HEADER OXIDOREDUCTASE 16-JAN-18 6C5N TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS KETOL-ACID REDUCTOISOMERASE TITLE 2 WITH HYDROXYOXAMATE INHIBITOR 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE (NADP(+)); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KARI,ACETOHYDROXY-ACID ISOMEROREDUCTASE,AHIR,ALPHA-KETO- COMPND 5 BETA-HYDROXYLACYL REDUCTOISOMERASE,KETOL-ACID REDUCTOISOMERASE TYPE COMPND 6 1,KETOL-ACID REDUCTOISOMERASE TYPE I; COMPND 7 EC: 1.1.1.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN BOVINE RF122 / SOURCE 3 ET3-1); SOURCE 4 ORGANISM_TAXID: 273036; SOURCE 5 STRAIN: BOVINE RF122 / ET3-1; SOURCE 6 GENE: ILVC, SAB1941; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS KETOL-ACID REDUCTOISOMERASE, ISOMERASE, INHIBITOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KANDALE,K.M.PATEL,S.ZHENG,L.YOU,L.W.GUDDAT,G.SCHENK,M.A.SCHEMBRI, AUTHOR 2 R.P.MCGEARY REVDAT 3 04-OCT-23 6C5N 1 LINK REVDAT 2 08-JAN-20 6C5N 1 REMARK REVDAT 1 30-JAN-19 6C5N 0 JRNL AUTH A.KANDALE,K.M.PATEL,S.ZHENG,L.YOU,L.W.GUDDAT,G.SCHENK, JRNL AUTH 2 M.A.SCHEMBRI,R.P.MCGEARY JRNL TITL DESIGN, SYNTHESIS, IN VITRO ACTIVITY AND CRYSTALLISATION OF JRNL TITL 2 NOVEL N-ISOPROPYL-N-HYDROXYOXAMATE DERIVATIVES AS KETOL-ACID JRNL TITL 3 REDUCTOSIOMERASE (KARI) INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 79149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.560 REMARK 3 FREE R VALUE TEST SET COUNT : 2025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6306 - 4.0307 1.00 5603 155 0.1340 0.1438 REMARK 3 2 4.0307 - 3.1995 1.00 5562 136 0.1333 0.1610 REMARK 3 3 3.1995 - 2.7951 1.00 5540 143 0.1502 0.1941 REMARK 3 4 2.7951 - 2.5396 1.00 5562 135 0.1562 0.2045 REMARK 3 5 2.5396 - 2.3576 1.00 5500 140 0.1583 0.2035 REMARK 3 6 2.3576 - 2.2186 1.00 5515 144 0.1566 0.2069 REMARK 3 7 2.2186 - 2.1075 1.00 5494 139 0.1556 0.2161 REMARK 3 8 2.1075 - 2.0157 1.00 5456 150 0.1613 0.1935 REMARK 3 9 2.0157 - 1.9381 1.00 5531 151 0.1629 0.1967 REMARK 3 10 1.9381 - 1.8712 1.00 5473 140 0.1774 0.2552 REMARK 3 11 1.8712 - 1.8127 1.00 5537 145 0.1911 0.2612 REMARK 3 12 1.8127 - 1.7609 1.00 5474 140 0.2003 0.2300 REMARK 3 13 1.7609 - 1.7146 1.00 5504 152 0.1989 0.2554 REMARK 3 14 1.7146 - 1.6727 0.98 5373 155 0.2024 0.2303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5491 REMARK 3 ANGLE : 1.185 7456 REMARK 3 CHIRALITY : 0.086 795 REMARK 3 PLANARITY : 0.007 995 REMARK 3 DIHEDRAL : 5.506 4425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79180 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 46.