HEADER OXIDOREDUCTASE 19-JAN-18 6C75 TITLE STRUCTURE OF IRON CONTAINING ALCOHOL DEHYDROGENASE FROM THERMOCOCCUS TITLE 2 THIOREDUCENS IN A MONOCLINIC CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS THIOREDUCENS; SOURCE 3 ORGANISM_TAXID: 277988; SOURCE 4 ATCC: BAA-394; SOURCE 5 GENE: AMR53_06445, SAMN05216170_0411; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALCOHOL DEHYDROGENASE, IRON-CONTAINING, OXIDOREDUCTASE, OGL-20P EXPDTA X-RAY DIFFRACTION AUTHOR S.B.LARSON,A.MCPHERSON REVDAT 3 04-OCT-23 6C75 1 REMARK REVDAT 2 17-APR-19 6C75 1 JRNL REVDAT 1 23-JAN-19 6C75 0 JRNL AUTH S.B.LARSON,J.A.JONES,A.MCPHERSON JRNL TITL THE STRUCTURE OF AN IRON-CONTAINING ALCOHOL DEHYDROGENASE JRNL TITL 2 FROM A HYPERTHERMOPHILIC ARCHAEON IN TWO CHEMICAL STATES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 75 217 2019 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30950821 JRNL DOI 10.1107/S2053230X19001201 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.9 REMARK 3 NUMBER OF REFLECTIONS : 22218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 19.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.60000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : -2.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6065 ; 0.003 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6009 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8224 ; 0.615 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13750 ; 0.496 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 7.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;36.970 ;23.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1048 ;18.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;20.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 918 ; 0.040 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6668 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1277 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2908 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 11330 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5910 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 5660 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 8 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3022 ; 3.603 ; 4.973 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3021 ; 3.603 ; 4.971 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3774 ; 5.413 ; 7.451 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3775 ; 5.412 ; 7.453 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3043 ; 4.706 ; 5.856 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3035 ; 4.701 ; 5.852 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4450 ; 7.514 ; 8.495 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4438 ; 7.508 ; 8.488 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6828 ; 9.804 ;41.058 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6802 ; 9.807 ;41.016 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3178 68.8589 6.3504 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1416 REMARK 3 T33: 0.0354 