data_6C51 # _entry.id 6C51 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6C51 WWPDB D_1000232047 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6C51 _pdbx_database_status.recvd_initial_deposition_date 2018-01-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, L.' 1 ? 'Zhang, S.Q.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 870 _citation.page_last 875 _citation.title 'Designed peptides that assemble into cross-alpha amyloid-like structures.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0105-5 _citation.pdbx_database_id_PubMed 30061717 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, S.Q.' 1 0000-0001-5853-592X primary 'Huang, H.' 2 0000-0003-2331-6238 primary 'Yang, J.' 3 0000-0003-4844-2492 primary 'Kratochvil, H.T.' 4 0000-0001-8039-6823 primary 'Lolicato, M.' 5 0000-0002-2022-7961 primary 'Liu, Y.' 6 0000-0002-2253-3698 primary 'Shu, X.' 7 ? primary 'Liu, L.' 8 0000-0003-0514-281X primary 'DeGrado, W.F.' 9 0000-0003-4745-263X # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6C51 _cell.details ? _cell.formula_units_Z ? _cell.length_a 53.210 _cell.length_a_esd ? _cell.length_b 53.210 _cell.length_b_esd ? _cell.length_c 134.775 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 48 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cross-alpha Amyloid-like Structure alphaAmL' 2974.649 4 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 6 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 15 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)SKLLELLRKLLEALHKAIELLEKWG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XSKLLELLRKLLEALHKAIELLEKWGX _entity_poly.pdbx_strand_id A,C,B,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 LYS n 1 4 LEU n 1 5 LEU n 1 6 GLU n 1 7 LEU n 1 8 LEU n 1 9 ARG n 1 10 LYS n 1 11 LEU n 1 12 LEU n 1 13 GLU n 1 14 ALA n 1 15 LEU n 1 16 HIS n 1 17 LYS n 1 18 ALA n 1 19 ILE n 1 20 GLU n 1 21 LEU n 1 22 LEU n 1 23 GLU n 1 24 LYS n 1 25 TRP n 1 26 GLY n 1 27 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6C51 _struct_ref.pdbx_db_accession 6C51 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6C51 A 1 ? 27 ? 6C51 0 ? 26 ? 0 26 2 1 6C51 C 1 ? 27 ? 6C51 0 ? 26 ? 0 26 3 1 6C51 B 1 ? 27 ? 6C51 0 ? 26 ? 0 26 4 1 6C51 D 1 ? 27 ? 6C51 0 ? 26 ? 0 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6C51 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '45% MPD, 0.6 M NaH2PO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11584 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.11584 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6C51 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 46.3 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14468 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.45 _refine.aniso_B[1][2] -0.23 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.45 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 1.47 _refine.B_iso_max ? _refine.B_iso_mean 53.599 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6C51 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 46.08 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7841 _refine.ls_number_reflns_R_free 409 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.93 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.23659 _refine.ls_R_factor_R_free 0.26186 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.23530 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.215 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 8.941 _refine.overall_SU_ML 0.115 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 812 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 865 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 46.08 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.019 861 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 942 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.954 2.124 1157 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.769 3.000 2170 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 3.822 5.000 99 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 23.701 21.481 27 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.824 15.000 194 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 10.392 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.041 0.200 142 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 840 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 139 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 1.211 4.094 404 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.212 4.088 403 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.082 6.082 497 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.080 6.089 498 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.093 4.681 457 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.092 4.689 458 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.813 6.998 659 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.321 74.104 3052 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.320 74.116 3053 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.998 _refine_ls_shell.d_res_low 2.050 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_R_work 571 _refine_ls_shell.percent_reflns_obs 99.66 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.236 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6C51 _struct.title 'Cross-alpha Amyloid-like Structure alphaAmL' _struct.pdbx_descriptor 'Cross-alpha Amyloid-like Structure alphaAmL' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6C51 _struct_keywords.text 'Protein Design, Cross-alpha Amyloid, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 2 ? TRP A 25 ? SER A 1 TRP A 24 1 ? 24 HELX_P HELX_P2 AA2 SER B 2 ? TRP B 25 ? SER C 1 TRP C 24 1 ? 24 HELX_P HELX_P3 AA3 SER C 2 ? TRP C 25 ? SER B 1 TRP B 24 1 ? 24 HELX_P HELX_P4 AA4 SER D 2 ? TRP D 25 ? SER D 1 TRP D 24 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 0 A SER 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale both ? A GLY 26 C ? ? ? 1_555 A NH2 27 N ? ? A GLY 25 A NH2 26 1_555 ? ? ? ? ? ? ? 1.230 ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B SER 2 N ? ? C ACE 0 C SER 1 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale both ? B GLY 26 C ? ? ? 1_555 B NH2 27 N ? ? C GLY 25 C NH2 26 1_555 ? ? ? ? ? ? ? 