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5W3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH8 17.5% PEG 8000, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.19700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 328 REMARK 465 SER A 329 REMARK 465 LYS A 330 REMARK 465 SER A 331 REMARK 465 ILE A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 LYS B 328 REMARK 465 SER B 329 REMARK 465 LYS B 330 REMARK 465 SER B 331 REMARK 465 ILE B 332 REMARK 465 GLU B 333 REMARK 465 LYS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 508 O HOH A 576 2.00 REMARK 500 O HOH A 795 O HOH B 793 2.06 REMARK 500 O HOH A 598 O HOH A 847 2.07 REMARK 500 O HOH A 603 O HOH A 795 2.07 REMARK 500 O HOH B 797 O HOH B 799 2.10 REMARK 500 O HOH A 782 O HOH A 817 2.11 REMARK 500 O HOH B 603 O HOH B 892 2.11 REMARK 500 O HOH B 773 O HOH B 779 2.11 REMARK 500 O HOH A 548 O HOH A 832 2.12 REMARK 500 O HOH B 746 O HOH B 756 2.12 REMARK 500 O HOH B 517 O HOH B 553 2.12 REMARK 500 O HOH B 539 O HOH B 796 2.13 REMARK 500 O HOH A 842 O HOH A 881 2.14 REMARK 500 O HOH B 570 O HOH B 877 2.15 REMARK 500 O HOH A 785 O HOH A 791 2.15 REMARK 500 OE2 GLU B 92 O HOH B 502 2.17 REMARK 500 O HOH B 741 O HOH B 801 2.17 REMARK 500 O HOH B 782 O HOH B 823 2.17 REMARK 500 O HOH B 751 O HOH B 849 2.17 REMARK 500 O HOH B 763 O HOH B 860 2.17 REMARK 500 O HOH A 725 O HOH A 840 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 126 CA - CB - CG ANGL. DEV. = 21.1 DEGREES REMARK 500 LEU B 205 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 56.82 -149.13 REMARK 500 SER A 144 -153.24 -97.69 REMARK 500 VAL A 197 -61.06 -131.72 REMARK 500 ILE B 93 -61.30 -96.20 REMARK 500 ILE B 93 -61.30 -91.89 REMARK 500 SER B 144 -150.21 -106.10 REMARK 500 VAL B 197 -59.59 -128.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 GLU A 194 OE2 89.8 REMARK 620 3 EN4 A 404 O01 169.7 82.2 REMARK 620 4 EN4 A 404 O11 95.8 91.9 78.2 REMARK 620 5 81B A 405 O10 92.5 83.0 80.2 9.4 REMARK 620 6 81B A 405 O11 170.5 92.4 10.6 74.9 78.6 REMARK 620 7 HOH A 557 O 96.6 89.9 89.8 167.5 168.5 92.7 REMARK 620 8 HOH A 706 O 91.4 178.0 96.5 86.4 95.3 86.3 91.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 EN4 A 404 O05 165.7 REMARK 620 3 EN4 A 404 O11 95.6 78.0 REMARK 620 4 81B A 405 O10 95.0 76.6 9.4 REMARK 620 5 HOH A 501 O 149.3 45.1 97.5 102.3 REMARK 620 6 HOH A 595 O 84.3 108.0 88.4 97.7 68.4 REMARK 620 7 HOH B 549 O 92.4 94.8 171.5 170.1 74.1 89.6 REMARK 620 8 HOH B 597 O 84.7 83.1 94.4 85.0 121.7 168.9 89.