HEADER FLAVOPROTEIN/INHIBITOR 19-JAN-18 6C6N TITLE HUMAN SQUALENE EPOXIDASE (SQLE, SQUALENE MONOOXYGENASE) STRUCTURE WITH TITLE 2 FAD AND CMPD-4" COMPND MOL_ID: 1; COMPND 2 MOLECULE: SQUALENE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 118-574; COMPND 5 SYNONYM: SQUALENE EPOXIDASE,SE; COMPND 6 EC: 1.14.14.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SQLE, ERG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHOLESTEROL SYNTHESIS PATHWAY, SQLE, ERG1, FAD-DEPENDENT KEYWDS 2 MONOOXYGENASE, SQUALENE HYDROXYLASE, SQUALENE-2, 3-EPOXIDASE, KEYWDS 3 FLAVOPROTEIN, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX, KEYWDS 4 FLAVOPROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.K.PADYANA,L.JIN REVDAT 3 13-MAR-24 6C6N 1 JRNL REVDAT 2 23-JAN-19 6C6N 1 JRNL REVDAT 1 16-JAN-19 6C6N 0 JRNL AUTH A.K.PADYANA,S.GROSS,L.JIN,G.CIANCHETTA,R.NARAYANASWAMY, JRNL AUTH 2 F.WANG,R.WANG,C.FANG,X.LV,S.A.BILLER,L.DANG,C.E.MAHONEY, JRNL AUTH 3 N.NAGARAJA,D.PIRMAN,Z.SUI,J.POPOVICI-MULLER,G.A.SMOLEN JRNL TITL STRUCTURE AND INHIBITION MECHANISM OF THE CATALYTIC DOMAIN JRNL TITL 2 OF HUMAN SQUALENE EPOXIDASE. JRNL REF NAT COMMUN V. 10 97 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30626872 JRNL DOI 10.1038/S41467-018-07928-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.E.MAHONEY,D.PIRMAN,V.CHUBUKOV,T.SLEGER,S.HAYES,Z.P.FAN, REMARK 1 AUTH 2 E.L.ALLEN,Y.CHEN,L.HUANG,M.LIU,Y.ZHANG,G.MCDONALD, REMARK 1 AUTH 3 R.NARAYANASWAMY,S.CHOE,Y.CHEN,S.GROSS,G.CIANCHETTA, REMARK 1 AUTH 4 A.K.PADYANA,S.MURRAY,W.LIU,K.M.MARKS,J.MURTIE,M.DORSCH, REMARK 1 AUTH 5 S.JIN,N.NAGARAJA,S.A.BILLER,T.RODDY,J.POPOVICI-MULLER, REMARK 1 AUTH 6 G.A.SMOLEN REMARK 1 TITL A CHEMICAL BIOLOGY SCREEN IDENTIFIES A VULNERABILITY OF REMARK 1 TITL 2 NEUROENDOCRINE CANCER CELLS TO SQLE INHIBITION. REMARK 1 REF NAT COMMUN V. 10 96 2019 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 30626880 REMARK 1 DOI 10.1038/S41467-018-07959-4 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 68379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1700 - 6.6224 0.88 2579 134 0.1617 0.1902 REMARK 3 2 6.6224 - 5.2611 0.99 2794 136 0.1709 0.1840 REMARK 3 3 5.2611 - 4.5975 1.00 2757 168 0.1443 0.1764 REMARK 3 4 4.5975 - 4.1777 1.00 2788 124 0.1528 0.1647 REMARK 3 5 4.1777 - 3.8786 1.00 2732 171 0.1613 0.1733 REMARK 3 6 3.8786 - 3.6502 1.00 2762 141 0.1836 0.2154 REMARK 3 7 3.6502 - 3.4675 0.99 2736 136 0.1888 0.2331 REMARK 3 8 3.4675 - 