T12: 0.0079 REMARK 3 T13: -0.0278 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3247 L22: 0.6874 REMARK 3 L33: 1.0665 L12: 0.0461 REMARK 3 L13: 0.0038 L23: -0.1897 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: 0.0128 S13: 0.0289 REMARK 3 S21: -0.0050 S22: 0.1243 S23: 0.0368 REMARK 3 S31: 0.0691 S32: 0.2177 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2278 54.5693 8.9515 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1288 REMARK 3 T33: 0.1018 T12: -0.0146 REMARK 3 T13: -0.0227 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.4791 L22: 0.3512 REMARK 3 L33: 0.6254 L12: -0.1639 REMARK 3 L13: -0.3862 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.1332 S12: 0.0896 S13: -0.1229 REMARK 3 S21: 0.0576 S22: 0.0423 S23: 0.1433 REMARK 3 S31: 0.0326 S32: 0.0293 S33: 0.0909 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3246 85.5518 35.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.1251 T22: 0.1622 REMARK 3 T33: 0.0520 T12: -0.0146 REMARK 3 T13: -0.0124 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.3203 L22: 0.7151 REMARK 3 L33: 0.9265 L12: -0.2113 REMARK 3 L13: -0.4684 L23: 0.1444 REMARK 3 S TENSOR REMARK 3 S11: 0.0856 S12: -0.1598 S13: 0.0504 REMARK 3 S21: -0.0431 S22: 0.0754 S23: 0.0884 REMARK 3 S31: -0.0523 S32: 0.2674 S33: -0.1609 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 378 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1123 88.5995 22.8150 REMARK 3 T TENSOR REMARK 3 T11: 0.1069 T22: 0.0691 REMARK 3 T33: 0.1460 T12: 0.0009 REMARK 3 T13: -0.0758 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.7174 L22: 0.9511 REMARK 3 L33: 0.7614 L12: -0.0357 REMARK 3 L13: -0.3890 L23: -0.1017 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.0487 S13: 0.0825 REMARK 3 S21: -0.0201 S22: -0.0498 S23: 0.2088 REMARK 3 S31: -0.0604 S32: 0.0451 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9883 62.0596 0.0923 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.1766 REMARK 3 T33: 0.0067 T12: -0.0276 REMARK 3 T13: -0.0203 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.4446 L22: 7.9696 REMARK 3 L33: 5.7485 L12: -0.3803 REMARK 3 L13: 1.4958 L23: 1.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0934 S13: -0.0052 REMARK 3 S21: 0.2037 S22: 0.0099 S23: -0.0095 REMARK 3 S31: 0.1833 S32: -0.4019 S33: -0.0237 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1800 B 1800 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6625 84.9889 41.4546 REMARK 3 T TENSOR REMARK 3 T11: 0.3524 T22: 0.2854 REMARK 3 T33: 0.0644 T12: -0.0092 REMARK 3 T13: 0.0168 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 11.7428 L22: 0.9767 REMARK 3 L33: 0.0078 L12: -3.3848 REMARK 3 L13: -0.2423 L23: 0.0716 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.2429 S13: 0.2446 REMARK 3 S21: 0.0010 S22: 0.0567 S23: -0.0735 REMARK 3 S31: -0.0148 S32: -0.0166 S33: -0.0114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE GENERATED BY REFMAC5 AND REMARK 3 KEPT IN POSITION BY RIDING ON THE ATOMS TO WHICH THEY WERE REMARK 3 ATTACHED UNLESS MOVED TO