HEADER SIGNALING PROTEIN, TRANSFERASE/INHIBITOR23-JAN-18 6C7Y TITLE CRYSTAL STRUCTURE OF INHIBITORY PROTEIN SOCS1 IN COMPLEX WITH JAK1 TITLE 2 KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE JAK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 869-1153); COMPND 5 SYNONYM: JANUS KINASE 1, JAK-1; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SUPPRESSOR OF CYTOKINE SIGNALING 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 48-164; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JAK1, JAK1A, JAK1B; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 11 ORGANISM_COMMON: CHICKEN; SOURCE 12 ORGANISM_TAXID: 9031; SOURCE 13 GENE: SOCS1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, KINASE INHIBITOR, SIGNALING PROTEIN, TRANSFERASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.P.D.LIAU,A.LAKTYUSHIN,I.S.LUCET,J.M.MURPHY,S.YAO,K.CALLAGHAN, AUTHOR 2 N.A.NICOLA,N.J.KERSHAW,J.J.BABON REVDAT 5 15-NOV-23 6C7Y 1 REMARK REVDAT 4 04-OCT-23 6C7Y 1 LINK REVDAT 3 08-JAN-20 6C7Y 1 REMARK REVDAT 2 20-FEB-19 6C7Y 1 REMARK REVDAT 1 02-MAY-18 6C7Y 0 JRNL AUTH N.P.D.LIAU,A.LAKTYUSHIN,I.S.LUCET,J.M.MURPHY,S.YAO, JRNL AUTH 2 E.WHITLOCK,K.CALLAGHAN,N.A.NICOLA,N.J.KERSHAW,J.J.BABON JRNL TITL THE MOLECULAR BASIS OF JAK/STAT INHIBITION BY SOCS1. JRNL REF NAT COMMUN V. 9 1558 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29674694 JRNL DOI 10.1038/S41467-018-04013-1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6187 - 6.0174 1.00 1468 158 0.1831 0.2191 REMARK 3 2 6.0174 - 4.7786 1.00 1386 147 0.1880 0.2066 REMARK 3 3 4.7786 - 4.1752 1.00 1363 144 0.1607 0.1957 REMARK 3 4 4.1752 - 3.7938 1.00 1344 143 0.1781 0.2078 REMARK 3 5 3.7938 - 3.5221 1.00 1327 142 0.2055 0.2538 REMARK 3 6 3.5221 - 3.3145 1.00 1337 143 0.2108 0.2498 REMARK 3 7 3.3145 - 3.1486 1.00 1318 141 0.2454 0.2599 REMARK 3 8 3.1486 - 3.0116 1.00 1319 140 0.2463 0.2959 REMARK 3 9 3.0116 - 2.8957 1.00 1303 140 0.2687 0.2927 REMARK 3 10 2.8957 - 2.7958 1.00 1319 140 0.2704 0.3023 REMARK 3 11 2.7958 - 2.7084 1.00 1294 138 0.2619 0.3245 REMARK 3 12 2.7084 - 2.6310 1.00 1314 140 0.2764 0.3266 REMARK 3 13 2.6310 - 2.5617 1.00 1316 141 0.2969 0.3316 REMARK 3 14 2.5617 - 2.4992 1.00 1299 138 0.3061 0.3474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 3165 REMARK 3 ANGLE : 0.478 4283 REMARK 3 CHIRALITY : 0.038 474 REMARK 3 PLANARITY : 0.003 542 REMARK 3 DIHEDRAL : 10.054 1881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 869:921) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0016 23.4682 -8.4362 REMARK 3 T TENSOR REMARK 3 T11: 1.6711 T22: 0.9861 REMARK 3 T33: 1.1545 T12: 0.4580 REMARK 3 T13: 0.2675 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 7.3466 L22: 8.6072 REMARK 3 L33: 5.6607 L12: -1.3265 REMARK 3 L13: 0.7133 L23: 5.3808 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.3028 S13: -1.3322 REMARK 3 S21: -2.1436 S22: 0.2763 S23: -1.1251 REMARK 3 S31: 0.6144 S32: 1.4286 S33: -0.2302 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 922:1030) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4177 28.5703 -2.0270 REMARK 3 T TENSOR REMARK 3 T11: 1.1864 T22: 0.4599 REMARK 3 T33: 1.0039 T12: 0.1823 REMARK 3 T13: 0.0180 T23: 0.1079 REMARK 3 L TENSOR REMARK 3 L11: 3.9333 L22: 3.6539 REMARK 3 L33: 3.6970 L12: 0.4625 REMARK 3 L13: -1.0078 L23: 0.1557 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: -0.0966 S13: -1.7508 REMARK 3 S21: -0.6226 S22: 0.1886 S23: -0.0782 REMARK 3 S31: 1.5664 S32: 0.4520 S33: -0.1450 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1031:1153) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4754 45.7901 -2.7854 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.3164 REMARK 3 T33: 0.3491 T12: 0.0115 REMARK 3 T13: -0.0310 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.5070 L22: 4.6465 REMARK 3 L33: 5.4773 L12: 0.1134 REMARK 3 L13: 0.2093 L23: -1.3854 REMARK 3 S TENSOR REMARK 3 S11: 0.0945 S12: -0.1179 S13: -0.4156 REMARK 3 S21: -0.7725 S22: -0.0173 S23: 0.2685 REMARK 3 S31: 0.6627 S32: -0.0372 S33: -0.0552 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 52:168) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1893 66.7876 -9.8764 REMARK 3 T TENSOR REMARK 3 T11: 1.0289 T22: 0.8288 REMARK 3 T33: 0.7413 T12: -0.3052 REMARK 3 T13: 0.4366 T23: -0.1528 REMARK 3 L TENSOR REMARK 3 L11: 2.5576 L22: 2.7306 REMARK 3 L33: 6.9051 L12: 1.0173 REMARK 3 L13: -2.7797 L23: -2.7031 REMARK 3 S TENSOR REMARK 3 S11: 0.7604 S12: -0.4761 S13: 0.3518 REMARK 3 S21: 0.0435 S22: -0.0206 S23: -0.6851 REMARK 3 S31: -1.7113 S32: 1.3348 S33: -0.3490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.613 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.268 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.42 REMARK 200 R MERGE FOR SHELL (I) : 1.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRIES 6C5X & 3EYH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.0, 14% (W/V) PEG8000, REMARK 280 100MM MAGNESIUM ACETATE, 2MM TCEP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.71900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.96300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.96300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.35950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.96300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.96300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.07850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.96300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.96300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.35950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.96300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.96300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.07850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.71900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 895 REMARK 465 PRO A 896 REMARK 465 GLU A 897 REMARK 465 GLU A 913 REMARK 465 SER A 914 REMARK 465 GLY A 915 REMARK 465 GLY A 916 REMARK 465 ASN A 917 REMARK 465 ASP A 947 REMARK 465 GLY A 948 REMARK 465 GLY A 949 REMARK 465 ASN A 950 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 871 CG CD OE1 OE2 REMARK 470 LYS A 872 CG CD CE NZ REMARK 470 ARG A 873 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 874 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 875 CG CD1 CD2 REMARK 470 LYS A 876 CG CD CE NZ REMARK 470 ARG A 877 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 888 CD CE NZ REMARK 470 ARG A 893 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 894 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 901 OG1 CG2 REMARK 470 GLU A 903 CG CD OE1 OE2 REMARK 470 VAL A 905 CG1 CG2 REMARK 470 LYS A 911 CG CD CE NZ REMARK 470 LYS A 923 