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 527 O REMARK 620 2 ASP B 190 OD1 91.4 REMARK 620 3 EN4 B 401 O05 97.7 156.3 REMARK 620 4 EN4 B 401 O11 173.7 93.5 76.3 REMARK 620 5 81B B 402 O10 172.8 94.7 75.3 1.2 REMARK 620 6 HOH B 501 O 85.5 155.9 47.4 91.7 90.5 REMARK 620 7 HOH B 519 O 87.5 89.0 69.7 88.6 88.8 114.7 REMARK 620 8 HOH B 575 O 91.9 80.3 121.0 92.9 92.9 76.0 169.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 190 OD2 REMARK 620 2 GLU B 194 OE2 91.8 REMARK 620 3 EN4 B 401 O11 97.2 87.7 REMARK 620 4 EN4 B 401 O12 174.6 89.1 77.5 REMARK 620 5 81B B 402 O01 173.6 86.4 76.6 2.8 REMARK 620 6 81B B 402 O10 96.6 87.4 0.7 78.1 77.2 REMARK 620 7 HOH B 571 O 96.7 91.4 166.1 88.7 89.6 166.8 REMARK 620 8 HOH B 697 O 88.1 179.8 92.3 91.1 93.8 92.7 88.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EN4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 81B A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EN4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 81B B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 406 DBREF 6C5N A 2 334 UNP Q2YUF3 ILVC_STAAB 2 334 DBREF 6C5N B 2 334 UNP Q2YUF3 ILVC_STAAB 2 334 SEQADV 6C5N HIS A 335 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS A 336 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS A 337 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS A 338 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS A 339 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS A 340 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS B 335 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS B 336 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS B 337 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS B 338 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS B 339 UNP Q2YUF3 EXPRESSION TAG SEQADV 6C5N HIS B 340 UNP Q2YUF3 EXPRESSION TAG SEQRES 1 A 339 THR THR VAL TYR TYR ASP GLN ASP VAL LYS THR ASP ALA SEQRES 2 A 339 LEU GLN GLY LYS LYS ILE ALA VAL VAL GLY TYR GLY SER SEQRES 3 A 339 GLN GLY HIS ALA HIS ALA GLN ASN LEU LYS ASP ASN GLY SEQRES 4 A 339 TYR ASP VAL VAL ILE GLY ILE ARG PRO GLY ARG SER PHE SEQRES 5 A 339 ASP LYS ALA LYS GLU ASP GLY PHE ASP VAL PHE PRO VAL SEQRES 6 A 339 ALA GLU ALA VAL LYS GLN ALA ASP VAL ILE MET VAL LEU SEQRES 7 A 339 LEU PRO ASP GLU ILE GLN GLY ASP VAL TYR LYS ASN GLU SEQRES 8 A 339 ILE GLU PRO ASN LEU GLU LYS HIS ASN ALA LEU ALA PHE SEQRES 9 A 339 ALA HIS GLY PHE ASN ILE HIS PHE GLY VAL ILE GLN PRO SEQRES 10 A 339 PRO ALA ASP VAL ASP VAL