RELIEVE VAN DER WAALS CONTACTS REMARK 4 REMARK 4 6C75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.23400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 1O2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 8% PEG 4000, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.62400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 34 O HOH A 509 1.56 REMARK 500 HZ1 LYS A 102 O THR A 132 1.60 REMARK 500 H LEU A 329 O HOH A 516 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -35.95 -36.91 REMARK 500 ILE A 118 -64.28 -94.07 REMARK 500 LYS A 131 -30.69 -131.20 REMARK 500 ARG A 255 -171.31 71.21 REMARK 500 LYS B 23 133.49 -38.56 REMARK 500 GLU B 65 87.68 57.71 REMARK 500 LYS B 131 -33.42 -134.98 REMARK 500 ARG B 255 -170.12 68.01 REMARK 500 LEU B 256 -165.56 -129.98 REMARK 500 PHE B 307 -152.77 -113.04 REMARK 500 GLN B 308 -54.06 -137.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 161 ILE A 162 142.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 17 10.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD1 REMARK 620 2 HIS A 197 NE2 98.5 REMARK 620 3 HIS A 260 NE2 105.7 84.5 REMARK 620 4 HIS A 272 NE2 91.4 165.8 83.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATR B 1800 DBREF1 6C75 A 1 378 UNP A0A0Q2QQL1_9EURY DBREF2 6C75 A A0A0Q2QQL1 1 378 DBREF1 6C75 B 1 378 UNP A0A0Q2QQL1_9EURY DBREF2 6C75 B A0A0Q2QQL1 1 378 SEQRES 1 A 378 MET PHE TRP LEU LYS THR ARG ILE ILE GLU GLY GLU GLY SEQRES 2 A 378 SER LEU SER ARG LEU SER ARG GLU VAL LYS GLY HIS GLU SEQRES 3 A 378 ARG VAL LEU ILE LEU ALA SER GLY SER MET LYS ARG HIS SEQRES 4 A 378 GLY PHE LEU SER GLU ALA GLU ASP TYR VAL LYS GLU ALA SEQRES 5 A 378 GLY ALA GLU VAL PHE SER ILE ALA GLY LEU PRO ALA GLU SEQRES 6 A 378 PRO SER VAL GLU VAL ILE GLU GLU PHE LEU PRO LYS VAL SEQRES 7 A 378 ARG GLU PHE GLY PRO ASP LEU LEU VAL ALA MET GLY GLY SEQRES 8 A 378 GLY SER VAL ILE ASP THR THR LYS ALA LEU LYS VAL PHE SEQRES 9 A 378 TYR ASP ALA PRO GLU LEU ASN PHE GLY GLU ILE ALA PHE SEQRES 10 A 378 ILE ASP ARG PHE SER LYS PRO LYS PRO VAL PRO ARG LEU SEQRES 11 A 378 LYS THR LEU LEU ILE ALA ILE PRO SER THR SER GLY ALA SEQRES 12 A 378 GLY SER GLU VAL SER GLY ALA SER VAL LEU LYS LYS GLY SEQRES 13 A 378 GLY VAL LYS TYR ASN ILE VAL THR PRO GLU ILE ALA PRO SEQRES 14 A 378 ASP VAL ALA ILE LEU ASP PRO ARG LEU PRO ARG THR MET SEQRES 15 A 378 PRO PRO GLU VAL ALA ARG ASN SER GLY LEU ASP VAL LEU SEQRES 16 A 378 VAL HIS GLY ILE GLU ALA TYR THR THR LYS VAL ALA SER SEQRES 17 A 378 PRO PHE SER ASP ALA MET ALA ILE LYS ALA ILE LYS THR SEQRES 18 A 378 VAL TYR ARG TRP LEU PRO LEU SER VAL LYS GLY ASP GLU SEQRES 19 A 378 GLU ALA ARG ALA ARG VAL HIS TYR ALA ALA THR MET ALA SEQRES 20 A 378 GLY ILE ALA PHE LEU ASN ALA ARG LEU GLY LEU CYS HIS SEQRES 21 A 378 ALA MET SER HIS LYS ALA ALA TRP ILE GLY PRO HIS GLY SEQRES 22 A 378 LEU LEU ASN ALA VAL PHE LEU PRO TYR VAL MET GLU PHE SEQRES 23 A 378 ASN ALA SER LYS SER ASP TYR ALA ARG ARG ARG TYR ALA SEQRES 24 A 378 GLU ILE ALA ARG GLU LEU GLY PHE GLN THR ALA LYS ASP SEQRES 25 A 378 LEU ILE GLU VAL VAL LYS GLU LEU ASN GLU MET LEU