1.231 ? covale5 covale both ? C ACE 1 C ? ? ? 1_555 C SER 2 N ? ? B ACE 0 B SER 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? C GLY 26 C ? ? ? 1_555 C NH2 27 N ? ? B GLY 25 B NH2 26 1_555 ? ? ? ? ? ? ? 1.232 ? covale7 covale both ? D ACE 1 C ? ? ? 1_555 D SER 2 N ? ? D ACE 0 D SER 1 1_555 ? ? ? ? ? ? ? 1.340 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 101 ? 6 'binding site for residue PO4 A 101' AC2 Software A PO4 102 ? 6 'binding site for residue PO4 A 102' AC3 Software A PO4 103 ? 8 'binding site for residue PO4 A 103' AC4 Software B PO4 101 ? 5 'binding site for residue PO4 B 101' AC5 Software D PO4 101 ? 6 'binding site for residue PO4 D 101' AC6 Software D PO4 102 ? 8 'binding site for residue PO4 D 102' AC7 Software D MPD 103 ? 6 'binding site for residue MPD D 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 2 ? SER A 1 . ? 1_555 ? 2 AC1 6 LYS A 3 ? LYS A 2 . ? 1_555 ? 3 AC1 6 LEU A 21 ? LEU A 20 . ? 12_544 ? 4 AC1 6 LYS A 24 ? LYS A 23 . ? 12_544 ? 5 AC1 6 TRP A 25 ? TRP A 24 . ? 12_544 ? 6 AC1 6 HOH L . ? HOH A 202 . ? 1_555 ? 7 AC2 6 LEU A 12 ? LEU A 11 . ? 1_555 ? 8 AC2 6 LEU A 15 ? LEU A 14 . ? 1_555 ? 9 AC2 6 HIS A 16 ? HIS A 15 . ? 1_555 ? 10 AC2 6 LEU B 5 ? LEU C 4 . ? 1_555 ? 11 AC2 6 GLU B 6 ? GLU C 5 . ? 1_555 ? 12 AC2 6 ARG B 9 ? ARG C 8 . ? 1_555 ? 13 AC3 8 SER A 2 ? SER A 1 . ? 1_555 ? 14 AC3 8 LEU A 5 ? LEU A 4 . ? 1_555 ? 15 AC3 8 GLU A 6 ? GLU A 5 . ? 1_555 ? 16 AC3 8 ARG A 9 ? ARG A 8 . ? 1_555 ? 17 AC3 8 HOH L . ? HOH A 201 . ? 1_555 ? 18 AC3 8 LEU B 12 ? LEU C 11 . ? 1_555 ? 19 AC3 8 LEU B 15 ? LEU C 14 . ? 1_555 ? 20 AC3 8 HIS B 16 ? HIS C 15 . ? 1_555 ? 21 AC4 5 LYS A 3 ? LYS A 2 . ? 7_544 ? 22 AC4 5 HIS C 16 ? HIS B 15 . ? 1_555 ? 23 AC4 5 LYS C 17 ? LYS B 16 . ? 1_555 ? 24 AC4 5 GLU C 20 ? GLU B 19 . ? 1_555 ? 25 AC4 5 HOH N . ? HOH B 201 . ? 1_555 ? 26 AC5 6 HIS A 16 ? HIS A 15 . ? 7_644 ? 27 AC5 6 LYS C 24 ? LYS B 23 . ? 11_654 ? 28 AC5 6 ARG B 9 ? ARG C 8 . ? 7_644 ? 29 AC5 6 LYS B 10 ? LYS C 9 . ? 7_644 ? 30 AC5 6 LYS D 17 ? LYS D 16 . ? 1_555 ? 31 AC5 6 HOH O . ? HOH D 201 . ? 1_555 ? 32 AC6 8 GLY C 26 ? GLY B 25 . ? 1_555 ? 33 AC6 8 GLY C 26 ? GLY B 25 . ? 11_654 ? 34 AC6 8 HIS D 16 ? HIS D 15 . ? 1_555 ? 35 AC6 8 HIS D 16 ? HIS D 15 . ? 11_654 ? 36 AC6 8 GLU D 20 ? GLU D 19 . ? 1_555 ? 37 AC6 8 GLU D 20 ? GLU D 19 . ? 11_654 ? 38 AC6 8 GLU D 23 ? GLU D 22 . ? 1_555 ? 39 AC6 8 GLU D 23 ? GLU D 22 . ? 11_654 ? 40 AC7 6 LYS C 24 ? LYS B 23 . ? 11_654 ? 41 AC7 6 LYS B 10 ? LYS C 9 . ? 7_644 ? 42 AC7 6 ARG D 9 ? ARG D 8 . ? 1_555 ? 43 AC7 6 LYS D 10 ? LYS D 9 . ? 1_555 ? 44 AC7 6 GLU D 13 ? GLU D 12 . ? 1_555 ? 45 AC7 6 HOH O . ? HOH D 201 . ? 