3.3167 0.99 2646 160 0.2153 0.2518 REMARK 3 9 3.3167 - 3.1890 1.00 2750 156 0.2267 0.2664 REMARK 3 10 3.1890 - 3.0791 0.99 2710 136 0.2353 0.2562 REMARK 3 11 3.0791 - 2.9828 1.00 2749 111 0.2295 0.2533 REMARK 3 12 2.9828 - 2.8976 0.99 2693 135 0.2248 0.2926 REMARK 3 13 2.8976 - 2.8213 0.98 2665 111 0.2250 0.2946 REMARK 3 14 2.8213 - 2.7525 0.99 2729 122 0.2226 0.2613 REMARK 3 15 2.7525 - 2.6900 0.99 2716 121 0.2181 0.2617 REMARK 3 16 2.6900 - 2.6327 0.99 2685 151 0.2136 0.2873 REMARK 3 17 2.6327 - 2.5801 0.99 2686 134 0.2106 0.2259 REMARK 3 18 2.5801 - 2.5314 0.99 2692 137 0.2101 0.2751 REMARK 3 19 2.5314 - 2.4862 0.99 2703 131 0.2199 0.2928 REMARK 3 20 2.4862 - 2.4441 1.00 2669 155 0.2200 0.2548 REMARK 3 21 2.4441 - 2.4047 0.99 2737 127 0.2202 0.2747 REMARK 3 22 2.4047 - 2.3677 0.99 2687 169 0.2102 0.2591 REMARK 3 23 2.3677 - 2.3329 1.00 2693 142 0.2235 0.2587 REMARK 3 24 2.3329 - 2.3000 1.00 2672 141 0.2415 0.2937 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7653 REMARK 3 ANGLE : 0.571 10433 REMARK 3 CHIRALITY : 0.042 1186 REMARK 3 PLANARITY : 0.004 1264 REMARK 3 DIHEDRAL : 15.398 4575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97941 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE FLAT CRYSTAL REMARK 200 SI (III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 109.951 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : 0.55500 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M TRI REMARK 280 -SODIUM CITRATE PH 5.6, 15-18 %(W/V) PEG 4000, 0.02 M HEXAMMINE REMARK 280 COBALT(III) CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.74667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.37333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.37333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.74667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 117 REMARK 465 THR A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 GLN A 121 REMARK 465 MET A 572 REMARK 465 VAL A 573 REMARK 465 HIS A 574 REMARK 465 GLY B 117 REMARK 465 THR B 118 REMARK 465 SER B 119 REMARK 465 SER B 120 REMARK 465 GLN B 121 REMARK 465 MET B 572 REMARK 465 VAL B 573 REMARK 465 HIS B 574 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 131 50.08 -109.85 REMARK 500 PHE A 288 43.50 -100.37 REMARK 500 SER A 304 -158.93 -172.47 REMARK 500 LEU A 385 70.98 61.84 REMARK 500 SER A 461 -107.22 -148.49 REMARK 500 THR A 542 41.09 -142.76 REMARK 500 LYS A 570 58.35 -115.82 REMARK 500 ALA B 131 53.66 -110.19 REMARK 500 ASP B 155 116.52 -160.53 REMARK 500 GLU B 256 -101.04 -89.69 REMARK 500 SER B 304 -162.09 -166.55 REMARK 500 SER B 340 -5.56 -141.02 REMARK 500 ASN B 382 50.20 -118.27 REMARK 500 ASP B 443 86.51 -68.90 REMARK 500 SER B 461 -107.62 -150.30 REMARK 500 ASP B 481 154.43 -48.