GLY SEQRES 26 A 378 VAL PRO LYS LEU GLY GLU LEU VAL ASP GLU GLU THR PHE SEQRES 27 A 378 ALA SER LYS VAL GLU GLU MET ALA GLU LYS THR TYR HIS SEQRES 28 A 378 ASP GLY LEU ILE ALA PHE ASN PRO VAL GLU PRO LYS PRO SEQRES 29 A 378 GLU GLU ILE LYS GLU LEU TYR LEU LYS ALA TYR ARG GLY SEQRES 30 A 378 GLU SEQRES 1 B 378 MET PHE TRP LEU LYS THR ARG ILE ILE GLU GLY GLU GLY SEQRES 2 B 378 SER LEU SER ARG LEU SER ARG GLU VAL LYS GLY HIS GLU SEQRES 3 B 378 ARG VAL LEU ILE LEU ALA SER GLY SER MET LYS ARG HIS SEQRES 4 B 378 GLY PHE LEU SER GLU ALA GLU ASP TYR VAL LYS GLU ALA SEQRES 5 B 378 GLY ALA GLU VAL PHE SER ILE ALA GLY LEU PRO ALA GLU SEQRES 6 B 378 PRO SER VAL GLU VAL ILE GLU GLU PHE LEU PRO LYS VAL SEQRES 7 B 378 ARG GLU PHE GLY PRO ASP LEU LEU VAL ALA MET GLY GLY SEQRES 8 B 378 GLY SER VAL ILE ASP THR THR LYS ALA LEU LYS VAL PHE SEQRES 9 B 378 TYR ASP ALA PRO GLU LEU ASN PHE GLY GLU ILE ALA PHE SEQRES 10 B 378 ILE ASP ARG PHE SER LYS PRO LYS PRO VAL PRO ARG LEU SEQRES 11 B 378 LYS THR LEU LEU ILE ALA ILE PRO SER THR SER GLY ALA SEQRES 12 B 378 GLY SER GLU VAL SER GLY ALA SER VAL LEU LYS LYS GLY SEQRES 13 B 378 GLY VAL LYS TYR ASN ILE VAL THR PRO GLU ILE ALA PRO SEQRES 14 B 378 ASP VAL ALA ILE LEU ASP PRO ARG LEU PRO ARG THR MET SEQRES 15 B 378 PRO PRO GLU VAL ALA ARG ASN SER GLY LEU ASP VAL LEU SEQRES 16 B 378 VAL HIS GLY ILE GLU ALA TYR THR THR LYS VAL ALA SER SEQRES 17 B 378 PRO PHE SER ASP ALA MET ALA ILE LYS ALA ILE LYS THR SEQRES 18 B 378 VAL TYR ARG TRP LEU PRO LEU SER VAL LYS GLY ASP GLU SEQRES 19 B 378 GLU ALA ARG ALA ARG VAL HIS TYR ALA ALA THR MET ALA SEQRES 20 B 378 GLY ILE ALA PHE LEU ASN ALA ARG LEU GLY LEU CYS HIS SEQRES 21 B 378 ALA MET SER HIS LYS ALA ALA TRP ILE GLY PRO HIS GLY SEQRES 22 B 378 LEU LEU ASN ALA VAL PHE LEU PRO TYR VAL MET GLU PHE SEQRES 23 B 378 ASN ALA SER LYS SER ASP TYR ALA ARG ARG ARG TYR ALA SEQRES 24 B 378 GLU ILE ALA ARG GLU LEU GLY PHE GLN THR ALA LYS ASP SEQRES 25 B 378 LEU ILE GLU VAL VAL LYS GLU LEU ASN GLU MET LEU GLY SEQRES 26 B 378 VAL PRO LYS LEU GLY GLU LEU VAL ASP GLU GLU THR PHE SEQRES 27 B 378 ALA SER LYS VAL GLU GLU MET ALA GLU LYS THR TYR HIS SEQRES 28 B 378 ASP GLY LEU ILE ALA PHE ASN PRO VAL GLU PRO LYS PRO SEQRES 29 B 378 GLU GLU ILE LYS GLU LEU TYR LEU LYS ALA TYR ARG GLY SEQRES 30 B 378 GLU HET FE A 401 1 HET NAP A 402 73 HET ATR B1800 42 HETNAM FE FE (III) ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ATR 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 FE FE 3+ FORMUL 4 NAP C21 H28 N7 O17 P3 FORMUL 5 ATR C10 H16 N5 O13 P3 FORMUL 6 HOH *167(H2 O) HELIX 1 AA1 GLY A 13 SER A 16 5 4 HELIX 2 AA2 ARG A 17 LYS A 23 1 7 HELIX 3 AA3 SER A 33 HIS A 39 1 7 HELIX 4 AA4 GLY A 40 ALA A 52 1 13 HELIX 5 AA5 VAL A 68 GLY A 82 1 15 HELIX 6 AA6 GLY A 91 ALA A 107 1 17 HELIX 7 AA7 ASN A 111 ALA A 116 1 6 HELIX 8 AA8 PRO A 165 ALA A 168 5 4 HELIX 9 AA9 LEU A 178 MET A 182 5 5 HELIX 10 AB1 PRO A 183 THR A 204 1 22 HELIX 11 AB2 SER A 208 GLY A 232 1 25 HELIX 12 AB3 ASP A 233 ARG A 255 1 23 HELIX 13 AB4 GLY A 257 ALA A 266 1 10 HELIX 14 AB5 ALA A 267 GLY A 270 