEU D 50 ALA D 71 1 22 HELIX 29 AD2 PRO D 72 GLN D 74 5 3 HELIX 30 AD3 THR D 76 ASN D 89 1 14 HELIX 31 AD4 ASN D 93 GLY D 102 1 10 HELIX 32 AD5 LEU D 104 ARG D 118 1 15 HELIX 33 AD6 THR D 138 HIS D 156 1 19 HELIX 34 AD7 HIS D 156 GLY D 165 1 10 HELIX 35 AD8 GLY D 165 PHE D 183 1 19 SHEET 1 AA1 2 CYS A 121 ARG A 125 0 SHEET 2 AA1 2 HIS A 133 LEU A 137 -1 O ILE A 134 N THR A 124 SHEET 1 AA2 2 CYS B 121 ARG B 123 0 SHEET 2 AA2 2 LEU B 135 LEU B 137 -1 O MET B 136 N VAL B 122 SHEET 1 AA3 2 CYS C 121 ARG C 123 0 SHEET 2 AA3 2 LEU C 135 LEU C 137 -1 O MET C 136 N VAL C 122 SHEET 1 AA4 2 CYS D 121 VAL D 122 0 SHEET 2 AA4 2 MET D 136 LEU D 137 -1 O MET D 136 N VAL D 122 SITE 1 AC1 23 PHE A 63 PHE A 66 THR A 76 PRO A 77 SITE 2 AC1 23 ALA A 78 SER A 81 LEU A 101 GLY A 102 SITE 3 AC1 23 ILE A 103 ASN A 107 ALA A 110 VAL A 152 SITE 4 AC1 23 HOH A 304 HOH A 305 HOH A 308 HOH A 309 SITE 5 AC1 23 LYS C 140 LEU D 50 GLY D 52 TYR D 53 SITE 6 AC1 23 LYS D 56 LEU D 60 WCA D 201 SITE 1 AC2 16 PHE B 63 THR B 76 PRO B 77 ALA B 78 SITE 2 AC2 16 SER B 81 LEU B 101 GLY B 102 ILE B 103 SITE 3 AC2 16 ASN B 107 HOH B 302 HOH B 314 HOH B 332 SITE 4 AC2 16 HOH B 337 HOH B 339 HOH B 348 LYS D 140 SITE 1 AC3 15 LYS A 140 PHE C 63 PHE C 66 THR C 76 SITE 2 AC3 15 PRO C 77 ALA C 78 SER C 81 LEU C 101 SITE 3 AC3 15 GLY C 102 ASN C 107 HOH C 301 HOH C 304 SITE 4 AC3 15 HOH C 319 HOH C 334 HOH C 346 SITE 1 AC4 24 LEU A 50 GLY A 52 TYR A 53 LYS A 56 SITE 2 AC4 24 LEU A 60 ASN A 107 WCA A 201 HOH A 318 SITE 3 AC4 24 LYS B 140 PHE D 63 PHE D 66 THR D 76 SITE 4 AC4 24 PRO D 77 ALA D 78 SER D 81 LEU D 101 SITE 5 AC4 24 GLY D 102 ASN D 107 HOH D 310 HOH D 320 SITE 6 AC4 24 HOH D 321 HOH D 324 HOH D 326 HOH D 333 CRYST1 53.854 104.006 128.801 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007764 0.00000