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 605 REMARK 610 CPS A 606 REMARK 610 CPS A 607 REMARK 610 CPS A 608 REMARK 610 CPS A 609 REMARK 610 CPS B 603 REMARK 610 CPS B 604 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKV A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EKV B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C6P RELATED DB: PDB REMARK 900 WITH NB-598 REMARK 900 RELATED ID: 6C6R RELATED DB: PDB REMARK 900 APO DBREF 6C6N A 118 574 UNP Q14534 ERG1_HUMAN 118 574 DBREF 6C6N B 118 574 UNP Q14534 ERG1_HUMAN 118 574 SEQADV 6C6N GLY A 117 UNP Q14534 EXPRESSION TAG SEQADV 6C6N GLY B 117 UNP Q14534 EXPRESSION TAG SEQRES 1 A 458 GLY THR SER SER GLN ASN ASP PRO GLU VAL ILE ILE VAL SEQRES 2 A 458 GLY ALA GLY VAL LEU GLY SER ALA LEU ALA ALA VAL LEU SEQRES 3 A 458 SER ARG ASP GLY ARG LYS VAL THR VAL ILE GLU ARG ASP SEQRES 4 A 458 LEU LYS GLU PRO ASP ARG ILE VAL GLY GLU PHE LEU GLN SEQRES 5 A 458 PRO GLY GLY TYR HIS VAL LEU LYS ASP LEU GLY LEU GLY SEQRES 6 A 458 ASP THR VAL GLU GLY LEU ASP ALA GLN VAL VAL ASN GLY SEQRES 7 A 458 TYR MET ILE HIS ASP GLN GLU SER LYS SER GLU VAL GLN SEQRES 8 A 458 ILE PRO TYR PRO LEU SER GLU ASN ASN GLN VAL GLN SER SEQRES 9 A 458 GLY ARG ALA PHE HIS HIS GLY ARG PHE ILE MET SER LEU SEQRES 10 A 458 ARG LYS ALA ALA MET ALA GLU PRO ASN ALA LYS PHE ILE SEQRES 11 A 458 GLU GLY VAL VAL LEU GLN LEU LEU GLU GLU ASP ASP VAL SEQRES 12 A 458 VAL MET GLY VAL GLN TYR LYS ASP LYS GLU THR GLY ASP SEQRES 13 A 458 ILE LYS GLU LEU HIS ALA PRO LEU THR VAL VAL ALA ASP SEQRES 14 A 458 GLY LEU PHE SER LYS PHE ARG LYS SER LEU VAL SER ASN SEQRES 15 A 458 LYS VAL SER VAL SER SER HIS PHE VAL GLY PHE LEU MET SEQRES 16 A 458 LYS ASN ALA PRO GLN PHE LYS ALA ASN HIS ALA GLU LEU SEQRES 17 A 458 ILE LEU ALA ASN PRO SER PRO VAL LEU ILE TYR GLN ILE SEQRES 18 A 458 SER SER SER GLU THR ARG VAL LEU VAL ASP ILE ARG GLY SEQRES 19 A 458 GLU MET PRO ARG ASN LEU ARG GLU TYR MET VAL GLU LYS SEQRES 20 A 458 ILE TYR PRO GLN ILE PRO ASP HIS LEU LYS GLU PRO PHE SEQRES 21 A 458 LEU GLU ALA THR ASP ASN SER HIS LEU ARG SER MET PRO SEQRES 22 A 458 ALA SER PHE LEU PRO PRO SER SER VAL LYS LYS ARG GLY SEQRES 