5 4 HELIX 15 AB6 PRO A 271 SER A 291 1 21 HELIX 16 AB7 SER A 291 LEU A 305 1 15 HELIX 17 AB8 THR A 309 LEU A 324 1 16 HELIX 18 AB9 LYS A 328 LEU A 332 5 5 HELIX 19 AC1 ASP A 334 SER A 340 1 7 HELIX 20 AC2 LYS A 341 HIS A 351 1 11 HELIX 21 AC3 ASP A 352 PHE A 357 5 6 HELIX 22 AC4 LYS A 363 GLY A 377 1 15 HELIX 23 AC5 GLY B 13 SER B 16 5 4 HELIX 24 AC6 ARG B 17 LYS B 23 1 7 HELIX 25 AC7 SER B 33 HIS B 39 1 7 HELIX 26 AC8 GLY B 40 ALA B 52 1 13 HELIX 27 AC9 SER B 67 GLY B 82 1 16 HELIX 28 AD1 GLY B 91 ALA B 107 1 17 HELIX 29 AD2 PRO B 165 ALA B 168 5 4 HELIX 30 AD3 LEU B 178 MET B 182 5 5 HELIX 31 AD4 PRO B 183 THR B 203 1 21 HELIX 32 AD5 SER B 208 LYS B 231 1 24 HELIX 33 AD6 ASP B 233 ARG B 255 1 23 HELIX 34 AD7 GLY B 257 ALA B 266 1 10 HELIX 35 AD8 PRO B 271 SER B 291 1 21 HELIX 36 AD9 SER B 291 LEU B 305 1 15 HELIX 37 AE1 THR B 309 LEU B 324 1 16 HELIX 38 AE2 LYS B 328 LEU B 332 5 5 HELIX 39 AE3 ASP B 334 HIS B 351 1 18 HELIX 40 AE4 ASP B 352 PHE B 357 5 6 HELIX 41 AE5 LYS B 363 GLY B 377 1 15 SHEET 1 AA1 6 ARG A 7 GLU A 10 0 SHEET 2 AA1 6 VAL A 171 LEU A 174 1 O LEU A 174 N ILE A 9 SHEET 3 AA1 6 LEU A 133 PRO A 138 1 N ALA A 136 O VAL A 171 SHEET 4 AA1 6 LEU A 85 GLY A 90 1 N ALA A 88 O ILE A 135 SHEET 5 AA1 6 ARG A 27 ALA A 32 1 N LEU A 31 O VAL A 87 SHEET 6 AA1 6 GLU A 55 ALA A 60 1 O GLU A 55 N VAL A 28 SHEET 1 AA2 2 ALA A 150 LYS A 154 0 SHEET 2 AA2 2 LYS A 159 VAL A 163 -1 O ILE A 162 N SER A 151 SHEET 1 AA3 6 ARG B 7 GLU B 10 0 SHEET 2 AA3 6 VAL B 171 LEU B 174 1 O LEU B 174 N ILE B 9 SHEET 3 AA3 6 LEU B 133 PRO B 138 1 N ALA B 136 O VAL B 171 SHEET 4 AA3 6 LEU B 85 GLY B 90 1 N ALA B 88 O ILE B 137 SHEET 5 AA3 6 ARG B 27 ALA B 32 1 N LEU B 31 O VAL B 87 SHEET 6 AA3 6 GLU B 55 ALA B 60 1 O GLU B 55 N VAL B 28 SHEET 1 AA4 2 ALA B 150 LYS B 155 0 SHEET 2 AA4 2 VAL B 158 VAL B 163 -1 O TYR B 160 N LEU B 153 LINK OD1 ASP A 193 FE FE A 401 1555 1555 2.38 LINK NE2 HIS A 197 FE FE A 401 1555 1555 2.14 LINK NE2 HIS A 260 FE FE A 401 1555 1555 2.23 LINK NE2 HIS A 272 FE FE A 401 1555 1555 2.54 CISPEP 1 SER A 141 GLY A 142 0 15.49 CISPEP 2 SER B 141 GLY B 142 0 6.81 SITE 1 AC1 5 ASP A 193 HIS A 197 HIS A 260 HIS A 272 SITE 2 AC1 5 NAP A 402 SITE 1 AC2 34 SER A 33 GLY A 34 SER A 35 MET A 36 SITE 2 AC2 34 ARG A 38 GLU A 65 GLY A 91 GLY A 92 SITE 3 AC2 34 SER A 93 ASP A 96 SER A 139 THR A 140 SITE 4 AC2 34 ALA A 143 SER A 145 SER A 148 ALA A 150 SITE 5 AC2 34 VAL A 152 LYS A 159 LEU A 178 THR A 181 SITE 6 AC2 34 MET A 182 PRO A 183 VAL A 186 SER A 190 SITE 7 AC2 34 PHE A 251 HIS A 272 FE A 401 HOH A 503 SITE 8 AC2 34 HOH A 509 HOH A 525 HOH A 543 HOH A 563 SITE 9 AC2 34 HOH A 578 HOH A 580 SITE 1 AC3 16 SER B 33 GLY B 34 SER B 35 MET B 36 SITE 2 AC3 16 ARG B 38 GLY B 91 GLY B 92 SER B 93 SITE 3 AC3 16 SER B 139 THR B 140 LEU B 178 THR B 181 SITE 4 AC3 16 MET B 182 PRO B 183 HOH B1905 HOH B1951 CRYST1 59.125 99.248 67.487 90.00 103.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016913 0.000000 0.003955 0.00000 SCALE2 0.000000 0.010076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015217 0.00000