HEADER RNA 17-JAN-18 6C65 TITLE CRYSTAL STRUCTURE OF THE MANGO-II-A22U FLUORESCENT APTAMER BOUND TO TITLE 2 TO1-BIOTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (36-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (35-MER); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: RNA WAS IN VITRO TRANSCRIBED; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 OTHER_DETAILS: RNA WAS IN VITRO TRANSCRIBED KEYWDS FLUORESCENT, RNA, APTAMER, G-QUADRUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.TRACHMAN,A.R.FERRE-D'AMARE REVDAT 2 13-MAR-24 6C65 1 LINK REVDAT 1 08-AUG-18 6C65 0 JRNL AUTH R.J.TRACHMAN 3RD.,A.ABDOLAHZADEH,A.ANDREONI,R.COJOCARU, JRNL AUTH 2 J.R.KNUTSON,M.RYCKELYNCK,P.J.UNRAU,A.R.FERRE-D'AMARE JRNL TITL CRYSTAL STRUCTURES OF THE MANGO-II RNA APTAMER REVEAL JRNL TITL 2 HETEROGENEOUS FLUOROPHORE BINDING AND GUIDE ENGINEERING OF JRNL TITL 3 VARIANTS WITH IMPROVED SELECTIVITY AND BRIGHTNESS. JRNL REF BIOCHEMISTRY V. 57 3544 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29768001 JRNL DOI 10.1021/ACS.BIOCHEM.8B00399 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.343 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.015 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3875 - 5.3539 1.00 1278 143 0.1492 0.1937 REMARK 3 2 5.3539 - 4.2505 1.00 1203 134 0.1801 0.2147 REMARK 3 3 4.2505 - 3.7135 1.00 1181 130 0.1913 0.2581 REMARK 3 4 3.7135 - 3.3741 0.99 1159 130 0.1993 0.2638 REMARK 3 5 3.3741 - 3.1323 1.00 1167 130 0.1835 0.2528 REMARK 3 6 3.1323 - 2.9477 1.00 1176 131 0.2490 0.2914 REMARK 3 7 2.9477 - 2.8001 1.00 1129 125 0.2958 0.3120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.374 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2730 REMARK 3 ANGLE : 1.225 4250 REMARK 3 CHIRALITY : 0.055 528 REMARK 3 PLANARITY : 0.007 115 REMARK 3 DIHEDRAL : 19.735 1283 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.381 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.95600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 10MM NICL2, 2.3M REMARK 280 AMMONIUM FORMATE, 12% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.15650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.15650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.31950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.31950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.15650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.31950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.84000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.15650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.31950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.84000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 104 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G C 