PHE LEU VAL ALA PRO LYS GLY SEQRES 11 A 339 PRO GLY HIS LEU VAL ARG ARG THR PHE VAL GLU GLY SER SEQRES 12 A 339 ALA VAL PRO SER LEU PHE GLY ILE GLN GLN ASP ALA SER SEQRES 13 A 339 GLY GLN ALA ARG ASN ILE ALA LEU SER TYR ALA LYS GLY SEQRES 14 A 339 ILE GLY ALA THR ARG ALA GLY VAL ILE GLU THR THR PHE SEQRES 15 A 339 LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN ALA SEQRES 16 A 339 VAL LEU CYS GLY GLY VAL SER LYS LEU ILE GLN SER GLY SEQRES 17 A 339 PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU LEU SEQRES 18 A 339 ALA TYR PHE GLU VAL LEU HIS GLU MET LYS LEU ILE VAL SEQRES 19 A 339 ASP LEU MET TYR GLU GLY GLY MET GLU ASN VAL ARG TYR SEQRES 20 A 339 SER ILE SER ASN THR ALA GLU PHE GLY ASP TYR VAL SER SEQRES 21 A 339 GLY PRO ARG VAL ILE THR PRO ASP VAL LYS GLU ASN MET SEQRES 22 A 339 LYS ALA VAL LEU THR ASP ILE GLN ASN GLY ASN PHE SER SEQRES 23 A 339 ASN ARG PHE ILE GLU ASP ASN LYS ASN GLY PHE LYS GLU SEQRES 24 A 339 PHE TYR LYS LEU ARG GLU GLU GLN HIS GLY HIS GLN ILE SEQRES 25 A 339 GLU LYS VAL GLY ARG GLU LEU ARG GLU MET MET PRO PHE SEQRES 26 A 339 ILE LYS SER LYS SER ILE GLU LYS HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS SEQRES 1 B 339 THR THR VAL TYR TYR ASP GLN ASP VAL LYS THR ASP ALA SEQRES 2 B 339 LEU GLN GLY LYS LYS ILE ALA VAL VAL GLY TYR GLY SER SEQRES 3 B 339 GLN GLY HIS ALA HIS ALA GLN ASN LEU LYS ASP ASN GLY SEQRES 4 B 339 TYR ASP VAL VAL ILE GLY ILE ARG PRO GLY ARG SER PHE SEQRES 5 B 339 ASP LYS ALA LYS GLU ASP GLY PHE ASP VAL PHE PRO VAL SEQRES 6 B 339 ALA GLU ALA VAL LYS GLN ALA ASP VAL ILE MET VAL LEU SEQRES 7 B 339 LEU PRO ASP GLU ILE GLN GLY ASP VAL TYR LYS ASN GLU SEQRES 8 B 339 ILE GLU PRO ASN LEU GLU LYS HIS ASN ALA LEU ALA PHE SEQRES 9 B 339 ALA HIS GLY PHE ASN ILE HIS PHE GLY VAL ILE GLN PRO SEQRES 10 B 339 PRO ALA ASP VAL ASP VAL PHE LEU VAL ALA PRO LYS GLY SEQRES 11 B 339 PRO GLY HIS LEU VAL ARG ARG THR PHE VAL GLU GLY SER SEQRES 12 B 339 ALA VAL PRO SER LEU PHE GLY ILE GLN GLN ASP ALA SER SEQRES 13 B 339 GLY GLN ALA ARG ASN ILE ALA LEU SER TYR ALA LYS GLY SEQRES 14 B 339 ILE GLY ALA THR ARG ALA GLY VAL ILE GLU THR THR PHE SEQRES 15 B 339 LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN ALA SEQRES 16 B 339 VAL LEU CYS GLY GLY VAL SER LYS LEU ILE GLN SER GLY SEQRES 17 B 339 PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU LEU SEQRES 18 B 339 ALA TYR PHE GLU VAL LEU HIS GLU MET LYS LEU ILE VAL SEQRES 19 B 339 ASP LEU MET TYR GLU GLY GLY MET GLU ASN VAL ARG TYR SEQRES 20 B 339 SER ILE SER ASN THR ALA GLU PHE GLY