23 A 458 VAL LEU LEU LEU GLY ASP ALA TYR ASN MET ARG HIS PRO SEQRES 24 A 458 LEU THR GLY GLY GLY MET THR VAL ALA PHE LYS ASP ILE SEQRES 25 A 458 LYS LEU TRP ARG LYS LEU LEU LYS GLY ILE PRO ASP LEU SEQRES 26 A 458 TYR ASP ASP ALA ALA ILE PHE GLU ALA LYS LYS SER PHE SEQRES 27 A 458 TYR TRP ALA ARG LYS THR SER HIS SER PHE VAL VAL ASN SEQRES 28 A 458 ILE LEU ALA GLN ALA LEU TYR GLU LEU PHE SER ALA THR SEQRES 29 A 458 ASP ASP SER LEU HIS GLN LEU ARG LYS ALA CYS PHE LEU SEQRES 30 A 458 TYR PHE LYS LEU GLY GLY GLU CYS VAL ALA GLY PRO VAL SEQRES 31 A 458 GLY LEU LEU SER VAL LEU SER PRO ASN PRO LEU VAL LEU SEQRES 32 A 458 ILE GLY HIS PHE PHE ALA VAL ALA ILE TYR ALA VAL TYR SEQRES 33 A 458 PHE CYS PHE LYS SER GLU PRO TRP ILE THR LYS PRO ARG SEQRES 34 A 458 ALA LEU LEU SER SER GLY ALA VAL LEU TYR LYS ALA CYS SEQRES 35 A 458 SER VAL ILE PHE PRO LEU ILE TYR SER GLU MET LYS TYR SEQRES 36 A 458 MET VAL HIS SEQRES 1 B 458 GLY THR SER SER GLN ASN ASP PRO GLU VAL ILE ILE VAL SEQRES 2 B 458 GLY ALA GLY VAL LEU GLY SER ALA LEU ALA ALA VAL LEU SEQRES 3 B 458 SER ARG ASP GLY ARG LYS VAL THR VAL ILE GLU ARG ASP SEQRES 4 B 458 LEU LYS GLU PRO ASP ARG ILE VAL GLY GLU PHE LEU GLN SEQRES 5 B 458 PRO GLY GLY TYR HIS VAL LEU LYS ASP LEU GLY LEU GLY SEQRES 6 B 458 ASP THR VAL GLU GLY LEU ASP ALA GLN VAL VAL ASN GLY SEQRES 7 B 458 TYR MET ILE HIS ASP GLN GLU SER LYS SER GLU VAL GLN SEQRES 8 B 458 ILE PRO TYR PRO LEU SER GLU ASN ASN GLN VAL GLN SER SEQRES 9 B 458 GLY ARG ALA PHE HIS HIS GLY ARG PHE ILE MET SER LEU SEQRES 10 B 458 ARG LYS ALA ALA MET ALA GLU PRO ASN ALA LYS PHE ILE SEQRES 11 B 458 GLU GLY VAL VAL LEU GLN LEU LEU GLU GLU ASP ASP VAL SEQRES 12 B 458 VAL MET GLY VAL GLN TYR LYS ASP LYS GLU THR GLY ASP SEQRES 13 B 458 ILE LYS GLU LEU HIS ALA PRO LEU THR VAL VAL ALA ASP SEQRES 14 B 458 GLY LEU PHE SER LYS PHE ARG LYS SER LEU VAL SER ASN SEQRES 15 B 458 LYS VAL SER VAL SER SER HIS PHE VAL GLY PHE LEU MET SEQRES 16 B 458 LYS ASN ALA PRO GLN PHE LYS ALA ASN HIS ALA GLU LEU SEQRES 17 B 458 ILE LEU ALA ASN PRO SER PRO VAL LEU ILE TYR GLN ILE SEQRES 18 B 458 SER SER SER GLU THR ARG VAL LEU VAL ASP ILE ARG GLY SEQRES 19 B 458 GLU MET PRO ARG ASN LEU ARG GLU TYR MET VAL GLU LYS SEQRES 20 B 458 ILE TYR PRO GLN ILE PRO ASP HIS LEU LYS GLU PRO PHE SEQRES 21 B 458 LEU GLU ALA THR ASP ASN SER HIS LEU ARG SER MET PRO SEQRES 22 B 458 ALA SER PHE LEU PRO PRO SER SER VAL LYS LYS ARG GLY SEQRES 23 B 458 VAL LEU LEU LEU GLY ASP ALA TYR