CD CE NZ REMARK 470 GLU A 927 CD OE1 OE2 REMARK 470 ARG A 930 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 943 CG1 CG2 CD1 REMARK 470 LYS A 978 CD CE NZ REMARK 470 LYS A 982 CG CD CE NZ REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LEU B 162 CG CD1 CD2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 878 -73.52 -71.61 REMARK 500 LYS A 911 77.54 55.72 REMARK 500 TYR A 933 87.09 -153.19 REMARK 500 LYS A 941 -73.05 -112.40 REMARK 500 ASP A1003 37.47 -157.91 REMARK 500 ASP A1021 84.96 58.49 REMARK 500 PHE B 112 -69.54 -90.41 REMARK 500 THR B 119 -162.82 -105.35 REMARK 500 VAL B 163 -47.62 -141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1008 OD1 REMARK 620 2 ASP A1021 OD2 84.0 REMARK 620 3 ADP A1201 O3B 171.3 88.8 REMARK 620 4 ADP A1201 O1A 77.7 82.9 96.7 REMARK 620 5 HOH A1302 O 72.0 155.2 114.6 86.1 REMARK 620 6 HOH A1317 O 113.2 92.2 71.8 167.7 102.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1021 OD1 REMARK 620 2 ASP A1021 OD2 59.9 REMARK 620 3 ADP A1201 O2B 75.0 82.1 REMARK 620 4 ADP A1201 O3B 120.3 79.2 56.7 REMARK 620 5 HOH A1325 O 102.3 161.9 96.4 115.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6C5X RELATED DB: PDB REMARK 900 SOCS1 IN COMPLEX WITH ELONGIN B AND ELONGIN C DBREF 6C7Y A 869 1153 UNP P23458 JAK1_HUMAN 869 1153 DBREF 6C7Y B 52 168 UNP B6RCQ2 B6RCQ2_CHICK 48 164 SEQADV 6C7Y ALA A 868 UNP P23458 EXPRESSION TAG SEQRES 1 A 286 ALA HIS PHE GLU LYS ARG PHE LEU LYS ARG ILE ARG ASP SEQRES 2 A 286 LEU GLY GLU GLY HIS PHE GLY LYS VAL GLU LEU CYS ARG SEQRES 3 A 286 TYR ASP PRO GLU GLY ASP ASN THR GLY GLU GLN VAL ALA SEQRES 4 A 286 VAL LYS SER LEU LYS PRO GLU SER GLY GLY ASN HIS ILE SEQRES 5 A 286 ALA ASP LEU LYS LYS GLU ILE GLU ILE LEU ARG ASN LEU SEQRES 6 A 286 TYR HIS GLU ASN ILE VAL LYS TYR LYS GLY ILE CYS THR SEQRES 7 A 286 GLU ASP GLY GLY ASN GLY ILE LYS LEU ILE MET GLU PHE SEQRES 8 A 286 LEU PRO SER GLY SER LEU LYS GLU TYR LEU PRO LYS ASN SEQRES 9 A 286 LYS ASN LYS ILE ASN LEU LYS GLN GLN LEU LYS TYR ALA SEQRES 10 A 286 VAL GLN ILE CYS LYS GLY MET ASP TYR LEU GLY SER ARG SEQRES 11 A 286 GLN TYR VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU SEQRES 12 A 286 VAL GLU SER GLU HIS GLN VAL LYS ILE GLY ASP PHE GLY SEQRES 13 A 286 LEU THR LYS ALA ILE GLU THR ASP LYS GLU TYR PTR THR SEQRES 14 A 286 VAL LYS ASP ASP ARG ASP SER PRO VAL PHE TRP TYR ALA SEQRES 15 A 286 PRO GLU CYS LEU MET GLN SER LYS PHE TYR ILE ALA SER SEQRES 16 A 286 ASP VAL TRP SER PHE GLY VAL THR LEU HIS GLU LEU LEU SEQRES 17 A 286 THR TYR CYS ASP SER ASP SER SER PRO MET ALA LEU PHE SEQRES 18 A 286 LEU LYS MET ILE GLY PRO THR HIS GLY GLN MET THR VAL SEQRES 19 A 286 THR ARG LEU VAL ASN THR LEU LYS GLU GLY LYS ARG LEU SEQRES 20 A 286 PRO CYS PRO PRO ASN CYS PRO ASP GLU VAL TYR GLN LEU SEQRES 21 A 286 MET ARG LYS CYS TRP GLU PHE GLN PRO SER ASN ARG THR SEQRES 22 A 286 SER PHE GLN ASN LEU ILE GLU GLY PHE GLU ALA LEU LEU SEQRES 1 B 117 SER THR HIS PHE ARG THR PHE ARG SER GLN ALA ASP PHE SEQRES 2 B 117 SER SER ILE THR ARG ALA SER SER LEU LEU ASP ALA CYS SEQRES 3 B 117 GLY PHE TYR TRP GLY PRO LEU THR VAL SER ALA ALA HIS SEQRES 4 B 117 GLU LYS LEU LYS SER GLU PRO GLU GLY THR PHE LEU ILE SEQRES 5 B 117 ARG ASP SER THR GLN LYS ASN CYS PHE PHE ALA ILE SER SEQRES 6 B 117 VAL LYS THR ALA THR GLY PRO THR SER ILE ARG ILE ASN SEQRES 7 B 117 PHE GLN THR GLY ARG PHE SER LEU ASP GLY SER LYS GLU SEQRES 8 B 117 THR PHE ASP CYS LEU PHE LYS LEU LEU GLU HIS TYR LEU SEQRES 9 B 117 SER SER PRO ARG LYS VAL LEU VAL THR PRO LEU ARG LYS MODRES 6C7Y PTR A 1035 TYR MODIFIED RESIDUE HET PTR A1035 25 HET ADP A1201 27 HET MG A1202 1 HET MG A1203 1 HET EDO A1204 4 HET EDO A1205 4 HET EDO B 201 4 HET ACT B 202 4 HETNAM PTR O-PHOSPHOTYROSINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN PTR PHOSPHONOTYROSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PTR C9 H12 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *35(H2 O) HELIX 1 AA1 GLU A 871 LEU A 875 5 5 HELIX 2 AA2 ILE A 919 LEU A 932 1 14 HELIX 3 AA3 SER A 963 LEU A 968 1 6 HELIX 4 AA4 ASN A 976 ARG A 997 1 22 HELIX 5 AA5 ALA A 1005 ARG A 1007 5 3 HELIX 6 AA6 PRO A 1044 TYR A 1048 5 5 HELIX 7 AA7 ALA A 1049 SER A 1056 1 8 HELIX 8 AA8 TYR A 1059 THR A 1076 1 18 HELIX 9 AA9 SER A 1083 GLY A 1093 1 11 HELIX 10 AB1 GLN A 1098 GLU A 1110 1 13 HELIX 11 AB2 PRO A 1121 CYS A 1131 1 11 HELIX 12 AB3 GLN A 1135 ARG A 1139 5 5 HELIX 13 AB4 SER A 1141 ALA A 1151 1 11 HELIX 14 AB5 SER B 60 CYS B 77 1 18 HELIX 15 AB6 THR B 85 LYS B 94 1 10 HELIX 16 AB7 CYS B 146 LEU B 155 1 10 SHEET 1 AA1 5 ARG A 879 GLU A 883 0 SHEET 2 AA1 5 LYS A 888 TYR A 894 -1 O VAL A 889 N LEU A 881 SHEET 3 AA1 5 GLU A 903 SER A 909 -1 O VAL A 907 N GLU A 890 SHEET 4 AA1 5 LYS A 953 GLU A 957 -1 O LEU A 954 N LYS A 908 SHEET 5 AA1 5 TYR A 940 CYS A 944 -1 N CYS A 944 O LYS A 953 SHEET 1 AA2 2 TYR A 999 VAL A1000 0 SHEET 2 AA2 2 LYS A1026 ALA A1027 -1 O LYS A1026 N VAL A1000 SHEET 1 AA3 2 VAL A1009 VAL A1011 0 SHEET 2 AA3 2 VAL A1017 ILE A1019 -1 O LYS A1018 N LEU A1010 SHEET 1 AA4 2 PTR A1035 THR A1036 0 SHEET 2 AA4 2 LYS A1057 PHE A1058 -1 O PHE A1058 N PTR A1035 SHEET 1 AA5 5 ARG B 134 LEU B 137 0 SHEET 2 AA5 5 GLY B 122 GLN B 131 -1 N ASN B 129 O SER B 136 SHEET 3 AA5 5 PHE B 113 THR B 119 -1 N VAL B 117 O THR B 124 SHEET 4 AA5 5 THR B 100 ASP B 105 -1 N ARG B 104 O ALA B 114 SHEET 5 AA5 5 THR B 164 PRO B 165 1 O THR B 164 N PHE B 101 LINK C TYR A1034 N PTR A1035 1555 1555 1.33 LINK C PTR A1035 N THR A1036 1555 1555 1.33 LINK OD1 ASN A1008 MG MG A1202 1555 1555 2.18 LINK OD2 ASP A1021 MG MG A1202 1555 1555 2.05 LINK OD1 ASP A1021 MG MG A1203 1555 1555 2.03 LINK OD2 ASP A1021 MG MG A1203 1555 1555 2.33 LINK O3B ADP A1201 MG MG A1202 1555 1555 2.64 LINK O1A ADP A1201 MG MG A1202 1555 1555 2.36 LINK O2B ADP A1201 MG MG A1203 1555 1555 2.47 LINK O3B ADP A1201 MG MG A1203 1555 1555 2.83 LINK MG MG A1202 O HOH A1302 1555 1555 2.27 LINK MG MG A1202 O HOH A1317 1555 1555 2.65 LINK MG MG A1203 O HOH A1325 1555 1555 2.48 SITE 1 AC1 19 GLY A 882 GLY A 884 HIS A 885 PHE A 886 SITE 2 AC1 19 GLY A 887 VAL A 889 ALA A 906 LYS A 908 SITE 3 AC1 19 MET A 956 GLU A 957 LEU A 959 SER A 963 SITE 4 AC1 19 GLU A 966 ARG A1007 ASN A1008 LEU A1010 SITE 5 AC1 19 ASP A1021 MG A1202 MG A1203 SITE 1 AC2 6 ASN A1008 ASP A1021 ADP A1201 MG A1203 SITE 2 AC2 6 HOH A1302 HOH A1317 SITE 1 AC3 5 ASP A1003 ASP A1021 ADP A1201 MG A1202 SITE 2 AC3 5 HOH A1325 SITE 1 AC4 5 LEU A1108 LYS A1109 GLY A1111 ARG A1113 SITE 2 AC4 5 PHE A1134 SITE 1 AC5 6 GLN A1055 LYS A1057 HOH A1316 ARG B 59 SITE 2 AC5 6 SER B 60 GLN B 61 SITE 1 AC6 3 GLN A1098 ARG B 59 ASP B 63 SITE 1 AC7 4 VAL B 86 ARG B 104 SER B 106 THR B 107 CRYST1 83.926 83.926 161.438 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006194 0.00000