ASP TYR VAL SER SEQRES 21 B 339 GLY PRO ARG VAL ILE THR PRO ASP VAL LYS GLU ASN MET SEQRES 22 B 339 LYS ALA VAL LEU THR ASP ILE GLN ASN GLY ASN PHE SER SEQRES 23 B 339 ASN ARG PHE ILE GLU ASP ASN LYS ASN GLY PHE LYS GLU SEQRES 24 B 339 PHE TYR LYS LEU ARG GLU GLU GLN HIS GLY HIS GLN ILE SEQRES 25 B 339 GLU LYS VAL GLY ARG GLU LEU ARG GLU MET MET PRO PHE SEQRES 26 B 339 ILE LYS SER LYS SER ILE GLU LYS HIS HIS HIS HIS HIS SEQRES 27 B 339 HIS HET NDP A 401 48 HET MG A 402 1 HET MG A 403 1 HET EN4 A 404 12 HET 81B A 405 11 HET EN4 B 401 12 HET 81B B 402 11 HET NDP B 403 48 HET MG B 404 1 HET MG B 405 1 HET IMD B 406 5 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EN4 [CYCLOPENTYL(HYDROXY)AMINO](OXO)ACETIC ACID HETNAM 81B (CYCLOPENTYLAMINO)(OXO)ACETIC ACID HETNAM IMD IMIDAZOLE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 MG 4(MG 2+) FORMUL 6 EN4 2(C7 H11 N O4) FORMUL 7 81B 2(C7 H11 N O3) FORMUL 13 IMD C3 H5 N2 1+ FORMUL 14 HOH *836(H2 O) HELIX 1 AA1 TYR A 6 VAL A 10 5 5 HELIX 2 AA2 GLY A 26 ASN A 39 1 14 HELIX 3 AA3 GLY A 50 ASP A 59 1 10 HELIX 4 AA4 PRO A 65 ALA A 73 1 9 HELIX 5 AA5 PRO A 81 ILE A 93 1 13 HELIX 6 AA6 GLU A 94 LEU A 97 5 4 HELIX 7 AA7 GLY A 108 PHE A 113 1 6 HELIX 8 AA8 PRO A 132 GLU A 142 1 11 HELIX 9 AA9 GLN A 159 ILE A 171 1 13 HELIX 10 AB1 GLY A 172 ALA A 176 5 5 HELIX 11 AB2 THR A 182 VAL A 197 1 16 HELIX 12 AB3 CYS A 199 ALA A 216 1 18 HELIX 13 AB4 GLN A 219 LEU A 228 1 10 HELIX 14 AB5 LEU A 228 GLY A 242 1 15 HELIX 15 AB6 SER A 251 ILE A 266 1 16 HELIX 16 AB7 THR A 267 ASN A 283 1 17 HELIX 17 AB8 GLY A 284 ASN A 296 1 13 HELIX 18 AB9 PHE A 298 HIS A 309 1 12 HELIX 19 AC1 HIS A 311 MET A 323 1 13 HELIX 20 AC2 TYR B 6 VAL B 10 5 5 HELIX 21 AC3 GLY B 26 ASN B 39 1 14 HELIX 22 AC4 GLY B 50 ASP B 59 1 10 HELIX 23 AC5 PRO B 65 ALA B 73 1 9 HELIX 24 AC6 PRO B 81 ILE B 93 1 13 HELIX 25 AC7 GLU B 94 LEU B 97 5 4 HELIX 26 AC8 GLY B 108 PHE B 113 1 6 HELIX 27 AC9 PRO B 132 GLY B 143 1 12 HELIX 28 AD1 GLN B 159 ILE B 171 1 13 HELIX 29 AD2 GLY B 172 ALA B 176 5 5 HELIX 30 AD3 THR B 182 VAL B 197 1 16 HELIX 31 AD4 CYS B 199 ALA B 216 1 18 HELIX 32 AD5 GLN B 219 LEU B 228 1 10 HELIX 33 AD6 LEU B 228 ILE B 250 1 23 HELIX 34 AD7 SER B 251 ILE B 266 1 16 HELIX 35 AD8 THR B 267 ASN B 283 1 17 HELIX 36 AD9 GLY B 284 ASN B 296 1 13 HELIX 37 AE1 PHE B 298 GLN B 308 1 11 HELIX 38 AE2 HIS B 311 MET B 323 1 13 SHEET 1 AA1 9 VAL A 4 TYR A 5 0 SHEET 2 AA1 9 VAL A 178 GLU A 180 -1 O VAL A 178 N TYR A 5 SHEET 3 AA1 9 SER A 148 GLN A 154 1 N PHE A 150 O ILE A 179 SHEET 4 AA1 