ASN MET ARG HIS PRO SEQRES 24 B 458 LEU THR GLY GLY GLY MET THR VAL ALA PHE LYS ASP ILE SEQRES 25 B 458 LYS LEU TRP ARG LYS LEU LEU LYS GLY ILE PRO ASP LEU SEQRES 26 B 458 TYR ASP ASP ALA ALA ILE PHE GLU ALA LYS LYS SER PHE SEQRES 27 B 458 TYR TRP ALA ARG LYS THR SER HIS SER PHE VAL VAL ASN SEQRES 28 B 458 ILE LEU ALA GLN ALA LEU TYR GLU LEU PHE SER ALA THR SEQRES 29 B 458 ASP ASP SER LEU HIS GLN LEU ARG LYS ALA CYS PHE LEU SEQRES 30 B 458 TYR PHE LYS LEU GLY GLY GLU CYS VAL ALA GLY PRO VAL SEQRES 31 B 458 GLY LEU LEU SER VAL LEU SER PRO ASN PRO LEU VAL LEU SEQRES 32 B 458 ILE GLY HIS PHE PHE ALA VAL ALA ILE TYR ALA VAL TYR SEQRES 33 B 458 PHE CYS PHE LYS SER GLU PRO TRP ILE THR LYS PRO ARG SEQRES 34 B 458 ALA LEU LEU SER SER GLY ALA VAL LEU TYR LYS ALA CYS SEQRES 35 B 458 SER VAL ILE PHE PRO LEU ILE TYR SER GLU MET LYS TYR SEQRES 36 B 458 MET VAL HIS HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET SO4 A 604 5 HET CPS A 605 31 HET CPS A 606 30 HET CPS A 607 26 HET CPS A 608 29 HET CPS A 609 25 HET EKV A 610 32 HET FAD A 611 53 HET GOL B 601 6 HET SO4 B 602 5 HET CPS B 603 30 HET CPS B 604 26 HET EKV B 605 32 HET FAD B 606 53 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM EKV N-[(3-{[DIMETHYL(2-METHYLPHENYL)SILYL]METHOXY}PHENYL) HETNAM 2 EKV METHYL]-N-ETHYL-6-METHOXY-6-METHYLHEPTA-2,4-DIYN-1- HETNAM 3 EKV AMINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN CPS CHAPS FORMUL 3 GOL 4(C3 H8 O3) FORMUL 6 SO4 2(O4 S 2-) FORMUL 7 CPS 7(C32 H58 N2 O7 S) FORMUL 12 EKV 2(C28 H37 N O2 SI) FORMUL 13 FAD 2(C27 H33 N9 O15 P2) FORMUL 20 HOH *179(H2 O) HELIX 1 AA1 GLY A 132 ASP A 145 1 14 HELIX 2 AA2 GLN A 168 LEU A 178 1 11 HELIX 3 AA3 LEU A 180 GLU A 185 5 6 HELIX 4 AA4 HIS A 225 ALA A 239 1 15 HELIX 5 AA5 PHE A 291 VAL A 296 1 6 HELIX 6 AA6 ASN A 355 LYS A 363 1 9 HELIX 7 AA7 ILE A 364 ILE A 368 5 5 HELIX 8 AA8 PRO A 369 HIS A 371 5 3 HELIX 9 AA9 LEU A 372 SER A 383 1 12 HELIX 10 AB1 GLY A 407 TYR A 410 5 4 HELIX 11 AB2 HIS A 414 GLY A 418 5 5 HELIX 12 AB3 GLY A 419 GLY A 437 1 19 HELIX 13 AB4 ASP A 443 THR A 460 1 18 HELIX 14 AB5 SER A 461 SER A 478 1 18 HELIX 15 AB6 ASP A 481 LEU A 497 1 17 HELIX 16 AB7 GLY A 499 SER A 510 1 12 HELIX 17 AB8 ASN A 515 GLU A 538 1 24 HELIX 18 AB9 PRO A 539 LYS A 543 5 5 HELIX 19 AC1 PRO A 544 SER A 567 1 24 HELIX 20 AC2 GLY B 132 ASP B 145 1 14 HELIX 21 AC3 GLN B 168 LEU B 178 1 11 HELIX 22 AC4 LEU B 180 GLU B 185 5 6 HELIX 23 AC5 HIS B 225 ALA B 239 1 15 HELIX 