36 O5' C5' C4' O4' C3' O3' C2' REMARK 470 G C 36 O2' C1' N9 C8 N7 C5 C6 REMARK 470 G C 36 O6 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 G B 20 O2' G C 26 1.89 REMARK 500 O2' G B 26 OP2 G C 20 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 28 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 A A 28 C5 - N7 - C8 ANGL. DEV. = -3.7 DEGREES REMARK 500 G A 29 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 G A 11 O6 90.5 REMARK 620 3 G A 15 O6 69.7 86.7 REMARK 620 4 G A 16 O6 144.5 67.2 81.4 REMARK 620 5 G A 20 O6 105.1 150.5 75.9 86.5 REMARK 620 6 G A 21 O6 150.6 101.7 136.9 64.2 77.0 REMARK 620 7 G A 26 O6 68.0 140.7 113.5 145.5 68.8 86.4 REMARK 620 8 G A 27 O6 95.6 71.9 154.2 102.5 129.5 63.9 77.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 10 O6 REMARK 620 2 G A 10 O6 0.0 REMARK 620 3 G A 15 O6 70.1 70.1 REMARK 620 4 G A 15 O6 70.1 70.1 0.0 REMARK 620 5 G A 20 O6 109.7 109.7 70.7 70.7 REMARK 620 6 G A 20 O6 109.7 109.7 70.7 70.7 0.0 REMARK 620 7 G A 26 O6 70.7 70.7 104.6 104.6 66.1 66.1 REMARK 620 8 G A 26 O6 70.7 70.7 104.6 104.6 66.1 66.1 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 11 O6 REMARK 620 2 G A 13 O6 90.7 REMARK 620 3 G A 16 O6 66.5 84.1 REMARK 620 4 G A 18 O6 154.9 67.9 97.3 REMARK 620 5 G A 21 O6 109.9 132.8 67.8 78.7 REMARK 620 6 G A 24 O6 136.1 104.1 154.5 65.0 90.0 REMARK 620 7 G A 27 O6 73.6 157.2 103.8 130.6 69.3 78.1 REMARK 620 8 G A 29 O6 79.5 70.3 137.0 103.8 152.8 67.7 90.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 10 O6 REMARK 620 2 G B 11 O6 85.9 REMARK 620 3 G B 15 O6 72.0 86.8 REMARK 620 4 G B 16 O6 141.0 68.2 77.7 REMARK 620 5 G B 20 O6 98.9 148.7 65.8 90.3 REMARK 620 6 G B 21 O6 149.8 107.7 133.9 68.6 83.4 REMARK 620 7 G B 26 O6 66.6 136.8 113.1 150.6 71.5 86.1 REMARK 620 8 G B 27 O6 89.0 71.1 152.0 108.2 139.5 71.2 75.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 104 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 10 O6 REMARK 620 2 G B 15 O6 71.1 REMARK 620 3 G B 20 O6 110.6 63.0 REMARK 620 4 G B 26 O6 68.3 99.1 71.0 REMARK 620 5 G C 10 O6 124.7 73.0 87.8 158.6 REMARK 620 6 G C 15 O6 75.4 97.1 153.6 132.4 68.9 REMARK 620 7 G C 20 O6 92.6 160.2 135.7 84.6 109.8 67.1 REMARK 620 8 G C 26 O6 162.4 125.8 77.5 101.3 69.9 104.6 71.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 11 O6 REMARK 620 2 G B 13 O6 92.6 REMARK 620 3 G B 16 O6 67.6 82.4 REMARK 620 4 G B 18 O6 141.9 57.3 84.4 REMARK 620 5 G B 21 O6 108.3 131.3 67.1 81.8 REMARK 620 6 G B 24 O6 138.2 96.0 154.1 73.4 96.2 REMARK 620 7 G B 27 O6 74.6 155.3 110.7 141.9 73.3 81.1 REMARK 620 8 G B 29 O6 87.6 59.8 134.0 94.7 158.5 62.6 98.