9 ASP A 123 PRO A 129 -1 N ALA A 128 O LEU A 149 SHEET 5 AA1 9 ALA A 102 PHE A 105 1 N LEU A 103 O ASP A 123 SHEET 6 AA1 9 VAL A 75 VAL A 78 1 N ILE A 76 O ALA A 104 SHEET 7 AA1 9 LYS A 19 VAL A 23 1 N VAL A 23 O MET A 77 SHEET 8 AA1 9 ASP A 42 GLY A 46 1 O ASP A 42 N ILE A 20 SHEET 9 AA1 9 VAL A 63 PHE A 64 1 O PHE A 64 N ILE A 45 SHEET 1 AA2 9 VAL B 4 TYR B 5 0 SHEET 2 AA2 9 VAL B 178 GLU B 180 -1 O VAL B 178 N TYR B 5 SHEET 3 AA2 9 SER B 148 GLN B 154 1 N PHE B 150 O ILE B 179 SHEET 4 AA2 9 ASP B 123 PRO B 129 -1 N ALA B 128 O LEU B 149 SHEET 5 AA2 9 ALA B 102 PHE B 105 1 N LEU B 103 O ASP B 123 SHEET 6 AA2 9 VAL B 75 VAL B 78 1 N ILE B 76 O ALA B 104 SHEET 7 AA2 9 LYS B 19 VAL B 23 1 N ALA B 21 O VAL B 75 SHEET 8 AA2 9 ASP B 42 GLY B 46 1 O ASP B 42 N ILE B 20 SHEET 9 AA2 9 ASP B 62 PHE B 64 1 O PHE B 64 N ILE B 45 LINK OD1 ASP A 190 MG MG A 402 1555 1555 1.99 LINK OD2 ASP A 190 MG MG A 403 1555 1555 1.93 LINK OE2 GLU A 194 MG MG A 402 1555 1555 2.17 LINK MG MG A 402 O01AEN4 A 404 1555 1555 2.15 LINK MG MG A 402 O11AEN4 A 404 1555 1555 2.17 LINK MG MG A 402 O10B81B A 405 1555 1555 2.13 LINK MG MG A 402 O11B81B A 405 1555 1555 2.15 LINK MG MG A 402 O HOH A 557 1555 1555 2.06 LINK MG MG A 402 O HOH A 706 1555 1555 2.09 LINK MG MG A 403 O05AEN4 A 404 1555 1555 2.12 LINK MG MG A 403 O11AEN4 A 404 1555 1555 2.11 LINK MG MG A 403 O10B81B A 405 1555 1555 2.00 LINK MG MG A 403 O HOH A 501 1555 1555 2.33 LINK MG MG A 403 O HOH A 595 1555 1555 2.10 LINK MG MG A 403 O HOH B 549 1555 1555 2.12 LINK MG MG A 403 O HOH B 597 1555 1555 2.22 LINK O HOH A 527 MG MG B 404 1555 1555 2.15 LINK OD1 ASP B 190 MG MG B 404 1555 1555 1.99 LINK OD2 ASP B 190 MG MG B 405 1555 1555 2.01 LINK OE2 GLU B 194 MG MG B 405 1555 1555 2.18 LINK O05AEN4 B 401 MG MG B 404 1555 1555 2.13 LINK O11AEN4 B 401 MG MG B 404 1555 1555 2.13 LINK O11AEN4 B 401 MG MG B 405 1555 1555 2.08 LINK O12AEN4 B 401 MG MG B 405 1555 1555 2.17 LINK O10B81B B 402 MG MG B 404 1555 1555 2.08 LINK O01B81B B 402 MG MG B 405 1555 1555 2.01 LINK O10B81B B 402 MG MG B 405 1555 1555 2.15 LINK MG MG B 404 O HOH B 501 1555 1555 2.26 LINK MG MG B 404 O HOH B 519 1555 1555 2.14 LINK MG MG B 404 O HOH B 575 1555 1555 2.16 LINK MG MG B 405 O HOH B 571 1555 1555 2.06 LINK MG MG B 405 O HOH B 697 1555 1555 2.10 SITE 1 AC1 42 TYR A 25 GLY A 26 SER A 27 GLN A 28 SITE 2 AC1 42 ILE A 47 ARG A 48 SER A 52 LEU A 79 SITE 3 AC1 42 LEU A 80 PRO A 81 ASP A 82 ILE A 84 SITE 4 AC1 42 GLN A 85 VAL A 88 ALA A 106 HIS A 107 SITE 5 AC1 42 PRO A 129 GLY A 131 PRO