24 AC6 PHE B 291 VAL B 296 1 6 HELIX 25 AC7 ASN B 355 LYS B 363 1 9 HELIX 26 AC8 ILE B 364 ILE B 368 5 5 HELIX 27 AC9 PRO B 369 HIS B 371 5 3 HELIX 28 AD1 LEU B 372 ASN B 382 1 11 HELIX 29 AD2 GLY B 407 TYR B 410 5 4 HELIX 30 AD3 HIS B 414 GLY B 418 5 5 HELIX 31 AD4 GLY B 419 GLY B 437 1 19 HELIX 32 AD5 ASP B 443 THR B 460 1 18 HELIX 33 AD6 SER B 461 SER B 478 1 18 HELIX 34 AD7 ASP B 481 LEU B 497 1 17 HELIX 35 AD8 GLY B 499 SER B 510 1 12 HELIX 36 AD9 ASN B 515 GLU B 538 1 24 HELIX 37 AE1 PRO B 539 THR B 542 5 4 HELIX 38 AE2 LYS B 543 SER B 567 1 25 SHEET 1 AA1 7 ILE A 273 HIS A 277 0 SHEET 2 AA1 7 VAL A 260 ASP A 267 -1 N TYR A 265 O LYS A 274 SHEET 3 AA1 7 ALA A 243 GLU A 255 -1 N LEU A 254 O MET A 261 SHEET 4 AA1 7 VAL A 149 GLU A 153 1 N VAL A 151 O ILE A 246 SHEET 5 AA1 7 VAL A 126 VAL A 129 1 N ILE A 128 O THR A 150 SHEET 6 AA1 7 LEU A 280 VAL A 283 1 O VAL A 282 N ILE A 127 SHEET 7 AA1 7 VAL A 403 LEU A 405 1 O LEU A 404 N VAL A 283 SHEET 1 AA2 3 PHE A 166 LEU A 167 0 SHEET 2 AA2 3 GLY A 221 ALA A 223 -1 O ARG A 222 N LEU A 167 SHEET 3 AA2 3 GLN A 190 VAL A 192 -1 N GLN A 190 O ALA A 223 SHEET 1 AA3 7 SER A 204 PRO A 209 0 SHEET 2 AA3 7 GLY A 194 ASP A 199 -1 N TYR A 195 O ILE A 208 SHEET 3 AA3 7 HIS A 321 LEU A 326 1 O LEU A 324 N MET A 196 SHEET 4 AA3 7 VAL A 332 GLN A 336 -1 O VAL A 332 N ILE A 325 SHEET 5 AA3 7 GLU A 341 ILE A 348 -1 O ARG A 343 N TYR A 335 SHEET 6 AA3 7 SER A 301 LYS A 312 -1 N HIS A 305 O ILE A 348 SHEET 7 AA3 7 ARG A 386 PHE A 392 -1 O ALA A 390 N SER A 303 SHEET 1 AA4 7 ILE B 273 HIS B 277 0 SHEET 2 AA4 7 VAL B 260 ASP B 267 -1 N TYR B 265 O LYS B 274 SHEET 3 AA4 7 ALA B 243 GLU B 255 -1 N LEU B 254 O MET B 261 SHEET 4 AA4 7 VAL B 149 GLU B 153 1 N VAL B 151 O ILE B 246 SHEET 5 AA4 7 VAL B 126 VAL B 129 1 N ILE B 128 O THR B 150 SHEET 6 AA4 7 LEU B 280 VAL B 283 1 O VAL B 282 N ILE B 127 SHEET 7 AA4 7 VAL B 403 LEU B 405 1 O LEU B 404 N THR B 281 SHEET 1 AA5 3 PHE B 166 LEU B 167 0 SHEET 2 AA5 3 GLY B 221 ALA B 223 -1 O ARG B 222 N LEU B 167 SHEET 3 AA5 3 GLN B 190 VAL B 192 -1 N GLN B 190 O ALA B 223 SHEET 1 AA6 7 SER B 204 PRO B 209 0 SHEET 2 AA6 7 GLY B 194 ASP B 199 -1 N TYR B 195 O ILE B 208 SHEET 3 AA6 7 HIS B 321 LEU B 326 1 O LEU B 324 N MET B 196 SHEET 4 AA6 7 VAL B 332 GLN B 336 -1 O VAL B 332 N ILE B 325 SHEET 5 AA6 7 GLU B 341 ILE B 348 -1 O ARG B 343 N TYR B 335 SHEET 6 AA6 7 SER B 301 LYS B 312 -1 N VAL B 307 O VAL B 346 SHEET 7 AA6 7 ARG B 386 PHE B 