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 10 O6 REMARK 620 2 G C 11 O6 85.8 REMARK 620 3 G C 15 O6 68.0 96.7 REMARK 620 4 G C 16 O6 137.2 68.9 80.8 REMARK 620 5 G C 20 O6 107.6 153.4 68.9 86.3 REMARK 620 6 G C 21 O6 148.2 103.4 138.6 73.5 77.5 REMARK 620 7 G C 26 O6 68.2 133.7 107.1 152.4 72.8 84.3 REMARK 620 8 G C 27 O6 93.5 62.3 153.8 103.5 136.6 65.7 81.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 11 O6 REMARK 620 2 G C 13 O6 92.0 REMARK 620 3 G C 16 O6 62.7 84.2 REMARK 620 4 G C 18 O6 149.4 64.5 94.0 REMARK 620 5 G C 21 O6 104.0 139.1 71.0 84.9 REMARK 620 6 G C 24 O6 136.3 103.1 158.1 71.4 90.9 REMARK 620 7 G C 27 O6 60.9 148.2 96.1 146.7 68.8 88.4 REMARK 620 8 G C 29 O6 78.1 62.1 127.1 104.8 157.6 73.7 94.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKJ A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKJ B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKJ C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 103 DBREF 6C65 A 1 36 PDB 6C65 6C65 1 36 DBREF 6C65 B 1 36 PDB 6C65 6C65 1 36 DBREF 6C65 C 2 36 PDB 6C65 6C65 2 36 SEQRES 1 A 36 G C G U A C G A A G G A G SEQRES 2 A 36 A G G A G A G G U A G A G SEQRES 3 A 36 G A G A G U A C G C SEQRES 1 B 36 G C G U A C G A A G G A G SEQRES 2 B 36 A G G A G A G G U A G A G SEQRES 3 B 36 G A G A G U A C G C SEQRES 1 C 35 C G U A C G A A G G A G A SEQRES 2 C 35 G G A G A G G U A G A G G SEQRES 3 C 35 A G A G U A C G G HET EKJ A 101 53 HET K A 102 1 HET K A 103 1 HET K A 104 1 HET EKJ B 101 53 HET K B 102 1 HET K B 103 1 HET K B 104 1 HET EKJ C 101 53 HET K C 102 1 HET K C 103 1 HETNAM EKJ 4-[(3-{2-[(2-METHOXYETHYL)AMINO]-2-OXOETHYL}-1,3- HETNAM 2 EKJ BENZOTHIAZOL-3-IUM-2-YL)METHYL]-1-METHYLQUINOLIN-1-IUM HETNAM K POTASSIUM ION FORMUL 4 EKJ 3(C23 H25 N3 O2 S 2+) FORMUL 5 K 8(K 1+) LINK O6 G A 10 K K A 103 1555 1555 2.93 LINK O6 G A 10 K K A 104 1555 1555 2.65 LINK O6 G A 10 K K A 104 1555 3654 2.65 LINK O6 G A 11 K K A 102 1555 1555 2.75 LINK O6 G A 11 K K A 103 1555 1555 2.75 LINK O6 G A 13 K K A 102 1555 1555 2.65 LINK O6 G A 15 K K A 103 1555 1555 2.77 LINK O6 G A 15 K K A 104 1555 1555 3.00 LINK O6 G A 15 K K A 104 1555 3654 3.00 LINK O6 G A 16 K K A 102 1555 1555 2.70 LINK O6 G A 16 K K A 103 1555 1555 2.64 LINK O6 G A 18 K K A 102 1555 1555 2.87 LINK O6 G A 20 K K A 103 1555 1555 2.71 LINK O6 G A 20 K K A 104 1555 1555 2.82 LINK O6 G A 20 K K A 104 1555 3654 2.82 LINK O6 G A 21 K K A 102 1555 1555 2.70 LINK O6 G A 21 K K A 103 1555 1555 3.00 LINK O6 G A 24 K K A 102 1555 1555 2.71 LINK O6 G A 26 K K A 103 1555 1555 2.74 LINK O6 G A 26 K K A 104 1555 1555 2.83 LINK O6 G A 26 K K A 104 1555 3654 2.83 LINK O6 G A 27 K K A 102 1555 1555 2.73 LINK O6 G A 27 K K A 103 1555 1555 2.83 LINK O6 G A 29 K K A 102 1555 1555 2.69 LINK O6 G B 10 K K B 102 1555 1555 2.89 LINK O6 G B 10 K K B 104 1555 1555 2.57 LINK O6 G B 11 K K B 102 1555 1555 2.67 LINK O6 G B 11 K K B 103 1555 1555 2.62 LINK O6 G B 13 K K B 103 1555 1555 2.73 LINK O6 G B 15 K K B 102 1555 1555 2.58 LINK O6 G B 15 K K B 104 1555 1555 2.95 LINK O6 G B 16 K K B 102 1555 1555 2.72 LINK O6 G B 16 K K B 103 1555 1555 2.80 LINK O6 G B 18 K K B 103 1555 1555 2.91 LINK O6 G B 20 K K B 102 1555 1555 2.93 LINK O6 G B 20 K K B 104 1555 1555 2.80 LINK O6 G B 21 K K B 102 1555 1555 2.75 LINK O6 G B 21 K K B 103 1555 1555 2.77 LINK O6 G B 24 K K B 103 1555 1555 2.70 LINK O6 G B 26 K K B 102 1555 1555 2.85 LINK O6 G B 26 K K B 104 1555 1555 3.01 LINK O6 G B 27 K K B 102 1555 1555 2.81 LINK O6 G B 27 K K B 103 1555 1555 2.64 LINK O6 G B 29 K K B 103 1555 1555 3.01 LINK K K B 104 O6 G C 10 1555 1555 2.78 LINK K K B 104 O6 G C 15 1555 1555 2.76 LINK K K B 104 O6 G C 20 1555 1555 2.82 LINK K K B 104 O6 G C 26 1555 1555 2.73 LINK O6 G C 10 K K C 102 1555 1555 2.91 LINK O6 G C 11 K K C 102 1555 1555 2.70 LINK O6 G C 11 K K C 103 1555 1555 2.84 LINK O6 G C 13 K K C 103 1555 1555 2.85 LINK O6 G C 15 K K C 102 1555 1555 2.69 LINK O6 G C 16 K K C 102 1555 1555 2.65 LINK O6 G C 16 K K C 103 1555 1555 2.98 LINK O6 G C 18 K K C 103 1555 1555 2.82 LINK O6 G C 20 K K C 102 1555 1555 2.76 LINK O6 G C 21 K K C 102 1555 1555 2.89 LINK O6 G C 21 K K C 103 1555 1555 2.73 LINK O6 G C 24 K K C 103 1555 1555 2.65 LINK O6 G C 26 K K C 102 1555 1555 2.71 LINK O6 G C 27 K K C 102 1555 1555 2.59 LINK O6 G C 27 K K C 103 1555 1555 2.54 LINK O6 G C 29 K K C 103 1555 1555 2.86 SITE 1 AC1 9 A A 12 G A 13 A A 17 G A 18 SITE 2 AC1 9 U A 22 A A 23 G A 24 A A 28 SITE 3 AC1 9 G A 29 SITE 1 AC2 9 G A 11 G A 13 G A 16 G A 18 SITE 2 AC2 9 G A 21 G A 24 G A 27 G A 29 SITE 3 AC2 9 K A 103 SITE 1 AC3 10 G A 10 G A 11 G A 15 G A 16 SITE 2 AC3 10 G A 20 G A 21 G A 26 G A 27 SITE 3 AC3 10 K A 102 K A 104 SITE 1 AC4 5 G A 10 G A 15 G A 20 G A 26 SITE 2 AC4 5 K A 103 SITE 1 AC5 8 A B 12 G B 13 A B 17 U B 22 SITE 2 AC5 8 A B 23 G B 24 A B 28 G B 29 SITE 1 AC6 10 G B 10 G B 11 G B 15 G B 16 SITE 2 AC6 10 G B 20 G B 21 G B 26 G B 27 SITE 3 AC6 10 K B 103 K B 104 SITE 1 AC7 9 G B 11 G B 13 G B 16 G B 18 SITE 2 AC7 9 G B 21 G B 24 G B 27 G B 29 SITE 3 AC7 9 K B 102 SITE 1 AC8 10 G B 10 G B 15 G B 20 G B 26 SITE 2 AC8 10 K B 102 G C 10 G C 15 G C 20 SITE 3 AC8 10 G C 26 K C 102 SITE 1 AC9 7 A C 12 G C 13 A C 17 U C 22 SITE 2 AC9 7 G C 24 A C 28 G C 29 SITE 1 AD1 10 K B 104 G C 10 G C 11 G C 15 SITE 2 AD1 10 G C 16 G C 20 G C 21 G C 26 SITE 3 AD1 10 G C 27 K C 103 SITE 1 AD2 9 G C 11 G C 13 G C 16 G C 18 SITE 2 AD2 9 G C 21 G C 24 G C 27 G C 29 SITE 3 AD2 9 K C 102 CRYST1 36.639 179.680 108.313 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027293 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005565 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009233 0.00000