1_555 ? # _atom_sites.entry_id 6C51 _atom_sites.fract_transf_matrix[1][1] 0.018793 _atom_sites.fract_transf_matrix[1][2] 0.010850 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021701 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007420 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 LYS 10 9 9 LYS LYS A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 LEU 21 20 20 LEU LEU A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 TRP 25 24 24 TRP TRP A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 NH2 27 26 26 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE C . n B 1 2 SER 2 1 1 SER SER C . n B 1 3 LYS 3 2 2 LYS LYS C . n B 1 4 LEU 4 3 3 LEU LEU C . n B 1 5 LEU 5 4 4 LEU LEU C . n B 1 6 GLU 6 5 5 GLU GLU C . n B 1 7 LEU 7 6 6 LEU LEU C . n B 1 8 LEU 8 7 7 LEU LEU C . n B 1 9 ARG 9 8 8 ARG ARG C . n B 1 10 LYS 10 9 9 LYS LYS C . n B 1 11 LEU 11 10 10 LEU LEU C . n B 1 12 LEU 12 11 11 LEU LEU C . n B 1 13 GLU 13 12 12 GLU GLU C . n B 1 14 ALA 14 13 13 ALA ALA C . n B 1 15 LEU 15 14 14 LEU LEU C . n B 1 16 HIS 16 15 15 HIS HIS C . n B 1 17 LYS 17 16 16 LYS LYS C . n B 1 18 ALA 18 17 17 ALA ALA C . n B 1 19 ILE 19 18 18 ILE ILE C . n B 1 20 GLU 20 19 19 GLU GLU C . n B 1 21 LEU 21 20 20 LEU LEU C . n B 1 22 LEU 22 21 21 LEU LEU C . n B 1 23 GLU 23 22 22 GLU GLU C . n B 1 24 LYS 24 23 23 LYS LYS C . n B 1 25 TRP 25 24 24 TRP TRP C . n B 1 26 GLY 26 25 25 GLY GLY C . n B 1 27 NH2 27 26 26 NH2 NH2 C . n C 1 1 ACE 1 0 0 ACE ACE B . n C 1 2 SER 2 1 1 SER SER B . n C 1 3 LYS 3 2 2 LYS LYS B . n C 1 4 LEU 4 3 3 LEU LEU B . n C 1 5 LEU 5 4 4 LEU LEU B . n C 1 6 GLU 6 5 5 GLU GLU B . n C 1 7 LEU 7 6 6 LEU LEU B . n C 1 8 LEU 8 7 7 LEU LEU B . n C 1 9 ARG 9 8 8 ARG ARG B . n C 1 10 LYS 10 9 9 LYS LYS B . n C 1 11 LEU 11 10 10 LEU LEU B . n C 1 12 LEU 12 11 11 LEU LEU B . n C 1 13 GLU 13 12 12 GLU GLU B . n C 1 14 ALA 14 13 13 ALA ALA B . n C 1 15 LEU 15 14 14 LEU LEU B . n C 1 16 HIS 16 15 15 HIS HIS B . n C 1 17 LYS 17 16 16 LYS LYS B . n C 1 18 ALA 18 17 17 ALA ALA B . n C 1 19 ILE 19 18 18 ILE ILE B . n C 1 20 GLU 20 19 19 GLU GLU B . n C 1 21 LEU 21 20 20 LEU LEU B . n C 1 22 LEU 22 21 21 LEU LEU B . n C 1 23 GLU 23 22 22 GLU GLU B . n C 1 24 LYS 24 23 23 LYS LYS B . n C 1 25 TRP 25 24 24 TRP TRP B . n C 1 26 GLY 26 25 25 GLY GLY B . n C 1 27 NH2 27 26 26 NH2 NH2 B . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 SER 2 1 1 SER SER D . n D 1 3 LYS 3 2 2 LYS LYS D . n D 1 4 LEU 4 3 3 LEU LEU D . n D 1 5 LEU 5 4 4 LEU LEU D . n D 1 6 GLU 6 5 5 GLU GLU D . n D 1 7 LEU 7 6 6 LEU LEU D . n D 1 8 LEU 8 7 7 LEU LEU D . n D 1 9 ARG 9 8 8 ARG ARG D . n D 1 10 LYS 10 9 9 LYS LYS D . n D 1 11 LEU 11 10 10 LEU LEU D . n D 1 12 LEU 12 11 11 LEU LEU D . n D 1 13 GLU 13 12 12 GLU GLU D . n D 1 14 ALA 14 13 13 ALA ALA D . n D 1 15 LEU 15 14 14 LEU LEU D . n D 1 16 HIS 16 15 15 HIS HIS D . n D 1 17 LYS 17 16 16 LYS LYS D . n D 1 18 ALA 18 17 17 ALA ALA D . n D 1 19 ILE 19 18 18 ILE ILE D . n D 1 20 GLU 20 19 19 GLU GLU D . n D 1 21 LEU 21 20 20 LEU LEU D . n D 1 22 LEU 22 21 21 LEU LEU D . n D 1 23 GLU 23 22 22 GLU GLU D . n D 1 24 LYS 24 23 23 LYS LYS D . n D 1 25 TRP 25 24 24 TRP TRP D . n D 1 26 GLY 26 25 ? ? ? D . n D 1 27 NH2 27 26 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 1 101 1 PO4 PO4 A . F 2 PO4 1 102 2 PO4 PO4 A . G 2 PO4 1 103 3 PO4 PO4 A . H 2 PO4 1 101 4 PO4 PO4 B . I 2 PO4 1 101 5 PO4 PO4 D . J 2 PO4 1 102 6 PO4 PO4 D . K 3 MPD 1 103 1 MPD MPD D . L 4 HOH 1 201 12 HOH HOH A . L 4 HOH 2 202 11 HOH HOH A . L 4 HOH 3 203 4 HOH HOH A . L 4 HOH 4 204 1 HOH HOH A . M 4 HOH 1 101 2 HOH HOH C . M 4 HOH 2 102 9 HOH HOH C . M 4 HOH 3 103 5 HOH HOH C . M 4 HOH 4 104 3 HOH HOH C . N 4 HOH 1 201 6 HOH HOH B . N 4 HOH 2 202 14 HOH HOH B . O 4 HOH 1 201 10 HOH HOH D . O 4 HOH 2 202 13 HOH HOH D . O 4 HOH 3 203 8 HOH HOH D . O 4 HOH 4 204 7 HOH HOH D . O 4 HOH 5 205 15 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5540 ? 