392 -1 O ALA B 390 N SER B 304 CISPEP 1 ASN A 328 PRO A 329 0 4.19 CISPEP 2 ASN B 328 PRO B 329 0 -1.18 SITE 1 AC1 3 HIS A 173 GLN A 219 HOH A 705 SITE 1 AC2 4 GLU A 185 GLY A 186 LEU A 187 ASP A 188 SITE 1 AC3 4 HIS A 173 ASP A 177 LYS A 426 LYS A 429 SITE 1 AC4 3 LEU A 310 ARG A 343 ARG A 386 SITE 1 AC5 7 ASN A 515 ALA A 525 HOH A 728 LEU B 497 SITE 2 AC5 7 TYR B 529 TYR B 532 HOH B 724 SITE 1 AC6 8 TYR A 529 TYR A 532 HOH A 724 HOH A 728 SITE 2 AC6 8 HOH A 774 ASN B 515 ALA B 525 HOH B 724 SITE 1 AC7 3 PHE A 562 TYR A 566 CPS A 608 SITE 1 AC8 6 TYR A 555 SER A 559 PHE A 562 PRO A 563 SITE 2 AC8 6 CPS A 607 GLY B 551 SITE 1 AC9 5 LEU A 434 GLY A 437 GLU A 449 SER A 453 SITE 2 AC9 5 TRP B 456 SITE 1 AD1 18 PHE A 166 TYR A 195 TYR A 210 LEU A 333 SITE 2 AD1 18 TYR A 335 PRO A 415 LEU A 416 GLY A 418 SITE 3 AD1 18 LEU A 469 LEU A 473 PHE A 477 PHE A 495 SITE 4 AD1 18 PRO A 505 LEU A 509 HIS A 522 PHE A 523 SITE 5 AD1 18 VAL A 526 FAD A 611 SITE 1 AD2 31 GLY A 130 GLY A 132 VAL A 133 LEU A 134 SITE 2 AD2 31 ILE A 152 GLU A 153 ARG A 154 ARG A 161 SITE 3 AD2 31 VAL A 163 GLY A 164 GLU A 165 PHE A 166 SITE 4 AD2 31 ARG A 234 VAL A 249 VAL A 250 ALA A 284 SITE 5 AD2 31 ASP A 285 GLY A 286 PRO A 389 GLY A 407 SITE 6 AD2 31 ASP A 408 PRO A 415 GLY A 418 GLY A 420 SITE 7 AD2 31 MET A 421 EKV A 610 HOH A 714 HOH A 719 SITE 8 AD2 31 HOH A 734 HOH A 742 HOH A 748 SITE 1 AD3 3 SER B 213 ASN B 215 GLN B 219 SITE 1 AD4 3 LEU B 310 ARG B 343 ARG B 386 SITE 1 AD5 5 GLY A 551 TYR B 555 SER B 559 HOH B 734 SITE 2 AD5 5 HOH B 750 SITE 1 AD6 4 PRO A 544 LEU A 547 PHE B 562 TYR B 566 SITE 1 AD7 20 PHE B 166 TYR B 195 TYR B 210 ALA B 322 SITE 2 AD7 20 LEU B 333 TYR B 335 PRO B 415 LEU B 416 SITE 3 AD7 20 GLY B 418 LEU B 473 PHE B 477 PHE B 495 SITE 4 AD7 20 PRO B 505 VAL B 506 LEU B 509 LEU B 519 SITE 5 AD7 20 HIS B 522 PHE B 523 VAL B 526 FAD B 606 SITE 1 AD8 28 GLY B 130 GLY B 132 VAL B 133 LEU B 134 SITE 2 AD8 28 ILE B 152 GLU B 153 ARG B 154 ARG B 161 SITE 3 AD8 28 VAL B 163 GLY B 164 GLU B 165 PHE B 166 SITE 4 AD8 28 ARG B 234 VAL B 250 ASP B 285 GLY B 286 SITE 5 AD8 28 PRO B 389 GLY B 407 ASP B 408 PRO B 415 SITE 6 AD8 28 GLY B 418 GLY B 420 MET B 421 EKV B 605 SITE 7 AD8 28 HOH B 708 HOH B 713 HOH B 725 HOH B 731 CRYST1 126.960 126.960 166.120 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007876 0.004547 0.000000 0.00000 SCALE2 0.000000 0.009095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006020 0.00000