A 132 GLY A 133 SITE 6 AC1 42 EN4 A 404 81B A 405 HOH A 511 HOH A 529 SITE 7 AC1 42 HOH A 534 HOH A 539 HOH A 573 HOH A 588 SITE 8 AC1 42 HOH A 613 HOH A 629 HOH A 634 HOH A 657 SITE 9 AC1 42 HOH A 659 HOH A 673 HOH A 674 HOH A 697 SITE 10 AC1 42 HOH A 706 HOH A 717 HOH A 746 SER B 249 SITE 11 AC1 42 ILE B 250 SER B 251 SITE 1 AC2 7 ASP A 190 GLU A 194 MG A 403 EN4 A 404 SITE 2 AC2 7 81B A 405 HOH A 557 HOH A 706 SITE 1 AC3 8 ASP A 190 MG A 402 EN4 A 404 81B A 405 SITE 2 AC3 8 HOH A 501 HOH A 595 HOH B 549 HOH B 597 SITE 1 AC4 17 PRO A 132 ASP A 190 GLU A 194 CYS A 199 SITE 2 AC4 17 NDP A 401 MG A 402 MG A 403 81B A 405 SITE 3 AC4 17 HOH A 501 HOH A 557 HOH A 595 HOH A 706 SITE 4 AC4 17 GLU B 230 ILE B 250 SER B 251 ALA B 254 SITE 5 AC4 17 HOH B 597 SITE 1 AC5 17 PRO A 132 ASP A 190 GLU A 194 CYS A 199 SITE 2 AC5 17 NDP A 401 MG A 402 MG A 403 EN4 A 404 SITE 3 AC5 17 HOH A 501 HOH A 557 HOH A 595 HOH A 706 SITE 4 AC5 17 GLU B 230 ILE B 250 SER B 251 ALA B 254 SITE 5 AC5 17 HOH B 597 SITE 1 AC6 16 GLU A 230 ILE A 250 SER A 251 ALA A 254 SITE 2 AC6 16 PRO B 132 ASP B 190 GLU B 194 CYS B 199 SITE 3 AC6 16 81B B 402 NDP B 403 MG B 404 MG B 405 SITE 4 AC6 16 HOH B 501 HOH B 519 HOH B 571 HOH B 697 SITE 1 AC7 18 GLU A 230 ILE A 234 ILE A 250 SER A 251 SITE 2 AC7 18 ALA A 254 PRO B 132 ASP B 190 GLU B 194 SITE 3 AC7 18 CYS B 199 EN4 B 401 NDP B 403 MG B 404 SITE 4 AC7 18 MG B 405 HOH B 501 HOH B 519 HOH B 571 SITE 5 AC7 18 HOH B 575 HOH B 697 SITE 1 AC8 41 SER A 249 ILE A 250 SER A 251 HOH A 567 SITE 2 AC8 41 TYR B 25 GLY B 26 SER B 27 GLN B 28 SITE 3 AC8 41 ILE B 47 ARG B 48 SER B 52 LEU B 79 SITE 4 AC8 41 LEU B 80 PRO B 81 ASP B 82 ILE B 84 SITE 5 AC8 41 GLN B 85 ALA B 106 HIS B 107 PRO B 129 SITE 6 AC8 41 GLY B 131 PRO B 132 GLY B 133 EN4 B 401 SITE 7 AC8 41 81B B 402 HOH B 520 HOH B 582 HOH B 592 SITE 8 AC8 41 HOH B 601 HOH B 603 HOH B 617 HOH B 624 SITE 9 AC8 41 HOH B 666 HOH B 676 HOH B 678 HOH B 697 SITE 10 AC8 41 HOH B 710 HOH B 718 HOH B 728 HOH B 744 SITE 11 AC8 41 HOH B 778 SITE 1 AC9 8 HOH A 527 ASP B 190 EN4 B 401 81B B 402 SITE 2 AC9 8 MG B 405 HOH B 501 HOH B 519 HOH B 575 SITE 1 AD1 7 ASP B 190 GLU B 194 EN4 B 401 81B B 402 SITE 2 AD1 7 MG B 404 HOH B 571 HOH B 697 SITE 1 AD2 7 ASP B 82 GLU B 83 PHE B 109 ASN B 110 SITE 2 AD2 7 PHE B 290 ILE B 291 HOH B 648 CRYST1 64.480 80.394 67.304 90.00 90.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015509 0.000000 0.000035 0.00000 SCALE2 0.000000 0.012439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014858 0.00000