1 MORE -81 ? 1 'SSA (A^2)' 7580 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 D PO4 102 ? J PO4 . 2 1 D HOH 204 ? O HOH . 3 1 D HOH 205 ? O HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-15 2 'Structure model' 1 1 2018-08-29 3 'Structure model' 1 2 2019-12-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 27.0201 -20.8064 -10.1939 0.0140 0.0228 0.0350 -0.0056 0.0099 -0.0236 3.6140 5.9465 13.5028 -0.1718 0.5708 -5.8709 0.0789 -0.0561 -0.0805 0.0316 -0.0859 0.0333 0.2426 0.1832 0.0070 'X-RAY DIFFRACTION' 2 ? refined 36.6969 -17.7437 -18.7790 0.0466 0.0756 0.0332 0.0348 0.0147 -0.0144 5.6458 12.2273 3.9662 5.3684 -0.9995 -3.0989 -0.0684 -0.0232 0.0752 0.0570 -0.0047 -0.1324 -0.0524 0.0130 0.0731 'X-RAY DIFFRACTION' 3 ? refined 18.7071 -24.5746 -14.7086 0.0537 0.0332 0.1430 -0.0260 -0.0034 -0.0276 2.3206 2.2596 8.0141 0.1968 -0.6694 -0.5862 0.0390 0.1010 -0.2092 -0.1162 -0.0023 0.1927 0.1644 -0.1598 -0.0367 'X-RAY DIFFRACTION' 4 ? refined 36.5994 -21.6747 -28.4739 0.0955 0.0688 0.0427 0.0601 0.0349 0.0002 7.5718 7.6487 2.7434 5.1244 -0.1321 -0.3489 0.0305 0.2321 0.0908 -0.0795 -0.0076 0.1940 0.0225 -0.0793 -0.0229 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 0 ? ? A 26 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 0 ? ? B 26 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 0 ? ? C 26 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 D 0 ? ? D 24 ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 23 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -67.09 _pdbx_validate_torsion.psi -73.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 5 ? CD ? A GLU 6 CD 2 1 Y 1 A GLU 5 ? OE1 ? A GLU 6 OE1 3 1 Y 1 A GLU 5 ? OE2 ? A GLU 6 OE2 4 1 Y 1 B GLU 5 ? CG ? C GLU 6 CG 5 1 Y 1 B GLU 5 ? CD ? C GLU 6 CD 6 1 Y 1 B GLU 5 ? OE1 ? C GLU 6 OE1 7 1 Y 1 B GLU 5 ? OE2 ? C GLU 6 OE2 8 1 Y 1 B ARG 8 ? CD ? C ARG 9 CD 9 1 Y 1 B ARG 8 ? NE ? C ARG 9 NE 10 1 Y 1 B ARG 8 ? CZ ? C ARG 9 CZ 11 1 Y 1 B ARG 8 ? NH1 ? C ARG 9 NH1 12 1 Y 1 B ARG 8 ? NH2 ? C ARG 9 NH2 13 1 Y 1 D LYS 2 ? CD ? D LYS 3 CD 14 1 Y 1 D LYS 2 ? CE ? D LYS 3 CE 15 1 Y 1 D LYS 2 ? NZ ? D LYS 3 NZ 16 1 Y 1 D GLU 5 ? CD ? D GLU 6 CD 17 1 Y 1 D GLU 5 ? OE1 ? D GLU 6 OE1 18 1 Y 1 D GLU 5 ? OE2 ? D GLU 6 OE2 19 1 Y 1 D TRP 24 ? CG ? D TRP 25 CG 20 1 Y 1 D TRP 24 ? CD1 ? D TRP 25 CD1 21 1 Y 1 D TRP 24 ? CD2 ? D TRP 25 CD2 22 1 Y 1 D TRP 24 ? NE1 ? D TRP 25 NE1 23 1 Y 1 D TRP 24 ? CE2 ? D TRP 25 CE2 24 1 Y 1 D TRP 24 ? CE3 ? D TRP 25 CE3 25 1 Y 1 D TRP 24 ? CZ2 ? D TRP 25 CZ2 26 1 Y 1 D TRP 24 ? CZ3 ? D TRP 25 CZ3 27 1 Y 1 D TRP 24 ? CH2 ? D TRP 25 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D GLY 25 ? D GLY 26 2 1 Y 1 D NH2 26 ? D NH2 27 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R35GM122603 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #